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All interfaces > All interologs > Interface groups > group129 > 6AZ3_B_4

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_B
6AZ3_4
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:9 [PRO] 4:70 [C] 3.78 4:40 [G] 96.36
B:9 [PRO] 4:71 [C] 4.06 4:126 [G] 96.36
B:10 [ARG] 4:39 [A] 4.42 91.78
B:10 [ARG] 4:71 [C] 3.73 4:126 [G] 91.78
B:10 [ARG] 4:72 [G] 3.58 4:125 [C] 91.78
B:11 [HIS] 4:72 [G] 3.37 4:125 [C] 75.28
B:12 [GLY] 4:39 [A] 3.86 98.09
B:12 [GLY] 4:71 [C] 4.71 4:126 [G] 98.09
B:12 [GLY] 4:72 [G] 2.65 4:125 [C] 98.09
B:12 [GLY] 4:73 [U] 3.68 4:124 [A] 98.09
B:13 [HIS] 4:38 [A] 2.95 sugar:SC 98.95
B:13 [HIS] 4:39 [A] 3.09 base/AA stacks 98.95
B:13 [HIS] 4:72 [G] 2.83 4:125 [C] sugar:SC 98.95
B:13 [HIS] 4:73 [U] 3.37 4:124 [A] 98.95
B:14 [LEU] 4:37 [G] 3.17 4:165 [C] sugar:BB 75.76
B:14 [LEU] 4:38 [A] 3.59 75.76
B:14 [LEU] 4:39 [A] 4.64 75.76
B:15 [GLY] 4:37 [G] 2.71 4:165 [C] base:BB 81.6
B:15 [GLY] 4:38 [A] 3.3 81.6
B:15 [GLY] 4:165 [C] 4.9 4:37 [G] 81.6
B:15 [GLY] 4:166 [C] 3.62 4:36 [G] 81.6
B:16 [PHE] 4:37 [G] 4.84 4:165 [C] 54.15
B:16 [PHE] 4:72 [G] 4.08 4:125 [C] 54.15
B:16 [PHE] 4:73 [U] 3.58 4:124 [A] 54.15
B:16 [PHE] 4:165 [C] 3.55 4:37 [G] 54.15
B:16 [PHE] 4:166 [C] 3.91 4:36 [G] 54.15
B:17 [LEU] 4:36 [G] 4.22 4:166 [C] 56.34
B:17 [LEU] 4:37 [G] 4.22 4:165 [C] 56.34
B:17 [LEU] 4:166 [C] 3.34 4:36 [G] 56.34
B:17 [LEU] 4:167 [C] 4.18 4:35 [G] 56.34
B:18 [PRO] 4:36 [G] 4.87 4:166 [C] 96.23
B:18 [PRO] 4:166 [C] 4.22 4:36 [G] 96.23
B:18 [PRO] 4:167 [C] 3.38 4:35 [G] 96.23
B:19 [ARG] 4:72 [G] 4.38 4:125 [C] 90.32
B:19 [ARG] 4:73 [U] 2.33 4:124 [A] 90.32
B:19 [ARG] 4:74 [OMG] 3.88 4:123 [C] 90.32
B:20 [LYS] 4:167 [C] 3.57 4:35 [G] 71.26
B:20 [LYS] 4:168 [A] 3.36 4:34 [A] 71.26
B:22 [SER] 4:167 [C] 4.77 4:35 [G] 86.77
B:23 [ARG] 4:168 [A] 3.82 4:34 [A] 36.46
B:24 [GLN] 4:30 [C] 4.77 4:175 [G] 66.02
B:26 [ARG] 4:30 [C] 3.56 4:175 [G] 29.44
B:26 [ARG] 4:31 [G] 2.9 4:173 [C] 29.44
B:28 [ARG] 4:31 [G] 3.66 4:173 [C] 70.3
B:28 [ARG] 4:32 [U] 4.08 4:169 [A] 70.3
B:28 [ARG] 4:168 [A] 4.85 4:34 [A] 70.3
B:30 [ARG] 4:165 [C] 3.9 4:37 [G] 71.9
B:30 [ARG] 4:166 [C] 3.38 4:36 [G] 71.9
B:30 [ARG] 4:167 [C] 2.92 4:35 [G] 71.9
B:30 [ARG] 4:168 [A] 4.89 4:34 [A] 71.9
B:31 [ALA] 4:164 [U] 3.75 69.54
B:31 [ALA] 4:165 [C] 3.33 4:37 [G] 69.54
