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All interfaces > All interologs > Interface groups > group130 > 3AVX_A_G,T

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

3AVX_A
3AVX_G,T
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:573 [ARG] T:4122 [A] 3.19 sugar:SC 75.55
A:616 [TYR] T:4122 [A] 4.63 48.18
A:619 [THR] T:4122 [A] 2.93 sugar:BB 91.83
A:620 [THR] T:4122 [A] 3.39 16.06
A:621 [ASP] T:4122 [A] 4.44 68.12
A:662 [ARG] T:4122 [A] 3.11 base:SC 88.19
A:664 [GLY] T:4120 [C] 3.67 G:2002 [G] 74.48
A:664 [GLY] T:4122 [A] 4.63 74.48
A:665 [GLY] T:4122 [A] 4.34 66.49
A:666 [ARG] T:4118 [A] 4.5 G:2004 [U] 57.45
A:666 [ARG] T:4119 [C] 3.84 G:2003 [G] 57.45
A:847 [ARG] G:2002 [G] 4.98 T:4120 [C] 59.36
A:847 [ARG] T:4113 [G] 4.73 G:2009 [C] 59.36
A:847 [ARG] T:4114 [A] 2.34 G:2008 [U] 59.36
A:848 [PHE] G:2002 [G] 4.83 T:4120 [C] 81.36
A:849 [SER] G:2001 [G] 4.98 T:4121 [C] 93.18
A:849 [SER] G:2002 [G] 2.84 T:4120 [C] 93.18
A:849 [SER] T:4112 [C] 4.91 A:2501 [GH3] 93.18
A:849 [SER] T:4113 [G] 2.53 G:2009 [C] 93.18
A:849 [SER] T:4114 [A] 3.32 G:2008 [U] 93.18
A:850 [GLY] G:2002 [G] 4.76 T:4120 [C] 84.61
A:850 [GLY] G:2003 [G] 3.72 T:4119 [C] 84.61
A:850 [GLY] T:4113 [G] 3.61 G:2009 [C] 84.61
A:851 [GLY] G:2003 [G] 4.95 T:4119 [C] 98.7
A:851 [GLY] T:4112 [C] 3.1 A:2501 [GH3] 98.7
A:851 [GLY] T:4113 [G] 2.73 G:2009 [C] 98.7
A:852 [ALA] T:4111 [A] 3.56 92.94
A:852 [ALA] T:4112 [C] 2.83 A:2501 [GH3] 92.94
A:852 [ALA] T:4113 [G] 4.41 G:2009 [C] 92.94
A:856 [ASN] T:4111 [A] 4.08 55.66
A:857 [ASN] T:4110 [A] 3.85 59.92
A:857 [ASN] T:4111 [A] 3.16 59.92
A:858 [ARG] G:2003 [G] 4.61 T:4119 [C] 78.85
A:858 [ARG] G:2004 [U] 3.45 T:4118 [A] 78.85
A:858 [ARG] T:4110 [A] 4.94 78.85
A:858 [ARG] T:4111 [A] 2.63 78.85
A:858 [ARG] T:4112 [C] 2.89 A:2501 [GH3] 78.85
A:858 [ARG] T:4113 [G] 4.89 G:2009 [C] 78.85
A:859 [SER] T:4111 [A] 4.57 55.65
A:862 [HIS] G:2002 [G] 3.37 T:4120 [C] sugar:SC 77.88
A:863 [PRO] G:2002 [G] 3.99 T:4120 [C] 68.51
A:866 [LYS] T:4113 [G] 4.36 G:2009 [C] 98.87
A:904 [VAL] T:4111 [A] 4.79 79.09
A:905 [THR] T:4111 [A] 4.96 88.95
A:906 [VAL] T:4111 [A] 3.81 98.97
A:906 [VAL] T:4112 [C] 3.93 A:2501 [GH3] 98.97
A:907 [PRO] T:4111 [A] 3.61 94.96
A:916 [ILE] T:4111 [A] 3.91 98.16
A:916 [ILE] T:4112 [C] 2.91 A:2501 [GH3] 98.16
A:917 [ALA] T:4112 [C] 3.63 A:2501 [GH3] sugar:BB 85.63
A:918 [ILE] T:4111 [A] 4.58 81.64
A:918 [ILE] T:4112 [C] 3.95 A:2501 [GH3] 81.64
A:919 [GLU] T:4112 [C] 4.66 A:2501 [GH3] 96.49
