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All interfaces > All interologs > Interface groups > group132 > 7O7Y_BV_B5

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Licorice
Surface

RNA

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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_BV
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BV:2 [SER] B5:4346 [G] 3.05 60.96
BV:3 [LYS] B5:4345 [A] 3.01 B5:4357 [A] base:SC 66.62
BV:3 [LYS] B5:4346 [G] 3.03 sugar:SC 66.62
BV:3 [LYS] B5:4347 [U] 4.78 B5:4356 [A] 66.62
BV:4 [ARG] B5:4346 [G] 2.96 base:BB base/AA stacks 65.05
BV:4 [ARG] B5:4354 [G] 4.12 B5:4349 [C] 65.05
BV:4 [ARG] B5:4355 [G] 2.84 B5:4348 [A] base:SC, base:SC 65.05
BV:5 [GLY] B5:4346 [G] 4.12 42.06
BV:6 [ARG] B5:4342 [C] 4.58 B5:4360 [G] 21.7
BV:7 [GLY] B5:4341 [G] 4.71 B5:4361 [C] 35.34
BV:7 [GLY] B5:4342 [C] 3.23 B5:4360 [G] 35.34
BV:8 [GLY] B5:4341 [G] 3.54 B5:4361 [C] 25.96
BV:8 [GLY] B5:4342 [C] 2.87 B5:4360 [G] 25.96
BV:9 [SER] B5:4341 [G] 2.83 B5:4361 [C] sugar:BB 72.1
BV:9 [SER] B5:4342 [C] 3.48 B5:4360 [G] 72.1
BV:10 [SER] B5:4341 [G] 3.63 B5:4361 [C] base:BB 52.2
BV:10 [SER] B5:4342 [C] 3.23 B5:4360 [G] 52.2
BV:10 [SER] B5:4362 [A] 4.12 B5:4340 [U] 52.2
BV:11 [GLY] B5:4362 [A] 4.0 B5:4340 [U] 19.67
BV:12 [ALA] B5:4362 [A] 3.26 B5:4340 [U] sugar:BB 9.53
BV:12 [ALA] B5:4363 [G] 3.61 B5:4339 [C] 9.53
BV:13 [LYS] B5:4363 [G] 2.52 B5:4339 [C] sugar:BB 57.05
BV:13 [LYS] B5:4364 [OMG] 4.2 B5:4338 [C] 57.05
BV:14 [PHE] B5:4363 [G] 3.35 B5:4339 [C] 34.82
BV:14 [PHE] B5:4364 [OMG] 3.84 B5:4338 [C] 34.82
BV:15 [ARG] B5:4363 [G] 4.32 B5:4339 [C] 42.04
BV:15 [ARG] B5:4364 [OMG] 2.98 B5:4338 [C] 42.04
BV:15 [ARG] B5:4365 [U] 3.65 B5:4337 [U] 42.04
BV:15 [ARG] B5:4416 [C] 2.37 sugar:SC base/AA stacks 42.04
BV:15 [ARG] B5:4417 [C] 4.36 42.04
BV:15 [ARG] B5:4418 [A] 2.49 B5:4371 [C] 42.04
BV:15 [ARG] B5:4419 [PSU] 3.18 B5:4370 [A] 42.04
BV:16 [ILE] B5:4418 [A] 4.87 B5:4371 [C] 50.69
BV:17 [SER] B5:4417 [C] 3.31 74.11
BV:17 [SER] B5:4418 [A] 2.63 B5:4371 [C] 74.11
BV:18 [LEU] B5:4417 [C] 4.39 50.43
BV:19 [GLY] B5:2689 [G] 2.37 B5:3574 [C] sugar:BB 82.42
BV:19 [GLY] B5:2690 [G] 3.27 B5:3573 [OMC] sugar:BB 82.42
BV:20 [LEU] B5:2689 [G] 4.37 B5:3574 [C] 76.88
BV:20 [LEU] B5:2690 [G] 3.82 B5:3573 [OMC] 76.88
BV:21 [PRO] B5:2689 [G] 3.78 B5:3574 [C] 42.72
BV:21 [PRO] B5:2690 [G] 3.19 B5:3573 [OMC] 42.72
BV:21 [PRO] B5:3574 [C] 4.3 B5:2689 [G] 42.72
BV:22 [VAL] B5:2690 [G] 4.83 B5:3573 [OMC] 18.2
BV:22 [VAL] B5:2693 [A] 3.32 B5:3572 [U] 18.2
BV:22 [VAL] B5:4240 [OMG] 3.83 B5:4252 [C] 18.2
BV:23 [GLY] B5:2690 [G] 4.54 B5:3573 [OMC] 43.25