B:50 [LYS] 4:75 [C] 3.26 4:122 [G] 98.95
B:50 [LYS] 4:76 [C] 2.94 98.95
B:53 [MET] 4:75 [C] 3.77 4:122 [G] 96.07
B:53 [MET] 4:76 [C] 3.62 96.07
B:53 [MET] 4:77 [U] 3.23 96.07
B:54 [THR] 4:77 [U] 3.5 87.45
B:55 [HIS] 4:77 [U] 2.99 82.43
B:55 [HIS] 4:78 [C] 4.3 82.43
B:62 [ARG] 4:66 [C] 3.93 4:44 [G] 39.35
B:62 [ARG] 4:67 [A] 2.57 4:43 [U] 39.35
B:63 [PRO] 4:65 [C] 3.51 4:45 [G] sugar:BB 37.32
B:63 [PRO] 4:66 [C] 4.01 4:44 [G] 37.32
B:64 [GLY] 4:65 [C] 4.67 4:45 [G] 43.8
B:64 [GLY] 4:66 [C] 3.9 4:44 [G] 43.8
B:65 [SER] 4:66 [C] 3.19 4:44 [G] 90.43
B:65 [SER] 4:67 [A] 3.19 4:43 [U] 90.43
B:66 [LYS] 4:66 [C] 4.58 4:44 [G] 66.25
B:67 [VAL] 4:67 [A] 4.84 4:43 [U] 62.9
B:74 [GLU] 4:123 [C] 4.76 4:74 [OMG] 45.28
B:74 [GLU] 4:124 [A] 3.33 4:73 [U] 45.28
B:75 [PRO] 4:77 [U] 3.4 73.7
B:75 [PRO] 4:123 [C] 3.18 4:74 [OMG] 73.7
B:75 [PRO] 4:124 [A] 4.81 4:73 [U] 73.7
B:92 [TYR] 4:31 [G] 3.0 4:173 [C] 89.8
B:92 [TYR] 4:32 [U] 4.56 4:169 [A] 89.8
B:93 [ARG] 4:175 [G] 4.95 4:30 [C] 12.97
B:97 [VAL] 4:32 [U] 4.96 4:169 [A] 36.83
B:97 [VAL] 4:33 [G] 4.04 4:171 [A] 36.83
B:97 [VAL] 4:169 [A] 4.76 4:32 [U] 36.83
B:97 [VAL] 4:171 [A] 4.44 4:33 [G] 36.83
B:98 [GLY] 4:32 [U] 3.96 4:169 [A] 84.8
B:98 [GLY] 4:33 [G] 3.62 4:171 [A] 84.8
B:99 [LEU] 4:32 [U] 3.3 4:169 [A] sugar:BB 52.62
B:99 [LEU] 4:33 [G] 3.4 4:171 [A] 52.62
B:100 [LYS] 4:32 [U] 4.53 4:169 [A] 38.52
B:100 [LYS] 4:169 [A] 4.0 4:32 [U] 38.52
B:100 [LYS] 4:173 [C] 4.05 4:31 [G] 38.52
B:100 [LYS] 4:175 [G] 3.75 4:30 [C] 38.52
B:101 [THR] 4:31 [G] 4.03 4:173 [C] 50.72
B:101 [THR] 4:175 [G] 2.68 4:30 [C] base:SC, sugar:BB, sugar:BB 50.72
B:101 [THR] 4:176 [A] 3.36 4:29 [U] 50.72
B:102 [ILE] 4:175 [G] 4.73 4:30 [C] 9.31
B:102 [ILE] 4:176 [A] 3.7 4:29 [U] 9.31
B:103 [GLY] 4:176 [A] 3.55 4:29 [U] 34.53
B:103 [GLY] 4:177 [U] 4.89 4:28 [A] 34.53
B:104 [THR] 4:176 [A] 3.58 4:29 [U] 83.6
B:104 [THR] 4:177 [U] 3.63 4:28 [A] 83.6
B:106 [TRP] 4:177 [U] 3.21 4:28 [A] 9.49
B:106 [TRP] 4:178 [G] 4.32 4:27 [U] 9.49
B:117 [ARG] 4:28 [A] 3.82 4:177 [U] sugar:BB 38.06
B:117 [ARG] 4:29 [U] 3.74 4:176 [A] 38.06
B:118 [TYR] 4:28 [A] 3.28 4:177 [U] 52.71
B:118 [TYR] 4:29 [U] 4.13 4:176 [A] 52.71
B:118 [TYR] 4:177 [U] 4.33 4:28 [A] 52.71
B:118 [TYR] 4:178 [G] 3.82 4:27 [U] 52.71
B:119 [TYR] 4:28 [A] 4.72 4:177 [U] 56.89
B:120 [LYS] 4:28 [A] 2.98 4:177 [U] 85.14
