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All interfaces > All interologs > Interface groups > group132 > 6AZ3_J_4

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_J
6AZ3_4
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
J:6 [ALA] 4:44 [G] 3.21 4:66 [C] 63.7
J:6 [ALA] 4:45 [G] 3.0 4:65 [C] 63.7
J:7 [ASN] 4:44 [G] 4.23 4:66 [C] 64.7
J:7 [ASN] 4:45 [G] 3.87 4:65 [C] 64.7
J:8 [VAL] 4:44 [G] 4.27 4:66 [C] 84.6
J:9 [LYS] 4:44 [G] 3.89 4:66 [C] 44.6
J:9 [LYS] 4:67 [A] 4.61 4:43 [U] 44.6
J:9 [LYS] 4:68 [U] 4.5 4:42 [A] 44.6
J:10 [GLY] 4:44 [G] 2.42 4:66 [C] base:BB, sugar:BB 60.2
J:10 [GLY] 4:45 [G] 3.9 4:65 [C] 60.2
J:10 [GLY] 4:66 [C] 4.28 4:44 [G] 60.2
J:10 [GLY] 4:67 [A] 3.68 4:43 [U] 60.2
J:10 [GLY] 4:68 [U] 4.28 4:42 [A] 60.2
J:11 [CYS] 4:44 [G] 4.59 4:66 [C] 24.8
J:11 [CYS] 4:45 [G] 3.5 4:65 [C] 24.8
J:11 [CYS] 4:67 [A] 3.89 4:43 [U] 24.8
J:12 [ARG] 4:67 [A] 3.28 4:43 [U] 73.0
J:12 [ARG] 4:68 [U] 3.84 4:42 [A] 73.0
J:13 [PHE] 4:67 [A] 3.58 4:43 [U] 48.5
J:13 [PHE] 4:68 [U] 3.76 4:42 [A] 48.5
J:14 [ARG] 4:67 [A] 4.28 4:43 [U] 45.9
J:14 [ARG] 4:68 [U] 2.93 4:42 [A] 45.9
J:14 [ARG] 4:69 [G] 3.15 4:41 [U] 45.9
J:14 [ARG] 4:120 [U] 2.71 sugar:SC base/AA stacks 45.9
J:14 [ARG] 4:122 [G] 3.28 4:75 [C] 45.9
J:14 [ARG] 4:123 [C] 4.35 4:74 [OMG] 45.9
J:16 [SER] 4:121 [C] 3.67 82.9
J:16 [SER] 4:122 [G] 2.41 4:75 [C] 82.9
J:17 [VAL] 4:121 [C] 4.38 67.2
J:45 [HIS] 4:43 [U] 3.73 4:67 [A] sugar:SC 58.4
J:45 [HIS] 4:69 [G] 3.47 4:41 [U] 58.4
J:45 [HIS] 4:70 [C] 4.75 4:40 [G] 58.4
J:46 [GLY] 4:70 [C] 4.54 4:40 [G] 38.4
J:47 [ARG] 4:70 [C] 3.31 4:40 [G] 43.2
J:47 [ARG] 4:71 [C] 2.51 4:126 [G] 43.2
J:50 [ARG] 4:70 [C] 2.95 4:40 [G] 71.5
J:50 [ARG] 4:71 [C] 2.94 4:126 [G] 71.5
J:85 [LYS] 4:121 [C] 3.19 43.7
J:86 [SER] 4:79 [U] 4.64 4:119 [A] 14.6
J:88 [ARG] 4:78 [C] 3.98 base:SC 46.4
J:88 [ARG] 4:122 [G] 3.71 4:75 [C] 46.4
J:88 [ARG] 4:123 [C] 3.68 4:74 [OMG] 46.4
J:90 [LYS] 4:124 [A] 4.31 4:73 [U] 22.8
J:92 [GLY] 4:78 [C] 4.62 79.2
J:94 [VAL] 4:78 [C] 4.93 3.9
J:94 [VAL] 4:79 [U] 3.41 4:119 [A] 3.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group132 6AZ3_J_4 J: 60s ribosomal protein l23, putative, Leishmania donovani (natural) 4: rRNA delta, Leishmania donovani (natural) A0A3Q8IIA7 Ribosomal protein L14-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_J_0 6AZ3_J_4 0.52 0.88 2.37 0.24 Ribosomal protein L14-related compare
3CC2_K_0 6AZ3_J_4 0.52 0.88 2.33 0.24 Ribosomal protein L14-related compare
1VQ8_K_0 6AZ3_J_4 0.53 0.88 2.31 0.24 Ribosomal protein L14-related compare
1YHQ_K_0 6AZ3_J_4 0.53 0.88 2.33 0.24 Ribosomal protein L14-related compare
6AZ3_J_4 7O7Y_BV_B5 0.70 0.9 3.32 0.25 Ribosomal protein L14-related Eukaryotic large subunit ribosomal RNA compare