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All interfaces > All interologs > Interface groups > group13 > 4RMO_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4RMO_A
4RMO_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:20 [PRO] B:1 [A] 2.95 base:BB 20.15
A:20 [PRO] B:2 [A] 4.05 20.15
A:21 [TYR] B:1 [A] 4.06 9.09
A:21 [TYR] B:2 [A] 2.85 base:BB 9.09
A:21 [TYR] B:3 [G] 3.99 9.09
A:22 [LEU] B:1 [A] 2.93 base:BB 76.9
A:22 [LEU] B:2 [A] 4.29 76.9
A:23 [LYS] B:1 [A] 3.71 79.08
A:23 [LYS] B:2 [A] 3.07 base:SC 79.08
A:23 [LYS] B:3 [G] 3.06 79.08
A:24 [GLY] B:1 [A] 3.02 base:BB 0.0
A:26 [LYS] B:1 [A] 2.84 sugar:SC 71.26
A:30 [ARG] B:1 [A] 2.8 99.0
A:39 [SER] B:26 [U] 4.31 B:7 [A] 26.16
A:40 [ASN] B:27 [A] 4.4 50.03
A:53 [ARG] B:1 [A] 3.05 69.18
A:53 [ARG] B:2 [A] 2.85 69.18
A:56 [LYS] B:2 [A] 2.94 96.69
A:56 [LYS] B:3 [G] 2.87 base:SC 96.69
A:56 [LYS] B:4 [U] 4.51 96.69
A:57 [TYR] B:2 [A] 3.56 77.3
A:57 [TYR] B:3 [G] 2.62 base:SC 77.3
A:57 [TYR] B:4 [U] 3.32 base:SC 77.3
A:60 [ILE] B:4 [U] 3.35 82.5
A:63 [LYS] B:4 [U] 2.85 sugar:SC 38.31
A:63 [LYS] B:5 [U] 4.08 38.31
A:64 [ARG] B:6 [U] 2.74 sugar:SC base/AA stacks 64.64
A:69 [ARG] B:6 [U] 3.35 55.3
A:69 [ARG] B:7 [A] 4.28 B:26 [U] 55.3
A:70 [ASN] B:6 [U] 3.89 37.07
A:71 [CYS] B:6 [U] 3.54 74.61
A:72 [ASP] B:6 [U] 2.64 base:SC, base:BB 73.46
A:73 [ILE] B:4 [U] 3.4 65.54
A:73 [ILE] B:6 [U] 3.45 base:BB 65.54
A:74 [ILE] B:4 [U] 4.45 82.84
A:88 [LEU] B:3 [G] 3.48 89.74
A:90 [GLN] B:3 [G] 3.07 base:SC 91.52
A:90 [GLN] B:4 [U] 2.69 base:SC, base:SC 91.52
A:91 [ASP] B:2 [A] 4.81 92.33
A:91 [ASP] B:3 [G] 2.76 base:SC, base:SC 92.33
A:124 [GLN] B:24 [G] 3.61 B:9 [C] 56.55
A:124 [GLN] B:25 [G] 3.83 B:8 [C] 56.55
A:127 [ARG] B:25 [G] 3.77 B:8 [C] 54.26
A:127 [ARG] B:26 [U] 3.55 B:7 [A] 54.26
A:128 [LYS] B:6 [U] 2.93 base:SC 62.44
A:128 [LYS] B:7 [A] 3.85 B:26 [U] 62.44
A:128 [LYS] B:26 [U] 3.49 B:7 [A] 62.44
A:130 [LEU] B:26 [U] 4.46 B:7 [A] 63.08
A:131 [GLY] B:7 [A] 4.13 B:26 [U] 48.12
A:131 [GLY] B:26 [U] 3.25 B:7 [A] 48.12
A:132 [MSE] B:6 [U] 2.69 71.55
A:132 [MSE] B:7 [A] 3.35 B:26 [U] 71.55
A:132 [MSE] B:26 [U] 4.59 B:7 [A] 71.55
A:134 [LYS] B:26 [U] 3.54 B:7 [A] 51.44
A:134 [LYS] B:27 [A] 2.92 51.44
A:135 [ARG] B:7 [A] 4.02 B:26 [U] 56.85
A:135 [ARG] B:8 [C] 3.69 B:25 [G] 56.85
A:135 [ARG] B:26 [U] 4.3 B:7 [A] 56.85
A:135 [ARG] B:27 [A] 2.83 base/AA stacks 56.85
A:137 [ILE] B:5 [U] 4.19 48.51
A:137 [ILE] B:6 [U] 4.4 48.51
A:137 [ILE] B:7 [A] 3.54 B:26 [U] 48.51
A:138 [LYS] B:5 [U] 2.66 sugar:BB 47.61
A:139 [PHE] B:4 [U] 3.41 39.2
A:139 [PHE] B:5 [U] 3.8 39.2
A:139 [PHE] B:6 [U] 3.86 39.2
A:140 [THR] B:3 [G] 3.66 23.39
A:140 [THR] B:4 [U] 3.39 23.39
A:140 [THR] B:5 [U] 3.74 23.39
A:141 [PRO] B:3 [G] 3.34 48.41
A:141 [PRO] B:4 [U] 3.78 48.41
A:141 [PRO] B:5 [U] 3.44 48.41
A:142 [THR] B:2 [A] 3.93 63.56
A:142 [THR] B:3 [G] 2.63 base:BB, base:SC, sugar:SC 63.56
A:143 [GLN] B:3 [G] 4.57 70.0
A:144 [PRO] B:3 [G] 4.22 66.44

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group13 4RMO_A_B A: Cptn toxin, Eubacterium rectale dsm 17629 (genetically engineered) B: RNA (45-mer), Synthetic construct (synthetic) D6E269 SH3 ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4RMO_A_B 7D8O_A_B 0.30 0.63 2.16 0.0 SH3 compare