RNAprotDB

All interfaces > All interologs > Interface groups > group131 > 1YHQ_A_0

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1YHQ_A
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:1 [GLY] 0:869 [G] 4.9 87.53
A:1 [GLY] 0:886 [A] 2.98 base:BB 87.53
A:1 [GLY] 0:2114 [C] 3.12 0:2471 [G] 87.53
A:1 [GLY] 0:2115 [U] 4.87 0:2470 [A] 87.53
A:1 [GLY] 0:2273 [C] 2.72 0:2121 [G] 87.53
A:1 [GLY] 0:2274 [A] 4.47 0:2120 [U] 87.53
A:2 [ARG] 0:871 [G] 2.73 0:879 [C] base:SC 93.78
A:2 [ARG] 0:872 [U] 3.0 0:878 [G] base:SC 93.78
A:2 [ARG] 0:873 [G] 3.43 0:876 [A] base/AA stacks 93.78
A:2 [ARG] 0:877 [G] 4.24 93.78
A:2 [ARG] 0:878 [G] 2.94 0:872 [U] base:SC 93.78
A:2 [ARG] 0:879 [C] 3.66 0:871 [G] 93.78
A:2 [ARG] 0:886 [A] 3.84 93.78
A:2 [ARG] 0:2114 [C] 4.94 0:2471 [G] 93.78
A:2 [ARG] 0:2273 [C] 4.05 0:2121 [G] 93.78
A:3 [ARG] 0:870 [G] 2.75 0:880 [C] 74.71
A:3 [ARG] 0:871 [G] 3.33 0:879 [C] 74.71
A:3 [ARG] 0:873 [G] 4.62 0:876 [A] 74.71
A:3 [ARG] 0:1862 [C] 2.96 0:1867 [G] 74.71
A:3 [ARG] 0:1863 [G] 2.8 0:1866 [A] 74.71
A:4 [ILE] 0:1881 [A] 4.65 0:1850 [U] 79.83
A:5 [GLN] 0:875 [A] 4.24 50.89
A:6 [GLY] 0:1861 [C] 2.83 0:1868 [G] sugar:BB 51.53
A:6 [GLY] 0:1880 [C] 3.63 0:1851 [G] 51.53
A:7 [GLN] 0:871 [G] 4.67 0:879 [C] 87.46
A:7 [GLN] 0:1861 [C] 3.46 0:1868 [G] 87.46
A:7 [GLN] 0:1862 [C] 2.91 0:1867 [G] 87.46
A:7 [GLN] 0:2272 [G] 4.82 0:2122 [C] 87.46
A:8 [ARG] 0:871 [G] 2.83 0:879 [C] 87.89
A:8 [ARG] 0:872 [U] 2.87 0:878 [G] base:SC 87.89
A:8 [ARG] 0:873 [G] 2.77 0:876 [A] base:SC 87.89
A:8 [ARG] 0:1861 [C] 4.91 0:1868 [G] 87.89
A:9 [ARG] 0:1860 [U] 2.81 0:1869 [A] base:SC 89.61
A:9 [ARG] 0:1861 [C] 4.23 0:1868 [G] 89.61
A:9 [ARG] 0:1869 [A] 3.75 0:1860 [U] 89.61
A:9 [ARG] 0:1870 [C] 3.46 0:1859 [A] sugar:SC 89.61
A:9 [ARG] 0:1879 [U] 3.28 0:1852 [A] 89.61
A:9 [ARG] 0:1880 [C] 3.4 0:1851 [G] 89.61
A:10 [GLY] 0:1861 [C] 2.99 0:1868 [G] sugar:BB 93.21
A:10 [GLY] 0:1862 [C] 3.23 0:1867 [G] 93.21
A:10 [GLY] 0:1868 [G] 2.85 0:1861 [C] base:BB 93.21
A:10 [GLY] 0:1869 [A] 3.93 0:1860 [U] 93.21
A:11 [ARG] 0:866 [U] 3.04 0:780 [A] sugar:SC 62.39
A:11 [ARG] 0:867 [A] 2.87 62.39
A:11 [ARG] 0:870 [G] 4.62 0:880 [C] 62.39
A:11 [ARG] 0:871 [G] 3.59 0:879 [C] 62.39
A:11 [ARG] 0:872 [U] 4.47 0:878 [G] 62.39
A:11 [ARG] 0:1861 [C] 4.92 0:1868 [G] 62.39
A:11 [ARG] 0:1862 [C] 3.56 0:1867 [G] 62.39
A:11 [ARG] 0:1868 [G] 4.85 0:1861 [C] 62.39
