Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
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Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
6AZ3_B
|
6AZ3_4
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
B:9 [PRO] | 4:70 [C] | 3.78 | 4:40 [G] | 96.36 | ||
B:9 [PRO] | 4:71 [C] | 4.06 | 4:126 [G] | 96.36 | ||
B:10 [ARG] | 4:39 [A] | 4.42 | 91.78 | |||
B:10 [ARG] | 4:71 [C] | 3.73 | 4:126 [G] | 91.78 | ||
B:10 [ARG] | 4:72 [G] | 3.58 | 4:125 [C] | 91.78 | ||
B:11 [HIS] | 4:72 [G] | 3.37 | 4:125 [C] | 75.28 | ||
B:12 [GLY] | 4:39 [A] | 3.86 | 98.09 | |||
B:12 [GLY] | 4:71 [C] | 4.71 | 4:126 [G] | 98.09 | ||
B:12 [GLY] | 4:72 [G] | 2.65 | 4:125 [C] | 98.09 | ||
B:12 [GLY] | 4:73 [U] | 3.68 | 4:124 [A] | 98.09 | ||
B:13 [HIS] | 4:38 [A] | 2.95 | sugar:SC | 98.95 | ||
B:13 [HIS] | 4:39 [A] | 3.09 | base/AA stacks | 98.95 | ||
B:13 [HIS] | 4:72 [G] | 2.83 | 4:125 [C] | sugar:SC | 98.95 | |
B:13 [HIS] | 4:73 [U] | 3.37 | 4:124 [A] | 98.95 | ||
B:14 [LEU] | 4:37 [G] | 3.17 | 4:165 [C] | sugar:BB | 75.76 | |
B:14 [LEU] | 4:38 [A] | 3.59 | 75.76 | |||
B:14 [LEU] | 4:39 [A] | 4.64 | 75.76 | |||
B:15 [GLY] | 4:37 [G] | 2.71 | 4:165 [C] | base:BB | 81.6 | |
B:15 [GLY] | 4:38 [A] | 3.3 | 81.6 | |||
B:15 [GLY] | 4:165 [C] | 4.9 | 4:37 [G] | 81.6 | ||
B:15 [GLY] | 4:166 [C] | 3.62 | 4:36 [G] | 81.6 | ||
B:16 [PHE] | 4:37 [G] | 4.84 | 4:165 [C] | 54.15 | ||
B:16 [PHE] | 4:72 [G] | 4.08 | 4:125 [C] | 54.15 | ||
B:16 [PHE] | 4:73 [U] | 3.58 | 4:124 [A] | 54.15 | ||
B:16 [PHE] | 4:165 [C] | 3.55 | 4:37 [G] | 54.15 | ||
B:16 [PHE] | 4:166 [C] | 3.91 | 4:36 [G] | 54.15 | ||
B:17 [LEU] | 4:36 [G] | 4.22 | 4:166 [C] | 56.34 | ||
B:17 [LEU] | 4:37 [G] | 4.22 | 4:165 [C] | 56.34 | ||
B:17 [LEU] | 4:166 [C] | 3.34 | 4:36 [G] | 56.34 | ||
B:17 [LEU] | 4:167 [C] | 4.18 | 4:35 [G] | 56.34 | ||
B:18 [PRO] | 4:36 [G] | 4.87 | 4:166 [C] | 96.23 | ||
B:18 [PRO] | 4:166 [C] | 4.22 | 4:36 [G] | 96.23 | ||
B:18 [PRO] | 4:167 [C] | 3.38 | 4:35 [G] | 96.23 | ||
B:19 [ARG] | 4:72 [G] | 4.38 | 4:125 [C] | 90.32 | ||
B:19 [ARG] | 4:73 [U] | 2.33 | 4:124 [A] | 90.32 | ||
