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All interfaces > All interologs > Interface groups > group132 > 1JJ2_J_0

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1JJ2_J
1JJ2_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
J:1 [MET] 0:2686 [C] 2.62 0:2708 [G] base:BB, sugar:BB 67.17
J:1 [MET] 0:2687 [G] 3.05 0:2707 [C] 67.17
J:1 [MET] 0:2708 [G] 2.6 0:2686 [C] base:BB 67.17
J:1 [MET] 0:2709 [G] 4.38 0:2685 [C] 67.17
J:2 [GLU] 0:2687 [G] 3.69 0:2707 [C] 45.01
J:2 [GLU] 0:2688 [U] 4.29 0:2706 [A] 45.01
J:2 [GLU] 0:2708 [G] 4.63 0:2686 [C] 45.01
J:2 [GLU] 0:2709 [G] 4.57 0:2685 [C] 45.01
J:3 [ALA] 0:2708 [G] 3.42 0:2686 [C] 34.75
J:3 [ALA] 0:2709 [G] 3.35 0:2685 [C] 34.75
J:4 [LEU] 0:2709 [G] 4.88 0:2685 [C] 1.65
J:7 [ASP] 0:2710 [U] 4.2 0:2684 [A] 17.73
J:7 [ASP] 0:2764 [C] 3.66 0:2716 [G] 17.73
J:8 [VAL] 0:2763 [G] 4.38 0:2717 [C] 50.01
J:9 [THR] 0:2762 [C] 3.58 70.06
J:9 [THR] 0:2763 [G] 2.64 0:2717 [C] 70.06
J:10 [GLN] 0:2710 [U] 4.85 0:2684 [A] 42.22
J:10 [GLN] 0:2711 [U] 2.98 0:2683 [G] 42.22
J:11 [GLY] 0:1743 [G] 2.55 0:2036 [C] sugar:BB 75.79
J:11 [GLY] 0:1744 [G] 3.22 0:2035 [C] sugar:BB 75.79
J:12 [LEU] 0:1743 [G] 4.51 0:2036 [C] 76.22
J:12 [LEU] 0:1744 [G] 4.27 0:2035 [C] 76.22
J:13 [GLU] 0:1743 [G] 4.13 0:2036 [C] 38.2
J:13 [GLU] 0:1744 [G] 3.15 0:2035 [C] base:SC 38.2
J:13 [GLU] 0:1747 [A] 3.55 0:2034 [U] 38.2
J:13 [GLU] 0:2036 [C] 2.82 0:1743 [G] 38.2
J:14 [LYS] 0:1747 [A] 4.6 0:2034 [U] 31.03
J:14 [LYS] 0:1993 [C] 4.43 31.03
J:14 [LYS] 0:2583 [A] 3.62 0:2595 [U] 31.03
J:14 [LYS] 0:2584 [G] 4.37 0:2594 [C] 31.03
J:14 [LYS] 0:2596 [A] 3.67 0:2582 [G] 31.03
J:15 [GLY] 0:1745 [G] 4.64 37.39
J:15 [GLY] 0:1746 [A] 4.75 0:2032 [U] 37.39
J:16 [SER] 0:1744 [G] 2.59 0:2035 [C] sugar:SC 78.85
J:16 [SER] 0:1745 [G] 3.49 78.85
J:17 [LEU] 0:1744 [G] 4.51 0:2035 [C] 0.0
J:17 [LEU] 0:1745 [G] 2.89 0.0
J:30 [LYS] 0:1992 [U] 3.23 35.37
J:30 [LYS] 0:1993 [C] 2.75 35.37
J:32 [ILE] 0:1993 [C] 3.39 88.26
J:32 [ILE] 0:2596 [A] 3.33 0:2582 [G] 88.26
J:33 [SER] 0:2596 [A] 2.54 0:2582 [G] sugar:SC 46.49
J:33 [SER] 0:2597 [U] 3.21 0:2601 [A] 46.49
J:34 [VAL] 0:2597 [U] 2.78 0:2601 [A] sugar:BB 72.12
J:34 [VAL] 0:2598 [U] 4.76 72.12
J:35 [HIS] 0:2597 [U] 3.92 0:2601 [A] 1.75
J:35 [HIS] 0:2598 [U] 3.38 1.75
J:36 [GLY] 0:2597 [U] 3.73 0:2601 [A] 45.82
J:36 [GLY] 0:2598 [U] 2.6 45.82