A:11 [ARG] 0:1869 [A] 4.75 0:1860 [U] 62.39
A:12 [GLY] 0:1869 [A] 3.37 0:1860 [U] 91.59
A:13 [THR] 0:866 [U] 3.57 0:780 [A] 76.87
A:13 [THR] 0:871 [G] 4.52 0:879 [C] 76.87
A:13 [THR] 0:872 [U] 2.76 0:878 [G] 76.87
A:14 [SER] 0:782 [G] 2.71 0:864 [U] base:SC, sugar:SC 33.87
A:14 [SER] 0:783 [C] 3.57 0:863 [G] sugar:SC 33.87
A:14 [SER] 0:865 [G] 4.38 0:781 [C] 33.87
A:15 [THR] 0:781 [C] 3.05 0:865 [G] sugar:SC 39.25
A:15 [THR] 0:782 [G] 3.36 0:864 [U] sugar:SC 39.25
A:15 [THR] 0:865 [G] 4.35 0:781 [C] 39.25
A:15 [THR] 0:872 [U] 4.37 0:878 [G] 39.25
A:15 [THR] 0:873 [G] 3.74 0:876 [A] 39.25
A:16 [PHE] 0:872 [U] 3.71 0:878 [G] 48.71
A:16 [PHE] 0:873 [G] 4.59 0:876 [A] 48.71
A:16 [PHE] 0:1869 [A] 4.09 0:1860 [U] 48.71
A:16 [PHE] 0:1870 [C] 3.49 0:1859 [A] 48.71
A:17 [ARG] 0:865 [G] 4.24 0:781 [C] 72.26
A:17 [ARG] 0:1459 [A] 4.85 0:1484 [G] 72.26
A:17 [ARG] 0:1460 [G] 2.72 0:1483 [C] 72.26
A:17 [ARG] 0:1869 [A] 3.31 0:1860 [U] 72.26
A:17 [ARG] 0:1870 [C] 3.4 0:1859 [A] 72.26
A:18 [ALA] 0:1869 [A] 4.82 0:1860 [U] 64.33
A:18 [ALA] 0:1870 [C] 2.84 0:1859 [A] 64.33
A:18 [ALA] 0:1871 [U] 3.66 0:1858 [A] 64.33
A:18 [ALA] 0:1872 [C] 3.99 64.33
A:20 [SER] 0:1870 [C] 4.47 0:1859 [A] 65.34
A:20 [SER] 0:1871 [U] 4.45 0:1858 [A] 65.34
A:20 [SER] 0:1872 [C] 2.44 base:BB 65.34
A:21 [HIS] 0:783 [C] 3.29 0:863 [G] 55.19
A:21 [HIS] 0:784 [A] 2.69 0:862 [U] 55.19
A:21 [HIS] 0:1459 [A] 4.02 0:1484 [G] 55.19
A:21 [HIS] 0:1872 [C] 4.59 55.19
A:22 [ARG] 0:783 [C] 3.89 0:863 [G] 54.46
A:22 [ARG] 0:784 [A] 3.13 0:862 [U] 54.46
A:22 [ARG] 0:1654 [U] 4.46 54.46
A:22 [ARG] 0:1655 [G] 4.62 0:1651 [C] 54.46
A:23 [TYR] 0:1871 [U] 4.16 0:1858 [A] 48.92
A:23 [TYR] 0:1872 [C] 3.48 48.92
A:24 [LYS] 0:1654 [U] 3.47 sugar:SC 0.8
A:24 [LYS] 0:1655 [G] 4.2 0:1651 [C] 0.8
A:24 [LYS] 0:1872 [C] 3.81 0.8
A:25 [ALA] 0:1872 [C] 3.06 38.1
A:25 [ALA] 0:1873 [G] 4.25 0:1856 [C] 38.1
A:26 [ASP] 0:1872 [C] 3.01 base:BB 16.02
A:26 [ASP] 0:1873 [G] 3.61 0:1856 [C] 16.02
A:27 [LEU] 0:1872 [C] 4.78 51.45
A:27 [LEU] 0:1873 [G] 4.33 0:1856 [C] 51.45
A:31 [LYS] 0:2249 [G] 4.64 0:2252 [A] 6.17
A:31 [LYS] 0:2250 [G] 2.97 6.17
A:32 [VAL] 0:2250 [G] 4.6 43.04
A:33 [GLU] 0:2250 [G] 3.8 48.7
A:33 [GLU] 0:2251 [G] 4.73 48.7
A:47 [HIS] 0:1653 [A] 3.2 77.46
A:47 [HIS] 0:1654 [U] 3.01 base/AA stacks 77.46
A:48 [ASP] 0:1872 [C] 4.89 83.7
A:49 [PRO] 0:1654 [U] 3.5 74.33
