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All interfaces > All interologs > Interface groups > group132 > 1JJ2_J_0 vs 1VQ8_K_0

Interface analysis


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Licorice
Surface

RNA

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Licorice
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Common contacts -

1JJ2_J
1JJ2_0
1VQ8_K
1VQ8_0
Conserved?
J:68 [VAL] 0:1993 [C] K:68 [VAL] 0:1993 [C] ✔
J:68 [VAL] 0:2596 [A] K:68 [VAL] 0:2596 [A] ✔
J:66 [ARG] 0:1992 [U] K:66 [ARG] 0:1992 [U] ✔
J:66 [ARG] 0:1993 [C] K:66 [ARG] 0:1993 [C] ✔
J:66 [ARG] 0:1994 [A] K:66 [ARG] 0:1994 [A] ✔
J:10 [GLN] 0:2710 [U] K:10 [GLN] 0:2710 [U] ✔
J:10 [GLN] 0:2711 [U] K:10 [GLN] 0:2711 [U] ✔
J:77 [ARG] 0:1743 [G] K:77 [ARG] 0:1743 [G] ✔
J:77 [ARG] 0:1744 [G] K:77 [ARG] 0:1744 [G] ✔
J:79 [PRO] 0:2721 [U] K:79 [PRO] 0:2721 [U] ✔
J:37 [TYR] 0:2597 [U] K:37 [TYR] 0:2597 [U] ✔
J:37 [TYR] 0:2598 [U] K:37 [TYR] 0:2598 [U] ✔
J:37 [TYR] 0:2601 [A] K:37 [TYR] 0:2601 [A] ✔
J:37 [TYR] 0:2711 [U] K:37 [TYR] 0:2711 [U] ✔
J:37 [TYR] 0:2712 [G] K:37 [TYR] 0:2712 [G] ✔
J:85 [GLY] 0:2720 [C] K:85 [GLY] 0:2720 [C] ✔
J:17 [LEU] 0:1744 [G] K:17 [LEU] 0:1744 [G] ✔
J:17 [LEU] 0:1745 [G] K:17 [LEU] 0:1745 [G] ✔
J:8 [VAL] 0:2763 [G] K:8 [VAL] 0:2763 [G] ✔
J:45 [PRO] 0:2583 [A] K:45 [PRO] 0:2583 [A] ✔
J:3 [ALA] 0:2708 [G] K:3 [ALA] 0:2708 [G] ✔
J:3 [ALA] 0:2709 [G] K:3 [ALA] 0:2709 [G] ✔
J:11 [GLY] 0:1743 [G] K:11 [GLY] 0:1743 [G] ✔
J:11 [GLY] 0:1744 [G] K:11 [GLY] 0:1744 [G] ✔
J:81 [ARG] 0:2720 [C] K:81 [ARG] 0:2720 [C] ✔
J:81 [ARG] 0:2763 [G] K:81 [ARG] 0:2763 [G] ✔
J:81 [ARG] 0:2764 [C] K:81 [ARG] 0:2764 [C] ✔
J:81 [ARG] 0:2765 [C] K:81 [ARG] 0:2765 [C] ✔
J:40 [THR] 0:2037 [C] K:40 [THR] 0:2037 [C] ✔
J:40 [THR] 0:2581 [U] K:40 [THR] 0:2581 [U] ✔
J:40 [THR] 0:2582 [G] K:40 [THR] 0:2582 [G] ✔
J:40 [THR] 0:2583 [A] K:40 [THR] 0:2583 [A] ✔
J:40 [THR] 0:2712 [G] K:40 [THR] 0:2712 [G] ✔
J:40 [THR] 0:2713 [G] K:40 [THR] 0:2713 [G] ✔
J:13 [GLU] 0:1743 [G] K:13 [GLU] 0:1743 [G] ✔
J:13 [GLU] 0:1744 [G] K:13 [GLU] 0:1744 [G] ✔
J:13 [GLU] 0:1747 [A] K:13 [GLU] 0:1747 [A] ✔
J:13 [GLU] 0:2036 [C] K:13 [GLU] 0:2036 [C] ✔
J:2 [GLU] 0:2687 [G] K:2 [GLU] 0:2687 [G] ✔
J:2 [GLU] 0:2708 [G] K:2 [GLU] 0:2708 [G] ✔