B:19 [ARG] | 4:74 [OMG] | 3.88 | 4:123 [C] | 90.32 | ||
B:20 [LYS] | 4:167 [C] | 3.57 | 4:35 [G] | 71.26 | ||
B:20 [LYS] | 4:168 [A] | 3.36 | 4:34 [A] | 71.26 | ||
B:22 [SER] | 4:167 [C] | 4.77 | 4:35 [G] | 86.77 | ||
B:23 [ARG] | 4:168 [A] | 3.82 | 4:34 [A] | 36.46 | ||
B:24 [GLN] | 4:30 [C] | 4.77 | 4:175 [G] | 66.02 | ||
B:26 [ARG] | 4:30 [C] | 3.56 | 4:175 [G] | 29.44 | ||
B:26 [ARG] | 4:31 [G] | 2.9 | 4:173 [C] | 29.44 | ||
B:28 [ARG] | 4:31 [G] | 3.66 | 4:173 [C] | 70.3 | ||
B:28 [ARG] | 4:32 [U] | 4.08 | 4:169 [A] | 70.3 | ||
B:28 [ARG] | 4:168 [A] | 4.85 | 4:34 [A] | 70.3 | ||
B:30 [ARG] | 4:165 [C] | 3.9 | 4:37 [G] | 71.9 | ||
B:30 [ARG] | 4:166 [C] | 3.38 | 4:36 [G] | 71.9 | ||
B:30 [ARG] | 4:167 [C] | 2.92 | 4:35 [G] | 71.9 | ||
B:30 [ARG] | 4:168 [A] | 4.89 | 4:34 [A] | 71.9 | ||
B:31 [ALA] | 4:164 [U] | 3.75 | 69.54 | |||
B:31 [ALA] | 4:165 [C] | 3.33 | 4:37 [G] | 69.54 | ||
B:50 [LYS] | 4:75 [C] | 3.26 | 4:122 [G] | 98.95 | ||
B:50 [LYS] | 4:76 [C] | 2.94 | 98.95 | |||
B:53 [MET] | 4:75 [C] | 3.77 | 4:122 [G] | 96.07 | ||
B:53 [MET] | 4:76 [C] | 3.62 | 96.07 | |||
B:53 [MET] | 4:77 [U] | 3.23 | 96.07 | |||
B:54 [THR] | 4:77 [U] | 3.5 | 87.45 | |||
B:55 [HIS] | 4:77 [U] | 2.99 | 82.43 | |||
B:55 [HIS] | 4:78 [C] | 4.3 | 82.43 | |||
B:62 [ARG] | 4:66 [C] | 3.93 | 4:44 [G] | 39.35 | ||
B:62 [ARG] | 4:67 [A] | 2.57 | 4:43 [U] | 39.35 | ||
B:63 [PRO] | 4:65 [C] | 3.51 | 4:45 [G] | sugar:BB | 37.32 | |
B:63 [PRO] | 4:66 [C] | 4.01 | 4:44 [G] | 37.32 | ||
B:64 [GLY] | 4:65 [C] | 4.67 | 4:45 [G] | 43.8 | ||
B:64 [GLY] | 4:66 [C] | 3.9 | 4:44 [G] | 43.8 | ||
B:65 [SER] | 4:66 [C] | 3.19 | 4:44 [G] | 90.43 | ||
B:65 [SER] | 4:67 [A] | 3.19 | 4:43 [U] | 90.43 | ||
B:66 [LYS] | 4:66 [C] | 4.58 | 4:44 [G] | 66.25 | ||
B:67 [VAL] | 4:67 [A] | 4.84 | 4:43 [U] | 62.9 | ||
B:74 [GLU] | 4:123 [C] | 4.76 | 4:74 [OMG] | 45.28 | ||
B:74 [GLU] | 4:124 [A] | 3.33 | 4:73 [U] | 45.28 | ||
B:75 [PRO] | 4:77 [U] | 3.4 | 73.7 | |||
B:75 [PRO] | 4:123 [C] | 3.18 | 4:74 [OMG] | 73.7 | ||
B:75 [PRO] | 4:124 [A] | 4.81 | 4:73 [U] | 73.7 | ||
B:92 [TYR] | 4:31 [G] | 3.0 | 4:173 [C] | 89.8 | ||
