RNAprotDB

All interfaces > All interologs > Interface groups > group131 > 6AZ3_A_3 vs 6YSI_A_1

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6AZ3_A
6AZ3_3
6YSI_A
6YSI_1
Conserved?
A:22 [LYS] 3:198 [C] A:60 [GLN] 1:1558 [G] ✔
A:22 [LYS] 3:199 [A] A:60 [GLN] 1:1559 [G] ✔
A:190 [ARG] 3:197 [G] A:213 [TRP] 1:1557 [A] ✔
A:21 [HIS] 3:199 [A] A:59 [LYS] 1:1559 [G] ✔
A:50 [HIS] 3:196 [C] A:83 [TYR] 1:1556 [C] ✔
A:50 [HIS] 3:197 [G] A:83 [TYR] 1:1557 [A] ✔
A:50 [HIS] 3:198 [C] A:83 [TYR] 1:1558 [G] ✔
A:54 [ARG] 3:196 [C] A:87 [ARG] 1:1556 [C] ❌ 6YSI_A_1
A:52 [ALA] 3:197 [G] A:85 [PRO] 1:1557 [A] ❌ 6YSI_A_1
A:187 [TYR] 3:196 [C] A:210 [ALA] 1:1556 [C] ❌ 6YSI_A_1
A:53 [GLY] 3:196 [C] A:86 [SER] 1:1556 [C] ❌ 6YSI_A_1
A:188 [ARG] 3:196 [C] A:211 [ALA] 1:1556 [C] ❌ 6YSI_A_1
A:71 [ARG] 3:25 [A] A:100 [GLU] 1:1412 [A] ❌ 6YSI_A_1
A:70 [ARG] 3:25 [A] A:99 [GLY] 1:1412 [A] ❌ 6YSI_A_1
A:190 [ARG] 3:196 [C] A:213 [TRP] 1:1556 [C] ❌ 6YSI_A_1
A:190 [ARG] 3:198 [C] A:213 [TRP] 1:1558 [G] ❌ 6YSI_A_1
A:178 [PRO] 3:197 [G] A:203 [ARG] 1:1557 [A] ❌ 6AZ3_A_3
A:21 [HIS] 3:198 [C] A:59 [LYS] 1:1558 [G] ❌ 6AZ3_A_3
A:22 [LYS] 3:197 [G] A:60 [GLN] 1:1557 [A] ❌ 6AZ3_A_3
A:52 [ALA] 3:199 [A] A:85 [PRO] 1:1559 [G] ❌ 6AZ3_A_3
A:52 [ALA] 3:198 [C] A:85 [PRO] 1:1558 [G] ❌ 6AZ3_A_3
A:71 [ARG] 3:24 [C] A:100 [GLU] 1:1411 [G] ❌ 6YSI_1:1411 no longer at interface
A:70 [ARG] 3:24 [C] A:99 [GLY] 1:1411 [G] ❌ 6YSI_1:1411 no longer at interface
A:20 [GLY] 3:31 [C] A:58 [HIS] 1:1417 [G] ❌ 6AZ3_A:20, 6AZ3_3:31 no longer at interface
A:21 [HIS] 3:200 [A] A:59 [LYS] 1:1560 [A] ❌ 6AZ3_3:200 no longer at interface
A:23 [ARG] 3:201 [A] A:61 [HIS] 1:1561 [A] ❌ 6AZ3_A:23, 6AZ3_3:201 no longer at interface
A:23 [ARG] 3:200 [A] A:61 [HIS] 1:1560 [A] ❌ 6AZ3_A:23, 6AZ3_3:200 no longer at interface
A:191 [GLY] 3:197 [G] A:214 [ARG] 1:1557 [A] ❌ 6AZ3_A:191 no longer at interface
A:20 [GLY] 3:199 [A] A:58 [HIS] 1:1559 [G] ❌ 6AZ3_A:20 no longer at interface
A:20 [GLY] 3:198 [C] A:58 [HIS] 1:1558 [G] ❌ 6AZ3_A:20 no longer at interface
A:20 [GLY] 3:197 [G] A:58 [HIS] 1:1557 [A] ❌ 6AZ3_A:20 no longer at interface
A:23 [ARG] 3:199 [A] A:61 [HIS] 1:1559 [G] ❌ 6AZ3_A:23 no longer at interface
A:25 [GLY] 3:199 [A] A:63 [ARG] 1:1559 [G] ❌ 6AZ3_A:25 no longer at interface
A:25 [GLY] 3:198 [C] A:63 [ARG] 1:1558 [G] ❌ 6AZ3_A:25 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Nucleic acid-binding proteins & SH3 0.54 3.47 0.05 0.73 0.46 0.75 0.45 0.31 0.10 0.08 0.48


Other pairs involving 6AZ3_A_3 or 6YSI_A_1

Total number of entries: 19

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6YSI_A_1 7RYG_C_A 0.96 0.98 1.27 0.98 Nucleic acid-binding proteins & SH3 Bacterial large subunit ribosomal RNA compare
6YSI_A_1 7O7Y_BA_B5 0.60 0.89 3.76 0.21 Nucleic acid-binding proteins & SH3 compare
6YSI_A_1 7K00_c_a 0.94 1.0 0.5 0.76 Nucleic acid-binding proteins & SH3 Bacterial large subunit ribosomal RNA compare
6YSI_A_1 7OF0_D_A 0.68 0.92 2.67 0.31 Nucleic acid-binding proteins & SH3 Bacterial large subunit ribosomal RNA compare
6S0Z_C_A 6YSI_A_1 0.86 0.98 0.99 0.57 Nucleic acid-binding proteins & SH3 Bacterial large subunit ribosomal RNA compare
1VQ8_A_0 6YSI_A_1 0.59 0.91 3.39 0.23 Nucleic acid-binding proteins & SH3 compare
1VQ8_A_0 6AZ3_A_3 0.68 0.83 1.45 0.0 Nucleic acid-binding proteins & SH3 compare
1JJ2_A_0 6AZ3_A_3 0.67 0.83 1.43 0.0 Nucleic acid-binding proteins & SH3 compare
1JJ2_A_0 6YSI_A_1 0.59 0.91 3.41 0.23 Nucleic acid-binding proteins & SH3 compare
6AZ3_A_1,2 6YSI_A_1 0.62 0.76 3.84 0.22 Nucleic acid-binding proteins & SH3 compare
4Y4O_1D_1A 6YSI_A_1 0.86 0.97 1.15 0.57 Nucleic acid-binding proteins & SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1D_1A 6AZ3_A_3 0.47 0.68 3.83 0.1 Nucleic acid-binding proteins & SH3 compare
6AZ3_A_3 7O7Y_BA_B5 0.84 0.96 0.46 0.36 Nucleic acid-binding proteins & SH3 compare
6AZ3_A_3 6S0Z_C_A 0.39 0.72 3.6 0.09 Nucleic acid-binding proteins & SH3 compare
6AZ3_A_3 7RYG_C_A 0.42 0.69 3.02 0.1 Nucleic acid-binding proteins & SH3 compare
6AZ3_A_3 7K00_c_a 0.44 0.7 3.69 0.1 Nucleic acid-binding proteins & SH3 compare
6AZ3_A_3 6YSI_A_1 0.31 0.54 3.47 0.05 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 6YSI_A_1 0.58 0.91 3.28 0.23 Nucleic acid-binding proteins & SH3 compare
1YHQ_A_0 6AZ3_A_3 0.68 0.83 1.41 0.0 Nucleic acid-binding proteins & SH3 compare