Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_B
|
6AZ3_1
|
7K00_d
|
7K00_a
|
Conserved?
|
---|---|---|---|---|
B:262 [PRO] | 1:1367 [U] | d:152 [PRO] | a:1130 [U] | ✔ |
B:261 [HIS] | 1:1367 [U] | d:151 [THR] | a:1130 [U] | ✔ |
B:248 [HIS] | 1:927 [A2M] | d:137 [SER] | a:744 [U] | ✔ |
B:264 [ARG] | 1:1367 [U] | d:154 [LYS] | a:1130 [U] | ✔ |
B:264 [ARG] | 1:1368 [G] | d:154 [LYS] | a:1131 [G] | ✔ |
B:245 [ARG] | 1:924 [C] | d:132 [ALA] | a:742 [A] | ❌ 7K00_d_a |
B:263 [ALA] | 1:1367 [U] | d:153 [GLY] | a:1130 [U] | ❌ 7K00_d_a |
B:248 [HIS] | 1:929 [G] | d:137 [SER] | a:746 [PSU] | ❌ 7K00_a:746 no longer at interface |
B:247 [THR] | 1:926 [G] | d:136 [ASN] | a:743 [A] | ❌ 6AZ3_B:247, 6AZ3_1:926 no longer at interface |
B:249 [ARG] | 1:928 [C] | d:138 [LEU] | a:745 [1MG] | ❌ 6AZ3_B:249, 6AZ3_1:928 no longer at interface |
B:247 [THR] | 1:927 [A2M] | d:136 [ASN] | a:744 [U] | ❌ 6AZ3_B:247 no longer at interface |
B:249 [ARG] | 1:927 [A2M] | d:138 [LEU] | a:744 [U] | ❌ 6AZ3_B:249 no longer at interface |
B:266 [MET] | 1:1367 [U] | d:156 [PHE] | a:1130 [U] | ❌ 6AZ3_B:266 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Alanine racemase-C | 0.66 | 1.8 | 0.14 | 0.8 | 0.7 | 1.0 | 0.67 | 0.61 | 0.80 | 0.00 | 0.75 |
Other pairs involving 6AZ3_B_1 or 7K00_d_a
Total number of entries: 14