J:2 [GLU] 0:2709 [G] K:2 [GLU] 0:2709 [G] ✔
J:87 [ARG] 0:2720 [C] K:87 [ARG] 0:2720 [C] ✔
J:87 [ARG] 0:2721 [U] K:87 [ARG] 0:2721 [U] ✔
J:87 [ARG] 0:2763 [G] K:87 [ARG] 0:2763 [G] ✔
J:87 [ARG] 0:2764 [C] K:87 [ARG] 0:2764 [C] ✔
J:7 [ASP] 0:2710 [U] K:7 [ASP] 0:2710 [U] ✔
J:7 [ASP] 0:2764 [C] K:7 [ASP] 0:2764 [C] ✔
J:14 [LYS] 0:1747 [A] K:14 [LYS] 0:1747 [A] ✔
J:14 [LYS] 0:1993 [C] K:14 [LYS] 0:1993 [C] ✔
J:14 [LYS] 0:2583 [A] K:14 [LYS] 0:2583 [A] ✔
J:14 [LYS] 0:2584 [G] K:14 [LYS] 0:2584 [G] ✔
J:14 [LYS] 0:2596 [A] K:14 [LYS] 0:2596 [A] ✔
J:32 [ILE] 0:1993 [C] K:32 [ILE] 0:1993 [C] ✔
J:32 [ILE] 0:2596 [A] K:32 [ILE] 0:2596 [A] ✔
J:35 [HIS] 0:2597 [U] K:35 [HIS] 0:2597 [U] ✔
J:35 [HIS] 0:2598 [U] K:35 [HIS] 0:2598 [U] ✔
J:78 [LYS] 0:1742 [A] K:78 [LYS] 0:1742 [A] ✔
J:78 [LYS] 0:1743 [G] K:78 [LYS] 0:1743 [G] ✔
J:78 [LYS] 0:2722 [G] K:78 [LYS] 0:2722 [G] ✔
J:78 [LYS] 0:2762 [C] K:78 [LYS] 0:2762 [C] ✔
J:36 [GLY] 0:2597 [U] K:36 [GLY] 0:2597 [U] ✔
J:36 [GLY] 0:2598 [U] K:36 [GLY] 0:2598 [U] ✔
J:36 [GLY] 0:2599 [A] K:36 [GLY] 0:2599 [A] ✔
J:30 [LYS] 0:1992 [U] K:30 [LYS] 0:1992 [U] ✔
J:30 [LYS] 0:1993 [C] K:30 [LYS] 0:1993 [C] ✔
J:39 [GLY] 0:2581 [U] K:39 [GLY] 0:2581 [U] ✔
J:39 [GLY] 0:2582 [G] K:39 [GLY] 0:2582 [G] ✔
J:39 [GLY] 0:2601 [A] K:39 [GLY] 0:2601 [A] ✔
J:39 [GLY] 0:2711 [U] K:39 [GLY] 0:2711 [U] ✔
J:39 [GLY] 0:2712 [G] K:39 [GLY] 0:2712 [G] ✔
J:15 [GLY] 0:1745 [G] K:15 [GLY] 0:1745 [G] ✔
J:15 [GLY] 0:1746 [A] K:15 [GLY] 0:1746 [A] ✔
J:1 [MET] 0:2686 [C] K:1 [MET] 0:2686 [C] ✔
J:1 [MET] 0:2687 [G] K:1 [MET] 0:2687 [G] ✔
J:1 [MET] 0:2708 [G] K:1 [MET] 0:2708 [G] ✔
J:1 [MET] 0:2709 [G] K:1 [MET] 0:2709 [G] ✔
J:33 [SER] 0:2596 [A] K:33 [SER] 0:2596 [A] ✔
J:33 [SER] 0:2597 [U] K:33 [SER] 0:2597 [U] ✔
J:93 [ASN] 0:1743 [G] K:93 [ASN] 0:1743 [G] ✔
J:93 [ASN] 0:1744 [G] K:93 [ASN] 0:1744 [G] ✔
J:38 [SER] 0:2598 [U] K:38 [SER] 0:2598 [U] ✔
J:38 [SER] 0:2600 [A] K:38 [SER] 0:2600 [A] ✔
J:38 [SER] 0:2601 [A] K:38 [SER] 0:2601 [A] ✔
J:38 [SER] 0:2711 [U] K:38 [SER] 0:2711 [U] ✔
J:38 [SER] 0:2712 [G] K:38 [SER] 0:2712 [G] ✔
J:46 [LYS] 0:2711 [U] K:46 [LYS] 0:2711 [U] ✔
J:46 [LYS] 0:2712 [G] K:46 [LYS] 0:2712 [G] ✔
J:12 [LEU] 0:1743 [G] K:12 [LEU] 0:1743 [G] ✔
J:12 [LEU] 0:1744 [G] K:12 [LEU] 0:1744 [G] ✔
J:16 [SER] 0:1744 [G] K:16 [SER] 0:1744 [G] ✔