B:92 [TYR] | 4:32 [U] | 4.56 | 4:169 [A] | 89.8 | ||
B:93 [ARG] | 4:175 [G] | 4.95 | 4:30 [C] | 12.97 | ||
B:97 [VAL] | 4:32 [U] | 4.96 | 4:169 [A] | 36.83 | ||
B:97 [VAL] | 4:33 [G] | 4.04 | 4:171 [A] | 36.83 | ||
B:97 [VAL] | 4:169 [A] | 4.76 | 4:32 [U] | 36.83 | ||
B:97 [VAL] | 4:171 [A] | 4.44 | 4:33 [G] | 36.83 | ||
B:98 [GLY] | 4:32 [U] | 3.96 | 4:169 [A] | 84.8 | ||
B:98 [GLY] | 4:33 [G] | 3.62 | 4:171 [A] | 84.8 | ||
B:99 [LEU] | 4:32 [U] | 3.3 | 4:169 [A] | sugar:BB | 52.62 | |
B:99 [LEU] | 4:33 [G] | 3.4 | 4:171 [A] | 52.62 | ||
B:100 [LYS] | 4:32 [U] | 4.53 | 4:169 [A] | 38.52 | ||
B:100 [LYS] | 4:169 [A] | 4.0 | 4:32 [U] | 38.52 | ||
B:100 [LYS] | 4:173 [C] | 4.05 | 4:31 [G] | 38.52 | ||
B:100 [LYS] | 4:175 [G] | 3.75 | 4:30 [C] | 38.52 | ||
B:101 [THR] | 4:31 [G] | 4.03 | 4:173 [C] | 50.72 | ||
B:101 [THR] | 4:175 [G] | 2.68 | 4:30 [C] | base:SC, sugar:BB, sugar:BB | 50.72 | |
B:101 [THR] | 4:176 [A] | 3.36 | 4:29 [U] | 50.72 | ||
B:102 [ILE] | 4:175 [G] | 4.73 | 4:30 [C] | 9.31 | ||
B:102 [ILE] | 4:176 [A] | 3.7 | 4:29 [U] | 9.31 | ||
B:103 [GLY] | 4:176 [A] | 3.55 | 4:29 [U] | 34.53 | ||
B:103 [GLY] | 4:177 [U] | 4.89 | 4:28 [A] | 34.53 | ||
B:104 [THR] | 4:176 [A] | 3.58 | 4:29 [U] | 83.6 | ||
B:104 [THR] | 4:177 [U] | 3.63 | 4:28 [A] | 83.6 | ||
B:106 [TRP] | 4:177 [U] | 3.21 | 4:28 [A] | 9.49 | ||
B:106 [TRP] | 4:178 [G] | 4.32 | 4:27 [U] | 9.49 | ||
B:117 [ARG] | 4:28 [A] | 3.82 | 4:177 [U] | sugar:BB | 38.06 | |
B:117 [ARG] | 4:29 [U] | 3.74 | 4:176 [A] | 38.06 | ||
B:118 [TYR] | 4:28 [A] | 3.28 | 4:177 [U] | 52.71 | ||
B:118 [TYR] | 4:29 [U] | 4.13 | 4:176 [A] | 52.71 | ||
B:118 [TYR] | 4:177 [U] | 4.33 | 4:28 [A] | 52.71 | ||
B:118 [TYR] | 4:178 [G] | 3.82 | 4:27 [U] | 52.71 | ||
B:119 [TYR] | 4:28 [A] | 4.72 | 4:177 [U] | 56.89 | ||
B:120 [LYS] | 4:28 [A] | 2.98 | 4:177 [U] | 85.14 | ||
B:120 [LYS] | 4:29 [U] | 3.95 | 4:176 [A] | 85.14 | ||
B:128 [LEU] | 4:179 [C] | 3.22 | 4:26 [G] | 50.7 | ||
B:128 [LEU] | 4:180 [C] | 3.77 | 4:25 [G] | 50.7 | ||
B:129 [ALA] | 4:178 [G] | 3.24 | 4:27 [U] | 71.15 | ||
B:129 [ALA] | 4:179 [C] | 3.87 | 4:26 [G] | 71.15 | ||