J:36 [GLY] 0:2599 [A] 4.7 45.82
J:37 [TYR] 0:2597 [U] 3.98 0:2601 [A] sugar:BB 2.6
J:37 [TYR] 0:2598 [U] 3.69 2.6
J:37 [TYR] 0:2601 [A] 3.52 0:2597 [U] base:BB 2.6
J:37 [TYR] 0:2711 [U] 3.44 0:2683 [G] 2.6
J:37 [TYR] 0:2712 [G] 2.99 0:2682 [C] 2.6
J:38 [SER] 0:2598 [U] 4.39 54.1
J:38 [SER] 0:2599 [A] 4.94 54.1
J:38 [SER] 0:2600 [A] 3.85 base:SC 54.1
J:38 [SER] 0:2601 [A] 3.3 0:2597 [U] 54.1
J:38 [SER] 0:2711 [U] 2.75 0:2683 [G] sugar:BB 54.1
J:38 [SER] 0:2712 [G] 3.79 0:2682 [C] 54.1
J:39 [GLY] 0:2581 [U] 4.94 55.85
J:39 [GLY] 0:2582 [G] 3.59 0:2596 [A] 55.85
J:39 [GLY] 0:2601 [A] 4.87 0:2597 [U] 55.85
J:39 [GLY] 0:2711 [U] 4.91 0:2683 [G] 55.85
J:39 [GLY] 0:2712 [G] 3.21 0:2682 [C] 55.85
J:40 [THR] 0:2037 [C] 4.32 0:1742 [A] 49.81
J:40 [THR] 0:2581 [U] 4.59 49.81
J:40 [THR] 0:2582 [G] 3.07 0:2596 [A] 49.81
J:40 [THR] 0:2583 [A] 3.95 0:2595 [U] 49.81
J:40 [THR] 0:2712 [G] 3.65 0:2682 [C] 49.81
J:40 [THR] 0:2713 [G] 3.83 0:2767 [C] 49.81
J:41 [LYS] 0:2037 [C] 4.94 0:1742 [A] 52.72
J:41 [LYS] 0:2545 [U] 4.81 0:2613 [G] 52.72
J:41 [LYS] 0:2546 [U] 2.57 0:2610 [U] 52.72
J:41 [LYS] 0:2547 [C] 4.77 0:2609 [G] 52.72
J:41 [LYS] 0:2582 [G] 3.27 0:2596 [A] 52.72
J:41 [LYS] 0:2583 [A] 3.53 0:2595 [U] 52.72
J:42 [ASN] 0:2035 [C] 4.83 0:1744 [G] 68.25
J:42 [ASN] 0:2036 [C] 3.12 0:1743 [G] 68.25
J:42 [ASN] 0:2546 [U] 3.1 0:2610 [U] 68.25
J:42 [ASN] 0:2582 [G] 4.02 0:2596 [A] 68.25
J:42 [ASN] 0:2583 [A] 2.82 0:2595 [U] 68.25
J:42 [ASN] 0:2584 [G] 4.73 0:2594 [C] 68.25
J:43 [ARG] 0:2036 [C] 3.33 0:1743 [G] 76.23
J:43 [ARG] 0:2037 [C] 2.82 0:1742 [A] 76.23
J:43 [ARG] 0:2582 [G] 4.98 0:2596 [A] 76.23
J:43 [ARG] 0:2583 [A] 3.31 0:2595 [U] 76.23
J:43 [ARG] 0:2711 [U] 4.9 0:2683 [G] 76.23
J:43 [ARG] 0:2712 [G] 2.72 0:2682 [C] 76.23
J:43 [ARG] 0:2713 [G] 3.66 0:2767 [C] 76.23
J:44 [HIS] 0:1744 [G] 3.76 0:2035 [C] 3.53
J:44 [HIS] 0:1747 [A] 3.36 0:2034 [U] base/AA stacks 3.53
J:44 [HIS] 0:2035 [C] 2.94 0:1744 [G] sugar:SC 3.53
J:44 [HIS] 0:2036 [C] 2.91 0:1743 [G] sugar:BB 3.53
J:44 [HIS] 0:2583 [A] 4.59 0:2595 [U] 3.53
J:44 [HIS] 0:2584 [G] 3.99 0:2594 [C] 3.53
J:45 [PRO] 0:2583 [A] 3.19 0:2595 [U] 73.81
J:46 [LYS] 0:2711 [U] 4.84 0:2683 [G] 47.01
J:46 [LYS] 0:2712 [G] 3.87 0:2682 [C] 47.01
J:54 [THR] 0:2596 [A] 3.71 0:2582 [G] 28.5
J:54 [THR] 0:2597 [U] 2.95 0:2601 [A] 28.5