A:49 [PRO] 0:1655 [G] 4.24 0:1651 [C] 74.33
A:50 [ALA] 0:1872 [C] 3.98 68.91
A:50 [ALA] 0:1873 [G] 3.88 0:1856 [C] 68.91
A:50 [ALA] 0:1878 [G] 4.88 0:1853 [C] 68.91
A:51 [ARG] 0:1873 [G] 3.36 0:1856 [C] 85.91
A:51 [ARG] 0:1874 [U] 3.17 0:1855 [G] 85.91
A:52 [SER] 0:1652 [C] 3.32 62.98
A:52 [SER] 0:1653 [A] 2.71 62.98
A:110 [SER] 0:1856 [C] 4.59 0:1873 [G] 10.49
A:110 [SER] 0:1857 [A] 2.86 10.49
A:111 [SER] 0:2248 [C] 3.16 0:2253 [G] sugar:SC 37.37
A:112 [PRO] 0:2248 [C] 3.06 0:2253 [G] sugar:BB 72.47
A:112 [PRO] 0:2249 [G] 4.18 0:2252 [A] 72.47
A:112 [PRO] 0:2254 [G] 4.84 0:2247 [C] 72.47
A:113 [GLY] 0:2248 [C] 4.6 0:2253 [G] 64.73
A:113 [GLY] 0:2249 [G] 3.29 0:2252 [A] 64.73
A:114 [ASP] 0:2248 [C] 4.35 0:2253 [G] 66.5
A:114 [ASP] 0:2249 [G] 4.08 0:2252 [A] 66.5
A:116 [GLY] 0:1874 [U] 4.94 0:1855 [G] 78.57
A:117 [LYS] 0:1855 [G] 4.18 0:1874 [U] 63.99
A:117 [LYS] 0:1856 [C] 3.86 0:1873 [G] 63.99
A:117 [LYS] 0:1857 [A] 3.99 63.99
A:117 [LYS] 0:1874 [U] 2.65 0:1855 [G] sugar:BB 63.99
A:118 [PHE] 0:1855 [G] 3.37 0:1874 [U] 34.84
A:118 [PHE] 0:1856 [C] 4.25 0:1873 [G] 34.84
A:118 [PHE] 0:1874 [U] 3.45 0:1855 [G] 34.84
A:118 [PHE] 0:1875 [A] 4.09 34.84
A:119 [ALA] 0:1855 [G] 4.32 0:1874 [U] 67.45
A:119 [ALA] 0:1874 [U] 3.21 0:1855 [G] 67.45
A:119 [ALA] 0:1875 [A] 3.01 67.45
A:120 [ARG] 0:1872 [C] 4.98 92.24
A:120 [ARG] 0:1873 [G] 2.76 0:1856 [C] 92.24
A:120 [ARG] 0:1874 [U] 2.87 0:1855 [G] 92.24
A:120 [ARG] 0:1875 [A] 2.88 92.24
A:121 [ALA] 0:1874 [U] 3.62 0:1855 [G] 79.0
A:121 [ALA] 0:1875 [A] 3.04 79.0
A:121 [ALA] 0:1876 [C] 3.41 79.0
A:121 [ALA] 0:1877 [G] 4.07 0:1854 [C] 79.0
A:122 [SER] 0:1876 [C] 3.04 sugar:BB 85.09
A:123 [GLY] 0:1876 [C] 3.21 98.41
A:124 [VAL] 0:1875 [A] 3.5 68.8
A:124 [VAL] 0:1876 [C] 3.69 68.8
A:140 [LEU] 0:1855 [G] 3.69 0:1874 [U] 81.32
A:141 [PRO] 0:1855 [G] 3.23 0:1874 [U] 82.15
A:141 [PRO] 0:1875 [A] 3.5 82.15
A:141 [PRO] 0:1876 [C] 3.75 82.15
A:142 [SER] 0:1855 [G] 2.57 0:1874 [U] base:SC, base:BB 99.0
A:142 [SER] 0:1875 [A] 3.21 99.0
A:144 [GLU] 0:1855 [G] 2.58 0:1874 [U] sugar:SC 73.41
A:146 [LYS] 0:1855 [G] 2.84 0:1874 [U] sugar:SC 70.98
A:146 [LYS] 0:1856 [C] 2.92 0:1873 [G] 70.98
A:149 [ASP] 0:2254 [G] 3.85 0:2247 [C] sugar:SC 61.07
A:149 [ASP] 0:2255 [A] 4.23 0:2246 [U] 61.07
A:161 [GLY] 0:1876 [C] 4.36 83.68
A:162 [GLY] 0:1876 [C] 3.51 42.91
A:163 [GLY] 0:1876 [C] 2.79 base:BB 64.15
