Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_A
|
6AZ3_3
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:21 [HIS] | 3:199 [A] | 3.53 | base:SC | 64.4 | ||
| A:22 [LYS] | 3:198 [C] | 3.42 | 48.5 | |||
| A:22 [LYS] | 3:199 [A] | 3.29 | 48.5 | |||
| A:50 [HIS] | 3:196 [C] | 3.69 | 78.5 | |||
| A:50 [HIS] | 3:197 [G] | 3.38 | 78.5 | |||
| A:50 [HIS] | 3:198 [C] | 4.15 | 78.5 | |||
| A:52 [ALA] | 3:197 [G] | 3.93 | 67.0 | |||
| A:53 [GLY] | 3:196 [C] | 4.68 | 59.2 | |||
| A:54 [ARG] | 3:196 [C] | 4.72 | 79.8 | |||
| A:69 [PHE] | 3:23 [C] | 3.84 | 3:208 [G] | 16.8 | ||
| A:69 [PHE] | 3:24 [C] | 3.23 | 3:207 [G] | 16.8 | ||
| A:69 [PHE] | 3:208 [G] | 4.7 | 3:23 [C] | 16.8 | ||
| A:70 [ARG] | 3:24 [C] | 4.05 | 3:207 [G] | 11.0 | ||
| A:70 [ARG] | 3:25 [A] | 4.0 | 3:206 [U] | 11.0 | ||
| A:71 [ARG] | 3:24 [C] | 4.63 | 3:207 [G] | 19.9 | ||
| A:71 [ARG] | 3:25 [A] | 3.73 | 3:206 [U] | 19.9 | ||
| A:73 [LYS] | 3:25 [A] | 3.88 | 3:206 [U] | 5.9 | ||
| A:73 [LYS] | 3:26 [G] | 4.07 | 3:205 [C] | 5.9 | ||
| A:174 [ARG] | 3:195 [A] | 3.44 | 69.3 | |||
| A:175 [ILE] | 3:195 [A] | 3.39 | 41.8 | |||
| A:176 [GLU] | 3:195 [A] | 4.84 | 52.3 | |||
| A:177 [LYS] | 3:194 [A] | 4.96 | 66.4 | |||
| A:177 [LYS] | 3:195 [A] | 2.75 | base:BB | 66.4 | ||
| A:178 [PRO] | 3:195 [A] | 4.77 | 73.8 | |||
| A:179 [VAL] | 3:195 [A] | 3.77 | 47.2 | |||
| A:184 [ASN] | 3:195 [A] | 4.12 | 48.1 | |||
| A:187 [TYR] | 3:196 [C] | 3.18 | base/AA stacks | 54.8 | ||
| A:188 [ARG] | 3:195 [A] | 3.43 | 20.6 | |||
| A:188 [ARG] | 3:196 [C] | 4.51 | 20.6 | |||
| A:190 [ARG] | 3:196 [C] | 3.15 | base:SC | 58.4 | ||
| A:190 [ARG] | 3:197 [G] | 3.09 | 58.4 | |||
| A:190 [ARG] | 3:198 [C] | 4.99 | 58.4 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group131 | 6AZ3_A_3 | A: Ribosomal protein ul2, Leishmania donovani (natural) 3: rRNA gamma, Leishmania donovani (natural) | Nucleic acid-binding proteins & SH3 | ✔ |
|
Interologs
Total number of interologs for this interface: 9
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6AZ3_A_3 | 7O7Y_BA_B5 | 0.84 | 0.96 | 0.46 | 0.36 | Nucleic acid-binding proteins & SH3 | compare | |
| 1YHQ_A_0 | 6AZ3_A_3 | 0.68 | 0.83 | 1.41 | 0.0 | Nucleic acid-binding proteins & SH3 | compare | |
| 1JJ2_A_0 | 6AZ3_A_3 | 0.67 | 0.83 | 1.43 | 0.0 | Nucleic acid-binding proteins & SH3 | compare | |
| 1VQ8_A_0 | 6AZ3_A_3 | 0.68 | 0.83 | 1.45 | 0.0 | Nucleic acid-binding proteins & SH3 | compare | |
| 6AZ3_A_3 | 7RYG_C_A | 0.42 | 0.69 | 3.02 | 0.1 | Nucleic acid-binding proteins & SH3 | compare | |
| 6AZ3_A_3 | 6YSI_A_1 | 0.31 | 0.54 | 3.47 | 0.05 | Nucleic acid-binding proteins & SH3 | compare | |
| 6AZ3_A_3 | 6S0Z_C_A | 0.39 | 0.72 | 3.6 | 0.09 | Nucleic acid-binding proteins & SH3 | compare | |
| 6AZ3_A_3 | 7K00_c_a | 0.44 | 0.7 | 3.69 | 0.1 | Nucleic acid-binding proteins & SH3 | compare | |
| 4Y4O_1D_1A | 6AZ3_A_3 | 0.47 | 0.68 | 3.83 | 0.1 | Nucleic acid-binding proteins & SH3 | compare |