RNAprotDB

All interfaces > All interologs > Interface groups > group129 > 6AZ3_B_1 vs 6S0Z_D_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6AZ3_B
6AZ3_1
6S0Z_D
6S0Z_A
Conserved?
B:262 [PRO] 1:1367 [U] D:160 [ALA] A:1174 [U] ✔
B:261 [HIS] 1:1367 [U] D:159 [ASP] A:1174 [U] ✔
B:263 [ALA] 1:1367 [U] D:161 [SER] A:1174 [U] ✔
B:248 [HIS] 1:927 [A2M] D:146 [HIS] A:789 [C] ✔
B:264 [ARG] 1:1367 [U] D:162 [ARG] A:1174 [U] ✔
B:264 [ARG] 1:1368 [G] D:162 [ARG] A:1175 [G] ✔
B:245 [ARG] 1:924 [C] D:141 [MET] A:787 [U] ❌ 6S0Z_A:787 no longer at interface
B:248 [HIS] 1:929 [G] D:146 [HIS] A:791 [U] ❌ 6S0Z_A:791 no longer at interface
B:246 [LYS] 1:926 [G] D:144 [GLY] A:788 [A] ❌ 6AZ3_1:926 no longer at interface
B:247 [THR] 1:926 [G] D:145 [SER] A:788 [A] ❌ 6AZ3_B:247, 6AZ3_1:926 no longer at interface
B:248 [HIS] 1:926 [G] D:146 [HIS] A:788 [A] ❌ 6AZ3_1:926 no longer at interface
B:266 [MET] 1:1367 [U] D:164 [PHE] A:1174 [U] ❌ 6AZ3_B:266 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Alanine racemase-C 0.67 1.81 0.29 0.79 0.71 1.0 0.5 0.76 0.87 0.67 1.00


Other pairs involving 6AZ3_B_1 or 6S0Z_D_A

Total number of entries: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_B_0 6AZ3_B_1 0.59 0.77 1.82 0.33 Alanine racemase-C compare
1VQ8_B_0 6AZ3_B_1 0.58 0.77 1.75 0.33 Alanine racemase-C compare
4Y4O_1E_1A 6AZ3_B_1 0.61 0.66 1.78 0.17 Alanine racemase-C compare
1YHQ_B_0 6S0Z_D_A 0.63 0.89 2.53 0.28 Alanine racemase-C compare
6AZ3_B_1 6S0Z_D_A 0.76 0.67 1.81 0.29 Alanine racemase-C compare
1VQ8_B_0 6S0Z_D_A 0.62 0.89 2.6 0.28 Alanine racemase-C compare
6AZ3_B_4 6S0Z_D_A 0.58 0.59 3.03 0.16 Alanine racemase-C compare
4Y4O_1E_1A 6S0Z_D_A 0.88 0.97 1.32 0.54 Alanine racemase-C Bacterial large subunit ribosomal RNA compare
6AZ3_B_1 7K00_d_a 0.61 0.66 1.8 0.14 Alanine racemase-C compare
6S0Z_D_A 7K00_d_a 0.88 0.97 1.25 0.51 Alanine racemase-C Bacterial large subunit ribosomal RNA compare
6S0Z_D_A 7O7Y_BB_B5 0.60 0.89 3.01 0.23 Alanine racemase-C compare
6S0Z_D_A 7OF0_E_A 0.73 0.91 1.94 0.35 Alanine racemase-C Bacterial large subunit ribosomal RNA compare
6AZ3_B_1 7RYG_D_A 0.73 0.65 1.88 0.29 Alanine racemase-C compare
6S0Z_D_A 7RYG_D_A 0.84 0.98 1.08 0.51 Alanine racemase-C Bacterial large subunit ribosomal RNA compare