A:924 [MET] T:4112 [C] 4.98 A:2501 [GH3] 78.13
A:924 [MET] T:4113 [G] 3.46 G:2009 [C] 78.13
A:928 [LEU] T:4113 [G] 3.58 G:2009 [C] 83.01
A:928 [LEU] T:4114 [A] 3.84 G:2008 [U] 83.01
A:935 [ARG] T:4114 [A] 3.01 G:2008 [U] sugar:SC 93.5
A:935 [ARG] T:4115 [U] 3.52 G:2007 [A] 93.5
A:945 [LEU] T:4114 [A] 4.56 G:2008 [U] 95.04
A:945 [LEU] T:4115 [U] 3.71 G:2007 [A] 95.04
A:946 [ASN] T:4115 [U] 2.99 G:2007 [A] 78.35
A:946 [ASN] T:4116 [G] 3.48 G:2006 [C] 78.35
A:947 [ASP] T:4115 [U] 4.25 G:2007 [A] 83.93
A:948 [GLN] G:2007 [A] 4.74 T:4115 [U] 96.79
A:948 [GLN] G:2008 [U] 2.54 T:4114 [A] base:SC, sugar:SC 96.79
A:948 [GLN] G:2009 [C] 4.92 T:4113 [G] 96.79
A:948 [GLN] T:4115 [U] 3.0 G:2007 [A] 96.79
A:1017 [MET] T:4112 [C] 3.69 A:2501 [GH3] 0.0
A:1018 [GLY] T:4112 [C] 2.76 A:2501 [GH3] sugar:BB 0.0
A:1018 [GLY] T:4113 [G] 3.14 G:2009 [C] 0.0
A:1019 [ASN] T:4112 [C] 4.6 A:2501 [GH3] 0.0
A:1019 [ASN] T:4113 [G] 4.0 G:2009 [C] 0.0
A:1020 [GLY] T:4113 [G] 3.66 G:2009 [C] 0.0
A:1023 [PHE] G:2009 [C] 3.39 T:4113 [G] 0.0
A:1023 [PHE] T:4113 [G] 3.84 G:2009 [C] 0.0
A:1023 [PHE] T:4114 [A] 4.18 G:2008 [U] 0.0
A:1024 [GLU] T:4114 [A] 4.36 G:2008 [U] 0.0
A:1051 [TYR] G:2009 [C] 3.55 T:4113 [G] sugar:BB 0.0
A:1051 [TYR] T:4114 [A] 4.68 G:2008 [U] 0.0
A:1051 [TYR] T:4115 [U] 3.14 G:2007 [A] sugar:SC 0.0
A:1052 [GLY] G:2009 [C] 3.34 T:4113 [G] 0.0
A:1053 [ASP] G:2009 [C] 3.16 T:4113 [G] sugar:BB 0.0
A:1054 [ASP] G:2009 [C] 3.2 T:4113 [G] 0.0
A:1080 [LYS] G:2009 [C] 4.56 T:4113 [G] 0.0
A:1089 [GLU] G:2009 [C] 4.0 T:4113 [G] 0.0
A:1091 [CYS] G:2008 [U] 3.27 T:4114 [A] 0.0
A:1091 [CYS] G:2009 [C] 3.76 T:4113 [G] 0.0
A:1092 [GLY] G:2007 [A] 4.68 T:4115 [U] 0.0
A:1092 [GLY] G:2008 [U] 3.27 T:4114 [A] 0.0
A:1092 [GLY] G:2009 [C] 3.95 T:4113 [G] 0.0
A:1094 [HIS] G:2008 [U] 4.93 T:4114 [A] 0.0
A:1102 [THR] G:2008 [U] 4.57 T:4114 [A] 0.0
A:1103 [PRO] G:2008 [U] 4.13 T:4114 [A] 0.0
A:1105 [TYR] G:2007 [A] 3.85 T:4115 [U] 0.0
A:1105 [TYR] G:2008 [U] 3.38 T:4114 [A] 0.0
A:1107 [ARG] G:2007 [A] 3.51 T:4115 [U] 0.0
A:1107 [ARG] G:2008 [U] 3.96 T:4114 [A] 0.0
A:1108 [HIS] G:2006 [C] 4.97 T:4116 [G] 0.0
A:1118 [LEU] G:2005 [C] 4.8 T:4117 [G] 0.0
A:1118 [LEU] G:2006 [C] 3.26 T:4116 [G] 0.0
A:1118 [LEU] G:2007 [A] 4.2 T:4115 [U] 0.0
A:1122 [ASN] G:2006 [C] 4.18 T:4116 [G] 0.0
A:1122 [ASN] G:2007 [A] 3.15 T:4115 [U] 0.0
A:1160 [GLY] T:4118 [A] 2.93 G:2004 [U] 0.0
A:1161 [TYR] T:4118 [A] 3.08 G:2004 [U] 0.0
A:1161 [TYR] T:4119 [C] 3.53 G:2003 [G] 0.0