J:16 [SER] 0:1745 [G] K:16 [SER] 0:1745 [G] ✔
J:4 [LEU] 0:2709 [G] K:4 [LEU] 0:2709 [G] ✔
J:58 [THR] 0:1993 [C] K:58 [THR] 0:1993 [C] ✔
J:56 [SER] 0:1993 [C] K:56 [SER] 0:1993 [C] ✔
J:44 [HIS] 0:1744 [G] K:44 [LEU] 0:1744 [G] ✔
J:44 [HIS] 0:1747 [A] K:44 [LEU] 0:1747 [A] ✔
J:44 [HIS] 0:2035 [C] K:44 [LEU] 0:2035 [C] ✔
J:44 [HIS] 0:2036 [C] K:44 [LEU] 0:2036 [C] ✔
J:44 [HIS] 0:2583 [A] K:44 [LEU] 0:2583 [A] ✔
J:44 [HIS] 0:2584 [G] K:44 [LEU] 0:2584 [G] ✔
J:42 [ASN] 0:2036 [C] K:42 [ASN] 0:2036 [C] ✔
J:42 [ASN] 0:2546 [U] K:42 [ASN] 0:2546 [U] ✔
J:42 [ASN] 0:2582 [G] K:42 [ASN] 0:2582 [G] ✔
J:42 [ASN] 0:2583 [A] K:42 [ASN] 0:2583 [A] ✔
J:42 [ASN] 0:2584 [G] K:42 [ASN] 0:2584 [G] ✔
J:41 [LYS] 0:2037 [C] K:41 [LYS] 0:2037 [C] ✔
J:41 [LYS] 0:2546 [U] K:41 [LYS] 0:2546 [U] ✔
J:41 [LYS] 0:2547 [C] K:41 [LYS] 0:2547 [C] ✔
J:41 [LYS] 0:2582 [G] K:41 [LYS] 0:2582 [G] ✔
J:41 [LYS] 0:2583 [A] K:41 [LYS] 0:2583 [A] ✔
J:34 [VAL] 0:2597 [U] K:34 [VAL] 0:2597 [U] ✔
J:34 [VAL] 0:2598 [U] K:34 [VAL] 0:2598 [U] ✔
J:54 [THR] 0:2596 [A] K:54 [THR] 0:2596 [A] ✔
J:54 [THR] 0:2597 [U] K:54 [THR] 0:2597 [U] ✔
J:9 [THR] 0:2762 [C] K:9 [THR] 0:2762 [C] ✔
J:9 [THR] 0:2763 [G] K:9 [THR] 0:2763 [G] ✔
J:43 [ARG] 0:2036 [C] K:43 [ARG] 0:2036 [C] ✔
J:43 [ARG] 0:2037 [C] K:43 [ARG] 0:2037 [C] ✔
J:43 [ARG] 0:2582 [G] K:43 [ARG] 0:2582 [G] ✔
J:43 [ARG] 0:2583 [A] K:43 [ARG] 0:2583 [A] ✔
J:43 [ARG] 0:2711 [U] K:43 [ARG] 0:2711 [U] ✔
J:43 [ARG] 0:2712 [G] K:43 [ARG] 0:2712 [G] ✔
J:43 [ARG] 0:2713 [G] K:43 [ARG] 0:2713 [G] ✔
J:38 [SER] 0:2599 [A] K:38 [SER] 0:2599 [A] ❌ 1VQ8_K_0
J:42 [ASN] 0:2035 [C] K:42 [ASN] 0:2035 [C] ❌ 1VQ8_K_0
J:2 [GLU] 0:2688 [U] K:2 [GLU] 0:2688 [U] ❌ 1VQ8_0:2688 no longer at interface
J:41 [LYS] 0:2545 [U] K:41 [LYS] 0:2545 [U] ❌ 1VQ8_0:2545 no longer at interface
J:36 [GLY] 0:2685 [C] K:36 [GLY] 0:2685 [C] ❌ 1JJ2_0:2685 no longer at interface
J:70 [GLU] 0:2597 [U] K:70 [GLU] 0:2597 [U] ❌ 1VQ8_K:70 no longer at interface
J:120 [ARG] 0:2709 [G] K:120 [ARG] 0:2709 [G] ❌ 1VQ8_K:120 no longer at interface
J:57 [VAL] 0:1993 [C] K:57 [VAL] 0:1993 [C] ❌ 1VQ8_K:57 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L14-related Archaeal large subunit ribosomal RNA 1.0 0.25 0.97 0.99 1.0 1.0 0.97 0.99 0.98 0.83 0.75