A:164 [ARG] 0:1652 [C] 2.97 56.14
A:164 [ARG] 0:1876 [C] 2.86 base:BB, sugar:SC 56.14
A:164 [ARG] 0:1877 [G] 3.01 0:1854 [C] 56.14
A:165 [THR] 0:1652 [C] 3.84 36.36
A:165 [THR] 0:1876 [C] 3.5 base:BB, sugar:SC 36.36
A:165 [THR] 0:1877 [G] 4.31 0:1854 [C] 36.36
A:167 [LYS] 0:1651 [C] 4.28 0:1655 [G] 63.01
A:167 [LYS] 0:1652 [C] 2.85 base:BB 63.01
A:167 [LYS] 0:1848 [G] 4.65 0:1883 [U] 63.01
A:168 [PRO] 0:1652 [C] 4.71 69.96
A:168 [PRO] 0:1847 [A] 4.43 0:1884 [G] 69.96
A:168 [PRO] 0:1848 [G] 3.27 0:1883 [U] 69.96
A:169 [PHE] 0:1652 [C] 3.37 base/AA stacks 51.82
A:169 [PHE] 0:1847 [A] 3.43 0:1884 [G] 51.82
A:169 [PHE] 0:1848 [G] 3.04 0:1883 [U] 51.82
A:170 [VAL] 0:820 [G] 4.68 0:1830 [C] 52.33
A:170 [VAL] 0:1847 [A] 3.04 0:1884 [G] sugar:BB 52.33
A:170 [VAL] 0:1848 [G] 4.62 0:1883 [U] 52.33
A:171 [LYS] 0:819 [A] 4.53 0:794 [U] 88.33
A:171 [LYS] 0:820 [G] 2.49 0:1830 [C] 88.33
A:171 [LYS] 0:857 [A] 4.68 0:1831 [U] 88.33
A:171 [LYS] 0:1846 [U] 4.23 88.33
A:171 [LYS] 0:1847 [A] 4.0 0:1884 [G] 88.33
A:172 [ALA] 0:820 [G] 2.91 0:1830 [C] base:BB 98.56
A:172 [ALA] 0:857 [A] 3.42 0:1831 [U] 98.56
A:172 [ALA] 0:1831 [U] 4.7 0:857 [A] 98.56
A:172 [ALA] 0:1846 [U] 3.05 98.56
A:172 [ALA] 0:1847 [A] 4.07 0:1884 [G] 98.56
A:173 [GLY] 0:820 [G] 2.86 0:1830 [C] base:BB 96.53
A:173 [GLY] 0:857 [A] 3.3 0:1831 [U] 96.53
A:174 [ASN] 0:857 [A] 4.58 0:1831 [U] 45.62
A:174 [ASN] 0:1652 [C] 4.92 45.62
A:175 [LYS] 0:1846 [U] 4.77 63.23
A:175 [LYS] 0:1847 [A] 2.77 0:1884 [G] 63.23
A:175 [LYS] 0:1848 [G] 4.62 0:1883 [U] 63.23
A:176 [HIS] 0:857 [A] 3.54 0:1831 [U] 70.39
A:176 [HIS] 0:858 [U] 4.31 0:788 [A] 70.39
A:177 [HIS] 0:857 [A] 2.93 0:1831 [U] 56.05
A:177 [HIS] 0:1653 [A] 3.21 base/AA stacks 56.05
A:178 [LYS] 0:1652 [C] 2.83 base:SC 39.51
A:178 [LYS] 0:1653 [A] 3.93 39.51
A:178 [LYS] 0:1877 [G] 3.92 0:1854 [C] 39.51
A:178 [LYS] 0:1878 [G] 4.27 0:1853 [C] 39.51
A:180 [LYS] 0:783 [C] 3.33 0:863 [G] 61.09
A:181 [ALA] 0:1653 [A] 4.67 87.56
A:181 [ALA] 0:1654 [U] 3.97 87.56
A:182 [ARG] 0:1871 [U] 4.08 0:1858 [A] 59.82
A:182 [ARG] 0:1878 [G] 3.02 0:1853 [C] 59.82
A:183 [GLY] 0:1870 [C] 3.38 0:1859 [A] 67.23
A:183 [GLY] 0:1871 [U] 3.0 0:1858 [A] 67.23
A:183 [GLY] 0:1879 [U] 3.53 0:1852 [A] 67.23
A:184 [THR] 0:1878 [G] 4.77 0:1853 [C] 68.23
A:184 [THR] 0:1879 [U] 3.17 0:1852 [A] 68.23
A:185 [LYS] 0:781 [C] 4.2 0:865 [G] 0.18
