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All interfaces > All interologs > Interface groups > group132 > 7K00_j_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_j
7K00_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
j:1 [MET] a:1664 [A] 3.51 a:1996 [C] 98.62
j:1 [MET] a:1665 [A] 2.74 a:1995 [U] sugar:BB 98.62
j:1 [MET] a:1666 [G] 4.09 a:1994 [C] 98.62
j:1 [MET] a:1996 [C] 3.69 a:1664 [A] 98.62
j:1 [MET] a:2726 [A] 3.47 98.62
j:2 [ILE] a:1665 [A] 4.8 a:1995 [U] 82.48
j:3 [GLN] a:1665 [A] 3.63 a:1995 [U] 43.45
j:3 [GLN] a:1666 [G] 3.61 a:1994 [C] base/AA stacks 43.45
j:3 [GLN] a:1669 [A] 4.43 a:1993 [U] 43.45
j:3 [GLN] a:1995 [U] 2.76 a:1665 [A] base:SC 43.45
j:4 [GLU] a:1666 [G] 4.54 a:1994 [C] 2.18
j:4 [GLU] a:1669 [A] 4.01 a:1993 [U] 2.18
j:4 [GLU] a:2548 [U] 2.66 a:2560 [A] sugar:SC, sugar:SC 2.18
j:4 [GLU] a:2549 [G] 4.56 a:2559 [C] 2.18
j:5 [GLN] a:1666 [G] 4.56 a:1994 [C] 34.9
j:5 [GLN] a:1667 [G] 3.37 34.9
j:5 [GLN] a:1668 [A] 3.99 a:1991 [U] 34.9
j:5 [GLN] a:1669 [A] 3.14 a:1993 [U] 34.9
j:5 [GLN] a:1952 [A] 3.91 34.9
j:5 [GLN] a:2549 [G] 4.59 a:2559 [C] 34.9
j:6 [THR] a:1666 [G] 2.58 a:1994 [C] sugar:SC 85.31
j:6 [THR] a:1667 [G] 3.67 85.31
j:7 [MET] a:1666 [G] 4.15 a:1994 [C] 6.65
j:7 [MET] a:1667 [G] 2.84 6.65
j:20 [MET] a:1952 [A] 4.44 46.25
j:22 [ILE] a:1952 [A] 3.56 92.83
j:22 [ILE] a:2561 [U] 4.37 a:2547 [A] 92.83
j:23 [LYS] a:2547 [A] 4.33 a:2561 [U] 54.08
j:23 [LYS] a:2548 [U] 2.8 a:2560 [A] base:SC 54.08
j:23 [LYS] a:2560 [A] 4.7 a:2548 [U] 54.08
j:23 [LYS] a:2561 [U] 3.14 a:2547 [A] base:SC 54.08
j:23 [LYS] a:2562 [U] 3.77 a:2566 [A] 54.08
j:24 [VAL] a:2562 [U] 4.43 a:2566 [A] 66.5
j:25 [LEU] a:2562 [U] 3.52 a:2566 [A] 43.46
j:25 [LEU] a:2563 [U] 4.31 43.46
j:26 [GLY] a:2562 [U] 4.4 a:2566 [A] 54.54
j:26 [GLY] a:2563 [U] 3.24 54.54
j:26 [GLY] a:2674 [G] 3.85 a:2646 [C] 54.54
j:27 [GLY] a:2562 [U] 4.67 a:2566 [A] 20.76
j:27 [GLY] a:2563 [U] 3.7 20.76
j:27 [GLY] a:2674 [G] 3.7 a:2646 [C] 20.76
j:28 [SER] a:2563 [U] 3.88 61.89
j:28 [SER] a:2565 [A] 3.52 61.89
j:28 [SER] a:2566 [A] 2.68 a:2562 [U] base:SC 61.89
j:28 [SER] a:2674 [G] 3.14 a:2646 [C] sugar:BB 61.89
j:28 [SER] a:2675 [A] 3.61 a:2732 [G] 61.89
j:29 [HIS] a:2546 [U] 4.79 42.58
j:29 [HIS] a:2547 [A] 3.6 a:2561 [U] 42.58
j:29 [HIS] a:2548 [U] 3.83 a:2560 [A] 42.58
j:29 [HIS] a:2566 [A] 4.9 a:2562 [U] 42.58
j:29 [HIS] a:2674 [G] 4.73 a:2646 [C] 42.58
j:29 [HIS] a:2675 [A] 3.35 a:2732 [G] 42.58
j:30 [ARG] a:2673 [G] 4.27 a:2647 [U] 47.43
j:30 [ARG] a:2674 [G] 3.53 a:2646 [C] 47.43
j:30 [ARG] a:2675 [A] 3.74 a:2732 [G] 47.43