B:130 [PHE] | 4:177 [U] | 4.87 | 4:28 [A] | 65.63 | ||
B:130 [PHE] | 4:178 [G] | 3.05 | 4:27 [U] | sugar:BB | 65.63 | |
B:130 [PHE] | 4:179 [C] | 3.66 | 4:26 [G] | 65.63 | ||
B:131 [SER] | 4:178 [G] | 4.53 | 4:27 [U] | 69.89 | ||
B:131 [SER] | 4:179 [C] | 3.76 | 4:26 [G] | 69.89 | ||
B:131 [SER] | 4:180 [C] | 4.72 | 4:25 [G] | 69.89 | ||
B:132 [ARG] | 4:179 [C] | 3.09 | 4:26 [G] | 46.65 | ||
B:132 [ARG] | 4:180 [C] | 3.22 | 4:25 [G] | 46.65 | ||
B:133 [GLN] | 4:178 [G] | 3.49 | 4:27 [U] | 34.96 | ||
B:133 [GLN] | 4:179 [C] | 2.57 | 4:26 [G] | 34.96 | ||
B:134 [LYS] | 4:179 [C] | 4.92 | 4:26 [G] | 33.62 | ||
B:161 [ARG] | 4:31 [G] | 3.33 | 4:173 [C] | 83.11 | ||
B:161 [ARG] | 4:32 [U] | 3.32 | 4:169 [A] | 83.11 | ||
B:163 [ILE] | 4:30 [C] | 4.56 | 4:175 [G] | 58.31 | ||
B:183 [VAL] | 4:29 [U] | 4.84 | 4:176 [A] | 53.3 | ||
B:183 [VAL] | 4:30 [C] | 3.64 | 4:175 [G] | 53.3 | ||
B:183 [VAL] | 4:31 [G] | 4.4 | 4:173 [C] | 53.3 | ||
B:184 [GLN] | 4:30 [C] | 4.06 | 4:175 [G] | 50.81 | ||
B:184 [GLN] | 4:31 [G] | 3.58 | 4:173 [C] | 50.81 | ||
B:185 [GLU] | 4:30 [C] | 2.55 | 4:175 [G] | sugar:SC | 98.95 | |
B:185 [GLU] | 4:31 [G] | 3.55 | 4:173 [C] | 98.95 | ||
B:226 [THR] | 4:74 [OMG] | 3.57 | 4:123 [C] | 98.06 | ||
B:226 [THR] | 4:75 [C] | 3.85 | 4:122 [G] | 98.06 | ||
B:227 [LYS] | 4:74 [OMG] | 4.82 | 4:123 [C] | 87.11 | ||
B:227 [LYS] | 4:75 [C] | 2.92 | 4:122 [G] | 87.11 | ||
B:227 [LYS] | 4:76 [C] | 2.2 | 87.11 | |||
B:227 [LYS] | 4:117 [C] | 3.71 | 4:81 [G] | 87.11 | ||
B:229 [HIS] | 4:75 [C] | 4.47 | 4:122 [G] | 76.94 | ||
B:229 [HIS] | 4:117 [C] | 4.31 | 4:81 [G] | 76.94 | ||
B:229 [HIS] | 4:118 [C] | 3.55 | 4:80 [A] | 76.94 | ||
B:236 [LYS] | 4:118 [C] | 4.35 | 4:80 [A] | 84.52 | ||
B:238 [TRP] | 4:72 [G] | 4.73 | 4:125 [C] | 68.38 | ||
B:267 [TYR] | 4:37 [G] | 3.6 | 4:165 [C] | 35.42 | ||
B:267 [TYR] | 4:38 [A] | 2.47 | 35.42 | |||
B:278 [HIS] | 4:74 [OMG] | 3.83 | 4:123 [C] | 88.36 | ||
B:279 [HIS] | 4:166 [C] | 2.76 | 4:36 [G] | 61.68 | ||
B:279 [HIS] | 4:167 [C] | 3.87 | 4:35 [G] | 61.68 | ||
B:280 [ARG] | 4:73 [U] | 2.89 | 4:124 [A] | 98.9 | ||