A:185 [LYS] 0:873 [G] 2.7 0:876 [A] 0.18
A:185 [LYS] 0:874 [A] 2.92 0.18
A:186 [TRP] 0:857 [A] 3.62 0:1831 [U] 73.16
A:186 [TRP] 0:1846 [U] 3.57 73.16
A:186 [TRP] 0:1847 [A] 3.43 0:1884 [G] 73.16
A:187 [PRO] 0:857 [A] 4.38 0:1831 [U] 90.51
A:187 [PRO] 0:874 [A] 3.25 90.51
A:187 [PRO] 0:1845 [A] 3.11 90.51
A:187 [PRO] 0:1846 [U] 3.65 90.51
A:188 [ASN] 0:1845 [A] 3.4 41.29
A:188 [ASN] 0:1846 [U] 2.76 41.29
A:188 [ASN] 0:1884 [G] 4.54 0:1847 [A] 41.29
A:189 [VAL] 0:874 [A] 3.48 90.26
A:189 [VAL] 0:875 [A] 3.49 90.26
A:189 [VAL] 0:1844 [C] 4.01 0:1832 [G] 90.26
A:189 [VAL] 0:1845 [A] 3.36 90.26
A:189 [VAL] 0:1882 [C] 4.89 0:1849 [G] 90.26
A:190 [ARG] 0:1844 [C] 3.34 0:1832 [G] 91.93
A:190 [ARG] 0:1845 [A] 2.7 91.93
A:190 [ARG] 0:1882 [C] 3.23 0:1849 [G] 91.93
A:190 [ARG] 0:1883 [U] 2.85 0:1848 [G] 91.93
A:190 [ARG] 0:1884 [G] 2.9 0:1847 [A] 91.93
A:191 [GLY] 0:1881 [A] 4.47 0:1850 [U] 91.18
A:191 [GLY] 0:1882 [C] 3.01 0:1849 [G] 91.18
A:192 [VAL] 0:1882 [C] 2.78 0:1849 [G] 79.49
A:192 [VAL] 0:1883 [U] 4.83 0:1848 [G] 79.49
A:193 [ALA] 0:875 [A] 3.02 91.75
A:193 [ALA] 0:876 [A] 4.02 0:873 [G] 91.75
A:193 [ALA] 0:1844 [C] 3.81 0:1832 [G] 91.75
A:193 [ALA] 0:1845 [A] 4.77 91.75
A:194 [MET] 0:875 [A] 3.1 87.38
A:195 [ASN] 0:876 [A] 4.25 0:873 [G] 94.14
A:195 [ASN] 0:877 [G] 3.01 sugar:SC base/AA stacks 94.14
A:196 [ALA] 0:2114 [C] 3.91 0:2471 [G] 87.28
A:196 [ALA] 0:2115 [U] 3.62 0:2470 [A] 87.28
A:196 [ALA] 0:2633 [A] 4.38 0:2630 [G] 87.28
A:197 [VAL] 0:877 [G] 3.45 71.9
A:197 [VAL] 0:886 [A] 4.56 71.9
A:197 [VAL] 0:2113 [G] 4.92 0:2472 [C] 71.9
A:197 [VAL] 0:2114 [C] 3.6 0:2471 [G] 71.9
A:197 [VAL] 0:2115 [U] 4.81 0:2470 [A] 71.9
A:198 [ASP] 0:873 [G] 3.11 0:876 [A] base:SC, base:SC 78.84
A:198 [ASP] 0:875 [A] 3.59 78.84
A:199 [HIS] 0:1881 [A] 2.94 0:1850 [U] 98.79
A:200 [PRO] 0:2116 [U] 4.97 92.31
A:200 [PRO] 0:2272 [G] 4.51 0:2122 [C] 92.31
A:201 [PHE] 0:1881 [A] 3.66 0:1850 [U] 82.77
A:201 [PHE] 0:1882 [C] 3.63 0:1849 [G] 82.77
A:202 [GLY] 0:2633 [A] 4.18 0:2630 [G] 96.17
A:203 [GLY] 0:2633 [A] 3.23 0:2630 [G] 92.75
A:203 [GLY] 0:2634 [G] 3.28 0:2629 [C] 92.75
A:204 [GLY] 0:2633 [A] 2.89 0:2630 [G] 78.45
A:204 [GLY] 0:2634 [G] 2.44 0:2629 [C] 78.45
A:205 [GLY] 0:2625 [C] 3.64 0:2639 [G] 69.72
A:205 [GLY] 0:2634 [G] 3.08 0:2629 [C] base:BB 69.72
A:206 [ARG] 0:2625 [C] 4.62 0:2639 [G] 69.36
A:206 [ARG] 0:2626 [C] 3.74 0:2638 [G] 69.36