j:31 [ARG] a:1995 [U] 4.3 a:1665 [A] 64.43
j:31 [ARG] a:1996 [C] 2.74 a:1664 [A] 64.43
j:31 [ARG] a:2674 [G] 4.57 a:2646 [C] 64.43
j:31 [ARG] a:2675 [A] 3.25 a:2732 [G] 64.43
j:31 [ARG] a:2676 [C] 2.64 a:2731 [G] 64.43
j:32 [TYR] a:1665 [A] 4.97 a:1995 [U] 0.33
j:32 [TYR] a:1995 [U] 4.57 a:1665 [A] 0.33
j:32 [TYR] a:1996 [C] 3.04 a:1664 [A] base:SC 0.33
j:32 [TYR] a:2675 [A] 4.95 a:2732 [G] 0.33
j:32 [TYR] a:2726 [A] 4.13 0.33
j:40 [LYS] a:2561 [U] 3.27 a:2547 [A] 48.94
j:40 [LYS] a:2562 [U] 2.79 a:2566 [A] 48.94
j:42 [THR] a:1952 [A] 2.96 85.38
j:43 [ILE] a:1952 [A] 4.58 83.61
j:44 [LYS] a:1951 [U] 3.69 65.58
j:44 [LYS] a:1952 [A] 3.11 65.58
j:54 [LYS] a:1951 [U] 3.66 77.93
j:55 [GLY] a:1952 [A] 3.46 68.65
j:57 [VAL] a:1952 [A] 3.3 72.13
j:57 [VAL] a:2561 [U] 4.26 a:2547 [A] 72.13
j:59 [LYS] a:2562 [U] 4.33 a:2566 [A] 49.26
j:66 [LYS] a:1665 [A] 3.84 a:1995 [U] 72.82
j:66 [LYS] a:1666 [G] 3.36 a:1994 [C] 72.82
j:67 [LYS] a:1664 [A] 3.42 a:1996 [C] 49.72
j:67 [LYS] a:1665 [A] 3.18 a:1995 [U] 49.72
j:67 [LYS] a:2726 [A] 3.34 49.72
j:67 [LYS] a:2727 [A] 4.48 a:2680 [U] 49.72
j:70 [ARG] a:2683 [C] 2.66 base:SC, base:SC, sugar:SC 41.39
j:70 [ARG] a:2684 [U] 2.97 a:2725 [A] 41.39
j:70 [ARG] a:2727 [A] 2.94 a:2680 [U] sugar:SC 41.39
j:70 [ARG] a:2728 [U] 3.52 a:2679 [A] 41.39
j:74 [GLY] a:2683 [C] 3.28 sugar:BB 78.48
j:74 [GLY] a:2684 [U] 3.7 a:2725 [A] 78.48
j:76 [VAL] a:2684 [U] 3.71 a:2725 [A] 3.03
j:76 [VAL] a:2685 [G] 4.72 a:2724 [U] 3.03
j:78 [ARG] a:2684 [U] 3.85 a:2725 [A] 47.29
j:78 [ARG] a:2685 [G] 2.9 a:2724 [U] 47.29
j:82 [ASN] a:1665 [A] 4.15 a:1995 [U] 98.65
j:82 [ASN] a:1666 [G] 2.76 a:1994 [C] 98.65
j:89 [ASN] a:2562 [U] 4.99 a:2566 [A] 44.24

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group132 7K00_j_a j: 50s ribosomal protein l14, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) P0ADY3 Ribosomal protein L14-related Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_K_0 7K00_j_a 0.60 0.91 2.13 0.26 Ribosomal protein L14-related compare
1VQ8_K_0 7K00_j_a 0.61 0.91 2.13 0.26 Ribosomal protein L14-related compare
1JJ2_J_0 7K00_j_a 0.55 0.91 2.09 0.26 Ribosomal protein L14-related compare
4Y4O_1O_1A 7K00_j_a 0.87 0.97 0.94 0.62 Ribosomal protein L14-related Bacterial large subunit ribosomal RNA compare
3CC2_K_0 7K00_j_a 0.55 0.91 2.12 0.26 Ribosomal protein L14-related compare
6S0Z_I_A 7K00_j_a 0.82 0.97 1.2 0.66 Ribosomal protein L14-related Bacterial large subunit ribosomal RNA compare
6AZ3_J_2 7K00_j_a 0.72 0.83 1.83 0.21 Ribosomal protein L14-related compare