B:280 [ARG] | 4:74 [OMG] | 3.22 | 4:123 [C] | 98.9 | ||
B:280 [ARG] | 4:166 [C] | 4.05 | 4:36 [G] | 98.9 | ||
B:281 [THR] | 4:165 [C] | 3.21 | 4:37 [G] | 89.85 | ||
B:281 [THR] | 4:166 [C] | 2.46 | 4:36 [G] | 89.85 | ||
B:282 [GLN] | 4:74 [OMG] | 3.42 | 4:123 [C] | 77.2 | ||
B:282 [GLN] | 4:125 [C] | 4.46 | 4:72 [G] | 77.2 | ||
B:283 [LEU] | 4:125 [C] | 2.49 | 4:72 [G] | sugar:BB | 39.54 | |
B:283 [LEU] | 4:126 [G] | 3.87 | 4:71 [C] | 39.54 | ||
B:283 [LEU] | 4:127 [G] | 3.65 | 39.54 | |||
B:284 [ASN] | 4:125 [C] | 3.28 | 4:72 [G] | 98.87 | ||
B:284 [ASN] | 4:126 [G] | 2.94 | 4:71 [C] | 98.87 | ||
B:284 [ASN] | 4:127 [G] | 4.88 | 98.87 | |||
B:285 [LYS] | 4:74 [OMG] | 4.98 | 4:123 [C] | 88.83 | ||
B:285 [LYS] | 4:124 [A] | 3.12 | 4:73 [U] | sugar:SC | 88.83 | |
B:285 [LYS] | 4:125 [C] | 3.55 | 4:72 [G] | sugar:SC | 88.83 | |
B:319 [VAL] | 4:115 [A] | 3.68 | 8.89 | |||
B:319 [VAL] | 4:116 [G] | 3.93 | 4:82 [U] | 8.89 | ||
B:332 [LYS] | 4:124 [A] | 3.73 | 4:73 [U] | 57.54 | ||
B:332 [LYS] | 4:125 [C] | 3.24 | 4:72 [G] | 57.54 | ||
B:333 [GLY] | 4:124 [A] | 3.84 | 4:73 [U] | 98.56 | ||
B:334 [SER] | 4:74 [OMG] | 3.06 | 4:123 [C] | base:SC | 96.65 | |
B:334 [SER] | 4:75 [C] | 3.28 | 4:122 [G] | 96.65 | ||
B:334 [SER] | 4:123 [C] | 4.94 | 4:74 [OMG] | 96.65 | ||
B:334 [SER] | 4:124 [A] | 3.98 | 4:73 [U] | 96.65 | ||
B:335 [VAL] | 4:74 [OMG] | 4.0 | 4:123 [C] | 72.79 | ||
B:335 [VAL] | 4:75 [C] | 3.22 | 4:122 [G] | 72.79 | ||
B:336 [SER] | 4:74 [OMG] | 2.66 | 4:123 [C] | sugar:SC | 64.76 | |
B:336 [SER] | 4:75 [C] | 3.75 | 4:122 [G] | 64.76 | ||
B:337 [GLY] | 4:74 [OMG] | 4.11 | 4:123 [C] | 98.58 | ||
B:337 [GLY] | 4:75 [C] | 2.84 | 4:122 [G] | 98.58 | ||
B:337 [GLY] | 4:76 [C] | 3.7 | 98.58 | |||
B:338 [PRO] | 4:75 [C] | 4.71 | 4:122 [G] | 79.23 | ||
B:338 [PRO] | 4:76 [C] | 4.41 | 79.23 | |||
B:339 [ARG] | 4:76 [C] | 4.68 | 39.99 | |||
B:339 [ARG] | 4:116 [G] | 3.27 | 4:82 [U] | 39.99 | ||
B:346 [ARG] | 4:164 [U] | 4.75 | 88.2 | |||
B:346 [ARG] | 4:165 [C] | 3.6 | 4:37 [G] | 88.2 | ||
B:349 [MET] | 4:127 [G] | 4.68 | 53.73 | |||
B:349 [MET] | 4:164 [U] | 3.64 | 53.73 | |||