A:206 [ARG] 0:2628 [U] 4.52 0:2635 [A] 69.36
A:206 [ARG] 0:2629 [C] 3.73 0:2634 [G] 69.36
A:206 [ARG] 0:2630 [G] 2.49 0:2633 [A] base:SC 69.36
A:206 [ARG] 0:2632 [G] 4.79 69.36
A:206 [ARG] 0:2634 [G] 4.16 0:2629 [C] 69.36
A:207 [GLN] 0:1843 [A] 3.98 0:1833 [U] 68.51
A:207 [GLN] 0:1844 [C] 2.95 0:1832 [G] 68.51
A:207 [GLN] 0:1883 [U] 4.44 0:1848 [G] 68.51
A:207 [GLN] 0:2012 [U] 3.51 sugar:BB 68.51
A:207 [GLN] 0:2625 [C] 3.54 0:2639 [G] 68.51
A:207 [GLN] 0:2626 [C] 4.96 0:2638 [G] 68.51
A:208 [HIS] 0:1943 [C] 4.74 0:1896 [G] 75.2
A:208 [HIS] 0:1944 [G] 2.6 0:1893 [C] 75.2
A:208 [HIS] 0:2012 [U] 4.3 75.2
A:208 [HIS] 0:2630 [G] 3.54 0:2633 [A] base:SC 75.2
A:208 [HIS] 0:2632 [G] 3.43 75.2
A:208 [HIS] 0:2633 [A] 4.36 0:2630 [G] 75.2
A:209 [PRO] 0:1943 [C] 3.61 0:1896 [G] 23.94
A:209 [PRO] 0:1944 [G] 3.17 0:1893 [C] 23.94
A:210 [GLY] 0:1943 [C] 4.61 0:1896 [G] 84.12
A:210 [GLY] 0:2631 [U] 3.54 84.12
A:210 [GLY] 0:2632 [G] 3.24 84.12
A:211 [LYS] 0:1943 [C] 3.05 0:1896 [G] 58.16
A:211 [LYS] 0:2116 [U] 3.45 58.16
A:211 [LYS] 0:2117 [U] 4.44 58.16
A:211 [LYS] 0:2271 [G] 4.9 58.16
A:211 [LYS] 0:2272 [G] 4.88 0:2122 [C] 58.16
A:211 [LYS] 0:2631 [U] 4.86 58.16
A:212 [PRO] 0:1897 [U] 4.76 0:1942 [A] 58.91
A:212 [PRO] 0:1898 [G] 3.31 0:1939 [U] 58.91
A:212 [PRO] 0:1942 [A] 3.84 0:1897 [U] 58.91
A:212 [PRO] 0:1943 [C] 2.97 0:1896 [G] 58.91
A:213 [LYS] 0:1881 [A] 3.69 0:1850 [U] 59.25
A:213 [LYS] 0:1882 [C] 3.65 0:1849 [G] sugar:SC 59.25
A:213 [LYS] 0:1941 [A] 4.86 59.25
A:213 [LYS] 0:1942 [A] 3.11 0:1897 [U] sugar:BB 59.25
A:213 [LYS] 0:1943 [C] 4.09 0:1896 [G] 59.25
A:214 [SER] 0:1898 [G] 2.57 0:1939 [U] base:SC, sugar:BB 74.98
A:214 [SER] 0:1899 [C] 3.21 0:1938 [G] 74.98
A:214 [SER] 0:1942 [A] 4.53 0:1897 [U] 74.98
A:215 [ILE] 0:1898 [G] 4.8 0:1939 [U] 63.05
A:215 [ILE] 0:1899 [C] 3.8 0:1938 [G] 63.05
A:215 [ILE] 0:1900 [A] 4.89 0:1937 [U] 63.05
A:216 [SER] 0:1899 [C] 3.48 0:1938 [G] 81.18
A:216 [SER] 0:1900 [A] 3.95 0:1937 [U] 81.18
A:217 [ARG] 0:1853 [C] 2.52 0:1878 [G] sugar:SC 79.64
A:217 [ARG] 0:1854 [C] 4.41 0:1877 [G] 79.64
A:217 [ARG] 0:1859 [A] 3.39 0:1870 [C] 79.64
A:217 [ARG] 0:1860 [U] 3.0 0:1869 [A] 79.64
A:217 [ARG] 0:1899 [C] 4.44 0:1938 [G] 79.64
A:217 [ARG] 0:1900 [A] 3.32 0:1937 [U] 79.64
A:217 [ARG] 0:2125 [G] 4.19 0:2268 [C] 79.64
A:218 [ASN] 0:2124 [G] 3.42 0:2269 [C] base:BB 52.1