B:120 [LYS] 4:29 [U] 3.95 4:176 [A] 85.14
B:128 [LEU] 4:179 [C] 3.22 4:26 [G] 50.7
B:128 [LEU] 4:180 [C] 3.77 4:25 [G] 50.7
B:129 [ALA] 4:178 [G] 3.24 4:27 [U] 71.15
B:129 [ALA] 4:179 [C] 3.87 4:26 [G] 71.15
B:130 [PHE] 4:177 [U] 4.87 4:28 [A] 65.63
B:130 [PHE] 4:178 [G] 3.05 4:27 [U] sugar:BB 65.63
B:130 [PHE] 4:179 [C] 3.66 4:26 [G] 65.63
B:131 [SER] 4:178 [G] 4.53 4:27 [U] 69.89
B:131 [SER] 4:179 [C] 3.76 4:26 [G] 69.89
B:131 [SER] 4:180 [C] 4.72 4:25 [G] 69.89
B:132 [ARG] 4:179 [C] 3.09 4:26 [G] 46.65
B:132 [ARG] 4:180 [C] 3.22 4:25 [G] 46.65
B:133 [GLN] 4:178 [G] 3.49 4:27 [U] 34.96
B:133 [GLN] 4:179 [C] 2.57 4:26 [G] 34.96
B:134 [LYS] 4:179 [C] 4.92 4:26 [G] 33.62
B:161 [ARG] 4:31 [G] 3.33 4:173 [C] 83.11
B:161 [ARG] 4:32 [U] 3.32 4:169 [A] 83.11
B:163 [ILE] 4:30 [C] 4.56 4:175 [G] 58.31
B:183 [VAL] 4:29 [U] 4.84 4:176 [A] 53.3
B:183 [VAL] 4:30 [C] 3.64 4:175 [G] 53.3
B:183 [VAL] 4:31 [G] 4.4 4:173 [C] 53.3
B:184 [GLN] 4:30 [C] 4.06 4:175 [G] 50.81
B:184 [GLN] 4:31 [G] 3.58 4:173 [C] 50.81
B:185 [GLU] 4:30 [C] 2.55 4:175 [G] sugar:SC 98.95
B:185 [GLU] 4:31 [G] 3.55 4:173 [C] 98.95
B:226 [THR] 4:74 [OMG] 3.57 4:123 [C] 98.06
B:226 [THR] 4:75 [C] 3.85 4:122 [G] 98.06
B:227 [LYS] 4:74 [OMG] 4.82 4:123 [C] 87.11
B:227 [LYS] 4:75 [C] 2.92 4:122 [G] 87.11
B:227 [LYS] 4:76 [C] 2.2 87.11
B:227 [LYS] 4:117 [C] 3.71 4:81 [G] 87.11
B:229 [HIS] 4:75 [C] 4.47 4:122 [G] 76.94
B:229 [HIS] 4:117 [C] 4.31 4:81 [G] 76.94
B:229 [HIS] 4:118 [C] 3.55 4:80 [A] 76.94
B:236 [LYS] 4:118 [C] 4.35 4:80 [A] 84.52
B:238 [TRP] 4:72 [G] 4.73 4:125 [C] 68.38
B:267 [TYR] 4:37 [G] 3.6 4:165 [C] 35.42
B:267 [TYR] 4:38 [A] 2.47 35.42
B:278 [HIS] 4:74 [OMG] 3.83 4:123 [C] 88.36
B:279 [HIS] 4:166 [C] 2.76 4:36 [G] 61.68
B:279 [HIS] 4:167 [C] 3.87 4:35 [G] 61.68
B:280 [ARG] 4:73 [U] 2.89 4:124 [A] 98.9
B:280 [ARG] 4:74 [OMG] 3.22 4:123 [C] 98.9
B:280 [ARG] 4:166 [C] 4.05 4:36 [G] 98.9
B:281 [THR] 4:165 [C] 3.21 4:37 [G] 89.85
B:281 [THR] 4:166 [C] 2.46 4:36 [G] 89.85
B:282 [GLN] 4:74 [OMG] 3.42 4:123 [C] 77.2
B:282 [GLN] 4:125 [C] 4.46 4:72 [G] 77.2
B:283 [LEU] 4:125 [C] 2.49 4:72 [G] sugar:BB 39.54
B:283 [LEU] 4:126 [G] 3.87 4:71 [C] 39.54
B:283 [LEU] 4:127 [G] 3.65 39.54
B:284 [ASN] 4:125 [C] 3.28 4:72 [G] 98.87
B:284 [ASN] 4:126 [G] 2.94 4:71 [C] 98.87
B:284 [ASN] 4:127 [G] 4.88 98.87
