RNAprotDB

All interfaces > All interologs > Interface groups > group132 > 6AZ3_J_2

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6AZ3_J
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
J:6 [ALA] 2:1371 [U] 4.07 63.78
J:6 [ALA] 2:1372 [G] 4.69 63.78
J:18 [ALA] 2:81 [G] 2.76 2:584 [C] sugar:BB 54.29
J:18 [ALA] 2:82 [G] 3.5 2:583 [OMC] 54.29
J:19 [LEU] 2:81 [G] 4.67 2:584 [C] 74.11
J:19 [LEU] 2:82 [G] 3.91 2:583 [OMC] 74.11
J:20 [PRO] 2:81 [G] 3.86 2:584 [C] 46.15
J:20 [PRO] 2:82 [G] 3.26 2:583 [OMC] 46.15
J:20 [PRO] 2:584 [C] 4.45 2:81 [G] 46.15
J:21 [VAL] 2:85 [A] 3.18 2:582 [U] 0.25
J:21 [VAL] 2:541 [A] 5.0 0.25
J:21 [VAL] 2:1356 [G] 4.51 2:1368 [C] 0.25
J:22 [GLY] 2:82 [G] 4.64 2:583 [OMC] 40.75
J:22 [GLY] 2:83 [G] 3.22 40.75
J:22 [GLY] 2:84 [A] 4.41 2:580 [U] 40.75
J:22 [GLY] 2:85 [A] 4.53 2:582 [U] 40.75
J:23 [ALA] 2:82 [G] 3.45 2:583 [OMC] 82.72
J:23 [ALA] 2:83 [G] 3.87 82.72
J:24 [VAL] 2:82 [G] 4.12 2:583 [OMC] 0.0
J:24 [VAL] 2:83 [G] 3.05 0.0
J:37 [TYR] 2:541 [A] 3.72 base:SC 14.33
J:39 [ILE] 2:541 [A] 3.48 89.66
J:39 [ILE] 2:1369 [A] 4.66 2:1355 [U] 89.66
J:40 [SER] 2:1369 [A] 2.25 2:1355 [U] sugar:SC 45.26
J:40 [SER] 2:1370 [C] 3.58 2:1374 [C] 45.26
J:41 [VAL] 2:1370 [C] 2.87 2:1374 [C] sugar:BB 76.45
J:42 [LYS] 2:1370 [C] 2.87 2:1374 [C] 24.43
J:42 [LYS] 2:1371 [U] 3.95 24.43
J:43 [GLY] 2:1370 [C] 3.44 2:1374 [C] 53.56
J:43 [GLY] 2:1371 [U] 3.26 53.56
J:44 [TYR] 2:1355 [U] 2.81 2:1369 [A] sugar:SC 28.1
J:44 [TYR] 2:1356 [G] 3.82 2:1368 [C] 28.1
J:44 [TYR] 2:1370 [C] 3.24 2:1374 [C] sugar:BB 28.1
J:44 [TYR] 2:1371 [U] 3.5 28.1
J:44 [TYR] 2:1374 [C] 4.16 2:1370 [C] 28.1
J:45 [HIS] 2:1371 [U] 3.08 sugar:SC 58.48
J:45 [HIS] 2:1372 [G] 3.01 base:SC 58.48
J:45 [HIS] 2:1373 [A2M] 4.44 58.48
J:45 [HIS] 2:1374 [C] 4.3 2:1370 [C] 58.48
J:46 [GLY] 2:1354 [U] 4.59 38.44
J:46 [GLY] 2:1355 [U] 3.5 2:1369 [A] 38.44
J:46 [GLY] 2:1373 [A2M] 4.19 38.44
J:46 [GLY] 2:1374 [C] 3.34 2:1370 [C] base:BB 38.44
J:47 [ARG] 2:1354 [U] 4.86 43.25
J:47 [ARG] 2:1355 [U] 2.88 2:1369 [A] 43.25
J:47 [ARG] 2:1356 [G] 4.02 2:1368 [C] 43.25
J:48 [LEU] 2:585 [C] 4.58 2:581 [G] 46.35
J:48 [LEU] 2:1319 [U] 4.24 2:1383 [U] 46.35
J:48 [LEU] 2:1355 [U] 3.31 2:1369 [A] 46.35
J:48 [LEU] 2:1356 [G] 3.3 2:1368 [C] 46.35
J:49 [ASN] 2:584 [C] 3.27 2:81 [G] 51.15
J:49 [ASN] 2:585 [C] 4.5 2:581 [G] 51.15
J:49 [ASN] 2:1318 [OMC] 4.95 2:1386 [G] 51.15
J:49 [ASN] 2:1319 [U] 2.64 2:1383 [U] 51.15
J:49 [ASN] 2:1355 [U] 3.77 2:1369 [A] 51.15
J:49 [ASN] 2:1356 [G] 3.07 2:1368 [C] 51.15
J:49 [ASN] 2:1357 [G] 4.9 2:1367 [C] 51.15
J:50 [ARG] 2:584 [C] 3.41 2:81 [G] 71.57
J:50 [ARG] 2:585 [C] 3.17 2:581 [G] 71.57
J:50 [ARG] 2:1355 [U] 4.34 2:1369 [A] 71.57
J:50 [ARG] 2:1356 [G] 3.32 2:1368 [C] 71.57
J:51 [LEU] 2:85 [A] 3.34 2:582 [U] 14.38
J:51 [LEU] 2:583 [OMC] 4.41 2:82 [G] 14.38
J:51 [LEU] 2:584 [C] 3.47 2:81 [G] sugar:BB 14.38
J:51 [LEU] 2:1356 [G] 3.48 2:1368 [C] 14.38
J:51 [LEU] 2:1357 [G] 4.32 2:1367 [C] 14.38
J:52 [PRO] 2:1356 [G] 3.37 2:1368 [C] 64.85
J:61 [MET] 2:1369 [A] 3.41 2:1355 [U] 42.81
J:61 [MET] 2:1370 [C] 3.38 2:1374 [C] 42.81
J:63 [SER] 2:541 [A] 2.82 75.78
J:64 [VAL] 2:541 [A] 4.85 81.65
J:65 [LYS] 2:540 [C] 3.26 68.31
J:65 [LYS] 2:541 [A] 3.4 68.31
J:72 [ARG] 2:540 [C] 4.68 70.77
J:72 [ARG] 2:541 [A] 4.76 70.77
J:73 [LYS] 2:539 [C] 3.79 2:545 [A] 38.85
J:73 [LYS] 2:540 [C] 3.1 38.85
J:73 [LYS] 2:541 [A] 3.81 38.85
J:74 [LYS] 2:541 [A] 4.06 44.69
J:75 [VAL] 2:541 [A] 3.51 57.66
J:75 [VAL] 2:1368 [C] 4.44 2:1356 [G] 57.66
J:75 [VAL] 2:1369 [A] 4.06 2:1355 [U] 57.66
J:84 [ARG] 2:81 [G] 3.17 2:584 [C] 57.31
J:84 [ARG] 2:82 [G] 3.6 2:583 [OMC] 57.31
J:85 [LYS] 2:80 [A] 3.6 43.76
J:85 [LYS] 2:81 [G] 3.46 2:584 [C] 43.76
J:100 [ASN] 2:81 [G] 4.24 2:584 [C] 96.77
J:100 [ASN] 2:82 [G] 3.11 2:583 [OMC] 96.77