A:218 [ASN] 0:2125 [G] 2.64 0:2268 [C] sugar:SC 52.1
A:218 [ASN] 0:2126 [C] 3.02 0:2267 [G] 52.1
A:218 [ASN] 0:2269 [C] 4.59 0:2124 [G] 52.1
A:220 [PRO] 0:1861 [C] 4.58 0:1868 [G] 70.04
A:220 [PRO] 0:2123 [A] 3.3 0:2270 [G] 70.04
A:220 [PRO] 0:2124 [G] 4.47 0:2269 [C] 70.04
A:220 [PRO] 0:2270 [G] 4.22 0:2123 [A] 70.04
A:220 [PRO] 0:2272 [G] 3.63 0:2122 [C] 70.04
A:221 [PRO] 0:1861 [C] 3.45 0:1868 [G] 72.19
A:221 [PRO] 0:1862 [C] 3.43 0:1867 [G] 72.19
A:221 [PRO] 0:2124 [G] 4.02 0:2269 [C] 72.19
A:221 [PRO] 0:2272 [G] 3.92 0:2122 [C] 72.19
A:222 [GLY] 0:1861 [C] 4.75 0:1868 [G] 92.29
A:222 [GLY] 0:2272 [G] 3.33 0:2122 [C] 92.29
A:223 [ARG] 0:2270 [G] 2.87 0:2123 [A] 66.16
A:223 [ARG] 0:2271 [G] 3.26 66.16
A:223 [ARG] 0:2272 [G] 3.25 0:2122 [C] 66.16
A:224 [LYS] 0:1860 [U] 2.89 0:1869 [A] 94.5
A:224 [LYS] 0:1861 [C] 3.38 0:1868 [G] 94.5
A:224 [LYS] 0:1880 [C] 4.69 0:1851 [G] 94.5
A:225 [VAL] 0:1880 [C] 3.4 0:1851 [G] 91.47
A:225 [VAL] 0:1881 [A] 3.54 0:1850 [U] 91.47
A:226 [GLY] 0:1851 [G] 4.06 0:1880 [C] 93.24
A:226 [GLY] 0:1880 [C] 2.7 0:1851 [G] sugar:BB, sugar:BB 93.24
A:226 [GLY] 0:1881 [A] 3.52 0:1850 [U] 93.24
A:227 [ASP] 0:1851 [G] 2.9 0:1880 [C] base:SC 48.1
A:227 [ASP] 0:1852 [A] 3.57 0:1879 [U] 48.1
A:227 [ASP] 0:1880 [C] 4.78 0:1851 [G] 48.1
A:227 [ASP] 0:1881 [A] 4.29 0:1850 [U] 48.1
A:227 [ASP] 0:1942 [A] 3.65 0:1897 [U] 48.1
A:228 [ILE] 0:1852 [A] 2.82 0:1879 [U] sugar:BB 80.74
A:228 [ILE] 0:1853 [C] 3.16 0:1878 [G] sugar:BB 80.74
A:228 [ILE] 0:1860 [U] 3.91 0:1869 [A] 80.74
A:228 [ILE] 0:1880 [C] 4.02 0:1851 [G] 80.74
A:229 [ALA] 0:1852 [A] 4.48 0:1879 [U] 81.3
A:229 [ALA] 0:1853 [C] 3.82 0:1878 [G] 81.3
A:229 [ALA] 0:1899 [C] 3.2 0:1938 [G] 81.3
A:229 [ALA] 0:1900 [A] 3.41 0:1937 [U] 81.3
A:230 [SER] 0:1852 [A] 3.3 0:1879 [U] 87.23
A:230 [SER] 0:1853 [C] 3.96 0:1878 [G] 87.23
A:230 [SER] 0:1898 [G] 4.56 0:1939 [U] 87.23
A:230 [SER] 0:1899 [C] 2.59 0:1938 [G] sugar:BB 87.23
A:230 [SER] 0:1900 [A] 3.19 0:1937 [U] 87.23
A:230 [SER] 0:1938 [G] 4.72 0:1899 [C] 87.23
A:231 [LYS] 0:1852 [A] 3.82 0:1879 [U] 82.9
A:231 [LYS] 0:1853 [C] 2.67 0:1878 [G] 82.9
A:231 [LYS] 0:1854 [C] 2.89 0:1877 [G] 82.9
A:231 [LYS] 0:1899 [C] 4.64 0:1938 [G] 82.9
A:231 [LYS] 0:1900 [A] 3.84 0:1937 [U] 82.9
A:231 [LYS] 0:1938 [G] 2.9 0:1899 [C] base:BB 82.9
A:232 [ARG] 0:1851 [G] 4.4 0:1880 [C] 83.44
A:232 [ARG] 0:1852 [A] 2.97 0:1879 [U] 83.44
