RNAprotDB

All interfaces > All interologs > Interface groups > group132 > 1YHQ_K_0

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1YHQ_K
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
K:1 [MET] 0:2686 [C] 2.64 0:2708 [G] base:BB, sugar:BB 70.51
K:1 [MET] 0:2687 [G] 3.22 0:2707 [C] 70.51
K:1 [MET] 0:2708 [G] 2.81 0:2686 [C] base:BB 70.51
K:1 [MET] 0:2709 [G] 4.4 0:2685 [C] 70.51
K:2 [GLU] 0:2687 [G] 3.77 0:2707 [C] 44.17
K:2 [GLU] 0:2708 [G] 4.71 0:2686 [C] 44.17
K:2 [GLU] 0:2709 [G] 4.78 0:2685 [C] 44.17
K:3 [ALA] 0:2708 [G] 3.38 0:2686 [C] 42.81
K:3 [ALA] 0:2709 [G] 3.41 0:2685 [C] 42.81
K:4 [LEU] 0:2709 [G] 4.88 0:2685 [C] 8.02
K:7 [ASP] 0:2710 [U] 3.98 0:2684 [A] 31.84
K:7 [ASP] 0:2764 [C] 3.65 0:2716 [G] 31.84
K:8 [VAL] 0:2763 [G] 4.43 0:2717 [C] 46.47
K:9 [THR] 0:2762 [C] 3.53 70.0
K:9 [THR] 0:2763 [G] 2.62 0:2717 [C] 70.0
K:10 [GLN] 0:2710 [U] 4.87 0:2684 [A] 46.24
K:10 [GLN] 0:2711 [U] 2.99 0:2683 [G] 46.24
K:11 [GLY] 0:1743 [G] 2.53 0:2036 [C] sugar:BB 78.23
K:11 [GLY] 0:1744 [G] 3.25 0:2035 [C] sugar:BB 78.23
K:12 [LEU] 0:1743 [G] 4.51 0:2036 [C] 73.29
K:12 [LEU] 0:1744 [G] 4.26 0:2035 [C] 73.29
K:13 [GLU] 0:1743 [G] 3.94 0:2036 [C] 47.92
K:13 [GLU] 0:1744 [G] 3.16 0:2035 [C] base:SC 47.92
K:13 [GLU] 0:1747 [A] 3.64 0:2034 [U] 47.92
K:13 [GLU] 0:2036 [C] 2.71 0:1743 [G] 47.92
K:14 [LYS] 0:1747 [A] 4.48 0:2034 [U] 28.83
K:14 [LYS] 0:1993 [C] 4.44 28.83
K:14 [LYS] 0:2583 [A] 3.61 0:2595 [U] 28.83
K:14 [LYS] 0:2584 [G] 4.37 0:2594 [C] 28.83
K:14 [LYS] 0:2595 [U] 4.99 0:2583 [A] 28.83
K:14 [LYS] 0:2596 [A] 3.64 0:2582 [G] 28.83
K:15 [GLY] 0:1745 [G] 4.67 42.23
K:15 [GLY] 0:1746 [A] 4.74 0:2032 [U] 42.23
K:16 [SER] 0:1744 [G] 2.59 0:2035 [C] sugar:SC 79.44
K:16 [SER] 0:1745 [G] 3.45 79.44
K:17 [LEU] 0:1744 [G] 4.49 0:2035 [C] 0.0
K:17 [LEU] 0:1745 [G] 2.79 0.0
K:30 [LYS] 0:1992 [U] 3.29 37.18
K:30 [LYS] 0:1993 [C] 2.72 37.18
K:32 [ILE] 0:1993 [C] 3.35 88.36
K:32 [ILE] 0:2596 [A] 3.36 0:2582 [G] 88.36
K:33 [SER] 0:2596 [A] 2.52 0:2582 [G] base:SC, sugar:SC 51.12
K:33 [SER] 0:2597 [U] 3.1 0:2601 [A] 51.12
K:34 [VAL] 0:2597 [U] 2.94 0:2601 [A] 76.59
K:34 [VAL] 0:2598 [U] 4.76 0:2600 [A] 76.59
K:35 [HIS] 0:2597 [U] 3.98 0:2601 [A] 2.2
K:35 [HIS] 0:2598 [U] 3.39 0:2600 [A] 2.2