J:56 [SER] 0:1993 [C] 2.79 74.69
J:57 [VAL] 0:1993 [C] 4.98 88.11
J:58 [THR] 0:1993 [C] 4.73 58.33
J:66 [ARG] 0:1992 [U] 3.21 base/AA stacks 52.7
J:66 [ARG] 0:1993 [C] 2.7 52.7
J:66 [ARG] 0:1994 [A] 2.77 52.7
J:68 [VAL] 0:1993 [C] 3.71 69.45
J:68 [VAL] 0:2596 [A] 4.64 0:2582 [G] 69.45
J:70 [GLU] 0:2597 [U] 4.64 0:2601 [A] 11.7
J:77 [ARG] 0:1743 [G] 3.94 0:2036 [C] 63.62
J:77 [ARG] 0:1744 [G] 3.11 0:2035 [C] 63.62
J:78 [LYS] 0:1742 [A] 2.99 0:2037 [C] base:SC, sugar:SC 50.93
J:78 [LYS] 0:1743 [G] 3.27 0:2036 [C] 50.93
J:78 [LYS] 0:2722 [G] 4.21 0:2760 [C] 50.93
J:78 [LYS] 0:2762 [C] 2.96 50.93
J:79 [PRO] 0:2721 [U] 4.21 0:2761 [A] 46.1
J:81 [ARG] 0:2720 [C] 4.67 0:2718 [C] 65.43
J:81 [ARG] 0:2763 [G] 4.56 0:2717 [C] 65.43
J:81 [ARG] 0:2764 [C] 2.96 0:2716 [G] 65.43
J:81 [ARG] 0:2765 [C] 4.23 0:2715 [G] 65.43
J:85 [GLY] 0:2720 [C] 3.53 0:2718 [C] sugar:BB 96.92
J:87 [ARG] 0:2720 [C] 2.48 0:2718 [C] base:SC 11.02
J:87 [ARG] 0:2721 [U] 2.78 0:2761 [A] sugar:SC 11.02
J:87 [ARG] 0:2763 [G] 2.92 0:2717 [C] sugar:SC 11.02
J:87 [ARG] 0:2764 [C] 3.89 0:2716 [G] 11.02
J:93 [ASN] 0:1743 [G] 4.44 0:2036 [C] 98.87
J:93 [ASN] 0:1744 [G] 2.85 0:2035 [C] 98.87
J:120 [ARG] 0:2709 [G] 4.33 0:2685 [C] 44.49

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group132 1JJ2_J_0 J: Ribosomal protein l14, Haloarcula marismortui (natural) 0: 23s rRNA, Haloarcula marismortui (natural) P22450 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_J_0 1VQ8_K_0 0.99 1.0 0.25 0.97 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1JJ2_J_0 1YHQ_K_0 0.99 1.0 0.16 0.97 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1JJ2_J_0 3CC2_K_0 0.99 1.0 0.1 1.0 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1JJ2_J_0 4Y4O_1O_1A 0.53 0.93 2.26 0.26 Ribosomal protein L14-related compare
1JJ2_J_0 7K00_j_a 0.55 0.91 2.09 0.26 Ribosomal protein L14-related compare
1JJ2_J_0 7OF0_L_A 0.53 0.95 2.54 0.12 Ribosomal protein L14-related compare
1JJ2_J_0 7RYG_J_A 0.60 0.92 2.21 0.27 Ribosomal protein L14-related compare
1JJ2_J_0 6AZ3_J_2 0.88 0.83 1.04 0.5 Ribosomal protein L14-related compare
1JJ2_J_0 7O7Y_BV_B5 0.73 0.94 1.74 0.39 Ribosomal protein L14-related compare
1JJ2_J_0 6S0Z_I_A 0.60 0.93 2.3 0.31 Ribosomal protein L14-related compare
1JJ2_J_0 6AZ3_J_4 0.52 0.88 2.37 0.24 Ribosomal protein L14-related compare