A:232 [ARG] 0:1853 [C] 4.82 0:1878 [G] 83.44
A:232 [ARG] 0:1938 [G] 4.37 0:1899 [C] 83.44
A:232 [ARG] 0:1939 [U] 3.42 0:1898 [G] 83.44
A:232 [ARG] 0:1940 [C] 4.14 83.44
A:233 [THR] 0:1851 [G] 3.53 0:1880 [C] 91.85
A:233 [THR] 0:1852 [A] 4.35 0:1879 [U] 91.85
A:233 [THR] 0:1898 [G] 4.59 0:1939 [U] 91.85
A:233 [THR] 0:1939 [U] 2.77 0:1898 [G] sugar:BB, sugar:BB 91.85
A:233 [THR] 0:1940 [C] 3.15 91.85
A:233 [THR] 0:1942 [A] 2.97 0:1897 [U] sugar:SC 91.85
A:234 [GLY] 0:1851 [G] 3.32 0:1880 [C] sugar:BB 93.14
A:234 [GLY] 0:1852 [A] 4.9 0:1879 [U] 93.14
A:234 [GLY] 0:1939 [U] 4.75 0:1898 [G] 93.14
A:234 [GLY] 0:1940 [C] 3.91 93.14
A:234 [GLY] 0:1941 [A] 3.93 93.14
A:234 [GLY] 0:1942 [A] 2.72 0:1897 [U] 93.14
A:235 [ARG] 0:1850 [U] 3.15 0:1881 [A] 76.73
A:235 [ARG] 0:1851 [G] 3.45 0:1880 [C] 76.73
A:235 [ARG] 0:1940 [C] 4.33 76.73
A:235 [ARG] 0:1941 [A] 3.3 76.73
A:236 [GLY] 0:1939 [U] 3.9 0:1898 [G] 57.36
A:236 [GLY] 0:1940 [C] 3.28 57.36
A:236 [GLY] 0:1941 [A] 3.83 57.36
A:237 [GLY] 0:1938 [G] 4.58 0:1899 [C] 78.62
A:237 [GLY] 0:1939 [U] 3.15 0:1898 [G] 78.62
A:237 [GLY] 0:1940 [C] 4.07 78.62

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group131 1YHQ_A_0 A: 50s ribosomal protein l2p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P20276 Nucleic acid-binding proteins & SH3 Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_A_0 1YHQ_A_0 1.00 1.0 0.19 0.99 Nucleic acid-binding proteins & SH3 Archaeal large subunit ribosomal RNA compare
1JJ2_A_0 1YHQ_A_0 1.00 1.0 0.19 1.0 Nucleic acid-binding proteins & SH3 Archaeal large subunit ribosomal RNA compare
1YHQ_A_0 7OF0_D_A 0.47 0.93 4.33 0.16 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 7O7Y_BA_B5 0.83 0.94 1.26 0.56 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 7RYG_C_A 0.51 0.9 3.92 0.22 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 6AZ3_A_1,2 0.86 0.8 1.08 0.46 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 6YSI_A_1 0.58 0.91 3.28 0.23 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 6S0Z_C_A 0.59 0.93 3.59 0.26 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 4Y4O_1D_1A 0.57 0.93 3.66 0.29 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 6AZ3_A_3 0.68 0.83 1.41 0.0 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 7K00_c_a 0.61 0.9 3.27 0.26 Nucleic acid-binding proteins & SH3 compare