Other pairs involving 1JJ2_J_0 or 1VQ8_K_0

Total number of entries: 21

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_K_0 1YHQ_K_0 0.99 1.0 0.18 0.97 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1VQ8_K_0 6AZ3_J_2 0.86 0.83 1.08 0.5 Ribosomal protein L14-related compare
1VQ8_K_0 4Y4O_1O_1A 0.55 0.93 2.28 0.24 Ribosomal protein L14-related compare
1VQ8_K_0 7K00_j_a 0.61 0.91 2.13 0.26 Ribosomal protein L14-related compare
1VQ8_K_0 7RYG_J_A 0.60 0.92 2.17 0.24 Ribosomal protein L14-related compare
1VQ8_K_0 6AZ3_J_4 0.53 0.88 2.31 0.24 Ribosomal protein L14-related compare
1VQ8_K_0 7OF0_L_A 0.52 0.95 2.51 0.12 Ribosomal protein L14-related compare
1VQ8_K_0 7O7Y_BV_B5 0.72 0.94 1.78 0.44 Ribosomal protein L14-related compare
1VQ8_K_0 3CC2_K_0 0.99 1.0 0.24 0.97 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1VQ8_K_0 6S0Z_I_A 0.62 0.93 2.29 0.28 Ribosomal protein L14-related compare
1JJ2_J_0 1VQ8_K_0 0.99 1.0 0.25 0.97 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1JJ2_J_0 1YHQ_K_0 0.99 1.0 0.16 0.97 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1JJ2_J_0 3CC2_K_0 0.99 1.0 0.1 1.0 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1JJ2_J_0 4Y4O_1O_1A 0.53 0.93 2.26 0.26 Ribosomal protein L14-related compare
1JJ2_J_0 7K00_j_a 0.55 0.91 2.09 0.26 Ribosomal protein L14-related compare
1JJ2_J_0 7OF0_L_A 0.53 0.95 2.54 0.12 Ribosomal protein L14-related compare
1JJ2_J_0 7RYG_J_A 0.60 0.92 2.21 0.27 Ribosomal protein L14-related compare
1JJ2_J_0 6AZ3_J_2 0.88 0.83 1.04 0.5 Ribosomal protein L14-related compare
1JJ2_J_0 7O7Y_BV_B5 0.73 0.94 1.74 0.39 Ribosomal protein L14-related compare
1JJ2_J_0 6S0Z_I_A 0.60 0.93 2.3 0.31 Ribosomal protein L14-related compare
1JJ2_J_0 6AZ3_J_4 0.52 0.88 2.37 0.24 Ribosomal protein L14-related compare