A:1162 [GLY] T:4118 [A] 3.63 G:2004 [U] 0.0
A:1163 [ASP] G:2005 [C] 4.43 T:4117 [G] 0.0
A:1163 [ASP] G:2006 [C] 3.69 T:4116 [G] 0.0
A:1187 [VAL] T:4119 [C] 4.71 G:2003 [G] 0.0
A:1189 [THR] T:4119 [C] 4.69 G:2003 [G] 0.0
A:1190 [ASP] G:2004 [U] 3.27 T:4118 [A] 0.0
A:1190 [ASP] G:2005 [C] 4.18 T:4117 [G] 0.0
A:1205 [TYR] G:2001 [G] 2.98 T:4121 [C] sugar:SC 0.0
A:1205 [TYR] G:2002 [G] 4.32 T:4120 [C] 0.0
A:1242 [SER] G:2001 [G] 4.06 T:4121 [C] 0.0
A:1243 [ASN] G:2001 [G] 3.33 T:4121 [C] 0.0
A:1243 [ASN] T:4121 [C] 3.2 G:2001 [G] 0.0
A:1243 [ASN] T:4122 [A] 3.63 0.0
A:1244 [PRO] G:2001 [G] 3.25 T:4121 [C] base:BB 0.0
A:1244 [PRO] T:4122 [A] 4.18 0.0
A:1246 [LYS] G:2002 [G] 4.87 T:4120 [C] 0.0
A:1246 [LYS] T:4121 [C] 3.83 G:2001 [G] 0.0
A:1246 [LYS] T:4122 [A] 4.72 0.0
A:1248 [SER] G:2003 [G] 3.99 T:4119 [C] 0.0
A:1250 [SER] G:2004 [U] 3.94 T:4118 [A] 0.0
A:1257 [GLN] T:4120 [C] 3.33 G:2002 [G] 0.0
A:1257 [GLN] T:4121 [C] 3.82 G:2001 [G] 0.0
A:1258 [TYR] T:4120 [C] 4.56 G:2002 [G] 0.0
A:1259 [ILE] T:4119 [C] 3.46 G:2003 [G] 0.0
A:1259 [ILE] T:4120 [C] 3.98 G:2002 [G] 0.0
A:1260 [ALA] T:4119 [C] 4.91 G:2003 [G] 0.0
A:1260 [ALA] T:4120 [C] 4.44 G:2002 [G] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group130 3AVX_A_G,T A: Elongation factor ts, elongation factor tu, linker, q beta replicase, Escherichia coli o157:h7 (genetically engineered) G: N/A T: N/A P0A6P3 Alanine racemase-C & Aminomethyltransferase beta-barrel domain & Adenylyl and guanylyl cyclase catalytic domain-like & helical bundle domain in reverse transcriptase-like polymerases ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3AVX_A_G,T 5F8H_A_B,C 0.63 0.61 2.25 0.06 Adenylyl and guanylyl cyclase catalytic domain-like & helical bundle domain in reverse transcriptase-like polymerases compare
3AVX_A_G,T 6LSF_A_B,C 0.58 0.61 2.84 0.1 Adenylyl and guanylyl cyclase catalytic domain-like & helical bundle domain in reverse transcriptase-like polymerases compare
3AVX_A_G,T 3OL9_A_B,C 0.59 0.6 2.61 0.09 Adenylyl and guanylyl cyclase catalytic domain-like & helical bundle domain in reverse transcriptase-like polymerases compare
3AVX_A_G,T 5Y6Z_A_B,C 0.52 0.61 2.95 0.1 Adenylyl and guanylyl cyclase catalytic domain-like & helical bundle domain in reverse transcriptase-like polymerases compare
3AVX_A_G,T 4K4Z_E_F,G 0.61 0.61 2.51 0.09 Adenylyl and guanylyl cyclase catalytic domain-like & helical bundle domain in reverse transcriptase-like polymerases compare