K:36 [GLY] 0:2597 [U] 3.8 0:2601 [A] 51.75
K:36 [GLY] 0:2598 [U] 2.6 0:2600 [A] 51.75
K:36 [GLY] 0:2599 [A] 4.62 51.75
K:37 [TYR] 0:2597 [U] 4.05 0:2601 [A] 7.12
K:37 [TYR] 0:2598 [U] 3.66 0:2600 [A] 7.12
K:37 [TYR] 0:2601 [A] 3.64 0:2597 [U] base:BB 7.12
K:37 [TYR] 0:2711 [U] 3.47 0:2683 [G] 7.12
K:37 [TYR] 0:2712 [G] 2.92 0:2682 [C] 7.12
K:38 [SER] 0:2598 [U] 4.53 0:2600 [A] 54.43
K:38 [SER] 0:2600 [A] 3.29 0:2598 [U] base:SC 54.43
K:38 [SER] 0:2601 [A] 2.79 0:2597 [U] base:SC 54.43
K:38 [SER] 0:2711 [U] 2.74 0:2683 [G] sugar:BB 54.43
K:38 [SER] 0:2712 [G] 3.72 0:2682 [C] 54.43
K:39 [GLY] 0:2581 [U] 4.85 62.24
K:39 [GLY] 0:2582 [G] 3.49 0:2596 [A] 62.24
K:39 [GLY] 0:2601 [A] 4.82 0:2597 [U] 62.24
K:39 [GLY] 0:2711 [U] 5.0 0:2683 [G] 62.24
K:39 [GLY] 0:2712 [G] 3.37 0:2682 [C] 62.24
K:40 [THR] 0:2037 [C] 4.44 0:1742 [A] 55.51
K:40 [THR] 0:2581 [U] 4.59 55.51
K:40 [THR] 0:2582 [G] 3.0 0:2596 [A] 55.51
K:40 [THR] 0:2583 [A] 4.04 0:2595 [U] 55.51
K:40 [THR] 0:2712 [G] 3.68 0:2682 [C] 55.51
K:40 [THR] 0:2713 [G] 3.96 0:2767 [C] 55.51
K:41 [LYS] 0:2037 [C] 4.89 0:1742 [A] 55.19
K:41 [LYS] 0:2546 [U] 2.74 0:2610 [U] 55.19
K:41 [LYS] 0:2582 [G] 3.2 0:2596 [A] 55.19
K:41 [LYS] 0:2583 [A] 3.48 0:2595 [U] 55.19
K:42 [ASN] 0:2035 [C] 4.94 0:1744 [G] 67.09
K:42 [ASN] 0:2036 [C] 3.11 0:1743 [G] 67.09
K:42 [ASN] 0:2546 [U] 2.98 0:2610 [U] 67.09
K:42 [ASN] 0:2582 [G] 3.96 0:2596 [A] 67.09
K:42 [ASN] 0:2583 [A] 2.72 0:2595 [U] 67.09
K:42 [ASN] 0:2584 [G] 4.69 0:2594 [C] 67.09
K:43 [ARG] 0:2036 [C] 3.34 0:1743 [G] 75.82
K:43 [ARG] 0:2037 [C] 2.93 0:1742 [A] 75.82
K:43 [ARG] 0:2583 [A] 3.29 0:2595 [U] 75.82
K:43 [ARG] 0:2711 [U] 4.92 0:2683 [G] 75.82
K:43 [ARG] 0:2712 [G] 2.7 0:2682 [C] 75.82
K:43 [ARG] 0:2713 [G] 3.76 0:2767 [C] 75.82
K:44 [LEU] 0:1744 [G] 3.65 0:2035 [C] 0.29
K:44 [LEU] 0:1747 [A] 3.33 0:2034 [U] 0.29
K:44 [LEU] 0:2035 [C] 3.63 0:1744 [G] 0.29
K:44 [LEU] 0:2036 [C] 2.86 0:1743 [G] sugar:BB 0.29
K:44 [LEU] 0:2583 [A] 4.42 0:2595 [U] 0.29
K:44 [LEU] 0:2584 [G] 3.64 0:2594 [C] 0.29
K:45 [PRO] 0:2583 [A] 3.02 0:2595 [U] 75.74
K:46 [LYS] 0:2712 [G] 3.81 0:2682 [C] 44.32
K:54 [THR] 0:2596 [A] 3.54 0:2582 [G] 38.76
K:54 [THR] 0:2597 [U] 2.97 0:2601 [A] 38.76