B:285 [LYS] 4:74 [OMG] 4.98 4:123 [C] 88.83
B:285 [LYS] 4:124 [A] 3.12 4:73 [U] sugar:SC 88.83
B:285 [LYS] 4:125 [C] 3.55 4:72 [G] sugar:SC 88.83
B:319 [VAL] 4:115 [A] 3.68 8.89
B:319 [VAL] 4:116 [G] 3.93 4:82 [U] 8.89
B:332 [LYS] 4:124 [A] 3.73 4:73 [U] 57.54
B:332 [LYS] 4:125 [C] 3.24 4:72 [G] 57.54
B:333 [GLY] 4:124 [A] 3.84 4:73 [U] 98.56
B:334 [SER] 4:74 [OMG] 3.06 4:123 [C] base:SC 96.65
B:334 [SER] 4:75 [C] 3.28 4:122 [G] 96.65
B:334 [SER] 4:123 [C] 4.94 4:74 [OMG] 96.65
B:334 [SER] 4:124 [A] 3.98 4:73 [U] 96.65
B:335 [VAL] 4:74 [OMG] 4.0 4:123 [C] 72.79
B:335 [VAL] 4:75 [C] 3.22 4:122 [G] 72.79
B:336 [SER] 4:74 [OMG] 2.66 4:123 [C] sugar:SC 64.76
B:336 [SER] 4:75 [C] 3.75 4:122 [G] 64.76
B:337 [GLY] 4:74 [OMG] 4.11 4:123 [C] 98.58
B:337 [GLY] 4:75 [C] 2.84 4:122 [G] 98.58
B:337 [GLY] 4:76 [C] 3.7 98.58
B:338 [PRO] 4:75 [C] 4.71 4:122 [G] 79.23
B:338 [PRO] 4:76 [C] 4.41 79.23
B:339 [ARG] 4:76 [C] 4.68 39.99
B:339 [ARG] 4:116 [G] 3.27 4:82 [U] 39.99
B:346 [ARG] 4:164 [U] 4.75 88.2
B:346 [ARG] 4:165 [C] 3.6 4:37 [G] 88.2
B:349 [MET] 4:127 [G] 4.68 53.73
B:349 [MET] 4:164 [U] 3.64 53.73
B:349 [MET] 4:165 [C] 4.83 4:37 [G] 53.73
B:350 [ALA] 4:127 [G] 3.67 89.9
B:351 [PRO] 4:127 [G] 3.5 36.82
B:351 [PRO] 4:128 [U] 3.33 4:162 [A] 36.82
B:355 [ARG] 4:65 [C] 2.83 4:45 [G] 1.33
B:355 [ARG] 4:66 [C] 2.6 4:44 [G] 1.33
B:356 [HIS] 4:125 [C] 3.44 4:72 [G] 16.99
B:367 [ASP] 4:77 [U] 4.35 67.15
B:370 [SER] 4:78 [C] 4.5 81.0
B:371 [LYS] 4:77 [U] 3.36 sugar:SC 46.35
B:371 [LYS] 4:78 [C] 4.59 46.35
B:371 [LYS] 4:114 [A] 4.86 4:83 [U] 46.35
B:371 [LYS] 4:115 [A] 2.89 46.35
B:372 [ILE] 4:114 [A] 3.7 4:83 [U] 55.44
B:372 [ILE] 4:115 [A] 3.74 55.44
B:373 [GLY] 4:78 [C] 4.11 57.28
B:373 [GLY] 4:114 [A] 3.22 4:83 [U] 57.28
B:373 [GLY] 4:115 [A] 3.08 57.28
B:374 [HIS] 4:79 [U] 3.32 4:119 [A] 43.87
B:374 [HIS] 4:80 [A] 4.67 4:118 [C] 43.87
B:374 [HIS] 4:113 [G] 4.64 4:85 [C] 43.87
B:374 [HIS] 4:114 [A] 3.46 4:83 [U] 43.87
B:375 [GLY] 4:78 [C] 4.95 43.56

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
UniProt ID
ECOD label(s)
RFAM label(s)
Is ribosome? RCSB PDB link
group129 6AZ3_B_4 B: Ribosomal protein ul3, Leishmania donovani (natural) 4: rRNA delta, Leishmania donovani (natural) Alanine racemase-C Eukaryotic large subunit ribosomal RNA

Interologs

Total number of interologs for this interface: 7