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group132 6AZ3_J_2 J: 60s ribosomal protein l23, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3Q8IIA7 Ribosomal protein L14-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_J_2 7O7Y_BV_B5 0.93 0.91 0.71 0.72 Ribosomal protein L14-related Eukaryotic large subunit ribosomal RNA compare
1YHQ_K_0 6AZ3_J_2 0.86 0.83 1.04 0.5 Ribosomal protein L14-related compare
1VQ8_K_0 6AZ3_J_2 0.86 0.83 1.08 0.5 Ribosomal protein L14-related compare
1JJ2_J_0 6AZ3_J_2 0.88 0.83 1.04 0.5 Ribosomal protein L14-related compare
4Y4O_1O_1A 6AZ3_J_2 0.70 0.83 2.11 0.24 Ribosomal protein L14-related compare
3CC2_K_0 6AZ3_J_2 0.85 0.83 1.03 0.47 Ribosomal protein L14-related compare
6AZ3_J_2 7K00_j_a 0.72 0.83 1.83 0.21 Ribosomal protein L14-related compare
6AZ3_J_2 6S0Z_I_A 0.67 0.83 2.18 0.25 Ribosomal protein L14-related compare
6AZ3_J_2 7RYG_J_A 0.66 0.82 2.44 0.21 Ribosomal protein L14-related compare
6AZ3_J_2 7OF0_L_A 0.66 0.53 2.07 0.09 Ribosomal protein L14-related compare