K:56 [SER] 0:1993 [C] 2.77 79.49
K:58 [THR] 0:1993 [C] 4.87 65.63
K:66 [ARG] 0:1992 [U] 3.12 base/AA stacks 58.64
K:66 [ARG] 0:1993 [C] 2.66 58.64
K:66 [ARG] 0:1994 [A] 2.73 58.64
K:68 [VAL] 0:1993 [C] 3.83 69.95
K:68 [VAL] 0:2596 [A] 4.5 0:2582 [G] 69.95
K:77 [ARG] 0:1743 [G] 3.93 0:2036 [C] 63.18
K:77 [ARG] 0:1744 [G] 2.68 0:2035 [C] 63.18
K:78 [LYS] 0:1742 [A] 3.01 0:2037 [C] base:SC, sugar:SC 57.68
K:78 [LYS] 0:1743 [G] 3.32 0:2036 [C] 57.68
K:78 [LYS] 0:2722 [G] 4.33 0:2760 [C] 57.68
K:78 [LYS] 0:2762 [C] 2.95 57.68
K:79 [PRO] 0:2721 [U] 4.34 0:2761 [A] 42.21
K:81 [ARG] 0:2720 [C] 4.67 0:2718 [C] 59.3
K:81 [ARG] 0:2763 [G] 4.57 0:2717 [C] 59.3
K:81 [ARG] 0:2764 [C] 2.89 0:2716 [G] 59.3
K:81 [ARG] 0:2765 [C] 4.35 0:2715 [G] 59.3
K:85 [GLY] 0:2720 [C] 3.92 0:2718 [C] 97.62
K:87 [ARG] 0:2720 [C] 2.5 0:2718 [C] base:SC 30.5
K:87 [ARG] 0:2721 [U] 2.73 0:2761 [A] sugar:SC 30.5
K:87 [ARG] 0:2763 [G] 2.97 0:2717 [C] sugar:SC 30.5
K:87 [ARG] 0:2764 [C] 3.88 0:2716 [G] 30.5
K:93 [ASN] 0:1743 [G] 4.41 0:2036 [C] 98.85
K:93 [ASN] 0:1744 [G] 2.93 0:2035 [C] 98.85
K:120 [ARG] 0:2709 [G] 4.56 0:2685 [C] 42.57

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group132 1YHQ_K_0 K: 50s ribosomal protein l14p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P22450 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_K_0 7OF0_L_A 0.52 0.95 2.53 0.12 Ribosomal protein L14-related compare
1YHQ_K_0 4Y4O_1O_1A 0.54 0.93 2.31 0.24 Ribosomal protein L14-related compare
1YHQ_K_0 7RYG_J_A 0.60 0.92 2.2 0.24 Ribosomal protein L14-related compare
1YHQ_K_0 6AZ3_J_4 0.53 0.88 2.33 0.24 Ribosomal protein L14-related compare
1YHQ_K_0 7K00_j_a 0.60 0.91 2.13 0.26 Ribosomal protein L14-related compare
1YHQ_K_0 6S0Z_I_A 0.62 0.93 2.34 0.28 Ribosomal protein L14-related compare
1YHQ_K_0 7O7Y_BV_B5 0.73 0.94 1.75 0.43 Ribosomal protein L14-related compare
1YHQ_K_0 6AZ3_J_2 0.86 0.83 1.04 0.5 Ribosomal protein L14-related compare
1YHQ_K_0 3CC2_K_0 1.00 1.0 0.12 0.97 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1VQ8_K_0 1YHQ_K_0 0.99 1.0 0.18 0.97 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare
1JJ2_J_0 1YHQ_K_0 0.99 1.0 0.16 0.97 Ribosomal protein L14-related Archaeal large subunit ribosomal RNA compare