B:349 [MET] | 4:165 [C] | 4.83 | 4:37 [G] | 53.73 | ||
B:350 [ALA] | 4:127 [G] | 3.67 | 89.9 | |||
B:351 [PRO] | 4:127 [G] | 3.5 | 36.82 | |||
B:351 [PRO] | 4:128 [U] | 3.33 | 4:162 [A] | 36.82 | ||
B:355 [ARG] | 4:65 [C] | 2.83 | 4:45 [G] | 1.33 | ||
B:355 [ARG] | 4:66 [C] | 2.6 | 4:44 [G] | 1.33 | ||
B:356 [HIS] | 4:125 [C] | 3.44 | 4:72 [G] | 16.99 | ||
B:367 [ASP] | 4:77 [U] | 4.35 | 67.15 | |||
B:370 [SER] | 4:78 [C] | 4.5 | 81.0 | |||
B:371 [LYS] | 4:77 [U] | 3.36 | sugar:SC | 46.35 | ||
B:371 [LYS] | 4:78 [C] | 4.59 | 46.35 | |||
B:371 [LYS] | 4:114 [A] | 4.86 | 4:83 [U] | 46.35 | ||
B:371 [LYS] | 4:115 [A] | 2.89 | 46.35 | |||
B:372 [ILE] | 4:114 [A] | 3.7 | 4:83 [U] | 55.44 | ||
B:372 [ILE] | 4:115 [A] | 3.74 | 55.44 | |||
B:373 [GLY] | 4:78 [C] | 4.11 | 57.28 | |||
B:373 [GLY] | 4:114 [A] | 3.22 | 4:83 [U] | 57.28 | ||
B:373 [GLY] | 4:115 [A] | 3.08 | 57.28 | |||
B:374 [HIS] | 4:79 [U] | 3.32 | 4:119 [A] | 43.87 | ||
B:374 [HIS] | 4:80 [A] | 4.67 | 4:118 [C] | 43.87 | ||
B:374 [HIS] | 4:113 [G] | 4.64 | 4:85 [C] | 43.87 | ||
B:374 [HIS] | 4:114 [A] | 3.46 | 4:83 [U] | 43.87 | ||
B:375 [GLY] | 4:78 [C] | 4.95 | 43.56 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group129 | 6AZ3_B_4 | B: Ribosomal protein ul3, Leishmania donovani (natural) 4: rRNA delta, Leishmania donovani (natural) | Alanine racemase-C | Eukaryotic large subunit ribosomal RNA | ✔ |
Interologs
Total number of interologs for this interface: 7
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
1YHQ_B_0 | 6AZ3_B_4 | 0.77 | 0.82 | 1.38 | 0.26 | Alanine racemase-C | compare | |
1VQ8_B_0 | 6AZ3_B_4 | 0.78 | 0.82 | 1.48 | 0.26 | Alanine racemase-C | compare | |
6AZ3_B_4 | 7O7Y_BB_B5 | 0.92 | 0.94 | 0.67 | 0.38 | Alanine racemase-C | Eukaryotic large subunit ribosomal RNA | compare |
6AZ3_B_4 | 6S0Z_D_A | 0.58 | 0.59 | 3.03 | 0.16 | Alanine racemase-C | compare | |
6AZ3_B_4 | 7K00_d_a | 0.48 | 0.59 | 3.5 | 0.14 | Alanine racemase-C | compare | |
6AZ3_B_4 | 7RYG_D_A | 0.53 | 0.59 | 3.16 | 0.14 | Alanine racemase-C | compare | |
4Y4O_1E_1A | 6AZ3_B_4 | 0.55 | 0.58 | 2.75 | 0.17 | Alanine racemase-C | compare |