BV:23 [GLY] B5:2691 [G] 3.5 43.25
BV:23 [GLY] B5:2692 [A] 4.36 B5:3570 [U] 43.25
BV:23 [GLY] B5:2693 [A] 4.78 B5:3572 [U] 43.25
BV:24 [ALA] B5:2690 [G] 3.31 B5:3573 [OMC] 76.79
BV:24 [ALA] B5:2691 [G] 3.52 76.79
BV:25 [VAL] B5:2690 [G] 4.11 B5:3573 [OMC] 0.46
BV:25 [VAL] B5:2691 [G] 2.67 0.46
BV:38 [TYR] B5:3531 [A] 3.73 base:SC 35.65
BV:38 [TYR] B5:3532 [A] 4.78 35.65
BV:40 [ILE] B5:3531 [A] 3.51 86.81
BV:40 [ILE] B5:4240 [OMG] 4.91 B5:4252 [C] 86.81
BV:40 [ILE] B5:4252 [C] 4.67 B5:4240 [OMG] 86.81
BV:40 [ILE] B5:4253 [A] 4.16 B5:4239 [U] 86.81
BV:41 [SER] B5:4253 [A] 2.34 B5:4239 [U] sugar:SC 46.62
BV:41 [SER] B5:4254 [C] 3.95 B5:4258 [U] 46.62
BV:42 [VAL] B5:4254 [C] 3.35 B5:4258 [U] sugar:BB 79.4
BV:43 [LYS] B5:4254 [C] 2.64 B5:4258 [U] 1.6
BV:43 [LYS] B5:4255 [U] 3.67 1.6
BV:44 [GLY] B5:4254 [C] 3.19 B5:4258 [U] 55.34
BV:44 [GLY] B5:4255 [U] 2.62 55.34
BV:45 [ILE] B5:4254 [C] 2.62 B5:4258 [U] sugar:BB 29.71
BV:45 [ILE] B5:4255 [U] 3.74 29.71
BV:45 [ILE] B5:4258 [U] 4.46 B5:4254 [C] 29.71
BV:46 [LYS] B5:4239 [U] 3.79 B5:4253 [A] sugar:BB 61.26
BV:46 [LYS] B5:4254 [C] 4.78 B5:4258 [U] 61.26
BV:46 [LYS] B5:4255 [U] 3.43 61.26
BV:46 [LYS] B5:4256 [A] 3.22 61.26
BV:46 [LYS] B5:4257 [A] 3.97 61.26
BV:46 [LYS] B5:4258 [U] 3.69 B5:4254 [C] 61.26
BV:46 [LYS] B5:4338 [C] 4.29 B5:4364 [OMG] 61.26
BV:46 [LYS] B5:4339 [C] 3.61 B5:4363 [G] 61.26
BV:46 [LYS] B5:4365 [U] 3.91 B5:4337 [U] 61.26
BV:47 [GLY] B5:4238 [U] 4.83 54.65
BV:47 [GLY] B5:4239 [U] 4.01 B5:4253 [A] 54.65
BV:47 [GLY] B5:4365 [U] 4.35 B5:4337 [U] 54.65
BV:47 [GLY] B5:4366 [OMU] 4.03 B5:4336 [A2M] 54.65
BV:48 [ARG] B5:3575 [C] 4.31 B5:2688 [A] 61.47
BV:48 [ARG] B5:4238 [U] 4.55 61.47
BV:48 [ARG] B5:4239 [U] 2.89 B5:4253 [A] 61.47
BV:48 [ARG] B5:4240 [OMG] 3.69 B5:4252 [C] 61.47
BV:48 [ARG] B5:4366 [OMU] 3.78 B5:4336 [A2M] 61.47
BV:48 [ARG] B5:4367 [C] 2.91 B5:4422 [G] 61.47
BV:49 [LEU] B5:4203 [PSU] 4.32 B5:4267 [PSU] 47.1
BV:49 [LEU] B5:4204 [C] 4.92 B5:4266 [G] 47.1
BV:49 [LEU] B5:4238 [U] 4.85 47.1
BV:49 [LEU] B5:4239 [U] 3.47 B5:4253 [A] 47.1
BV:49 [LEU] B5:4240 [OMG] 3.36 B5:4252 [C] 47.1
BV:50 [ASN] B5:3573 [OMC] 4.92 B5:2690 [G] 67.02
BV:50 [ASN] B5:3574 [C] 3.31 B5:2689 [G] 67.02
BV:50 [ASN] B5:4203 [PSU] 2.69 B5:4267 [PSU] 67.02
BV:50 [ASN] B5:4239 [U] 3.87 B5:4253 [A] 67.02
BV:50 [ASN] B5:4240 [OMG] 2.59 B5:4252 [C] 67.02
BV:50 [ASN] B5:4241 [G] 4.66 B5:4251 [C] 67.02
BV:51 [ARG] B5:3574 [C] 3.42 B5:2689 [G] 70.16
BV:51 [ARG] B5:3575 [C] 2.83 B5:2688 [A] 70.16
BV:51 [ARG] B5:4239 [U] 4.92 B5:4253 [A] 70.16
BV:51 [ARG] B5:4240 [OMG] 3.3 B5:4252 [C] 70.16
BV:51 [ARG] B5:4366 [OMU] 2.96 B5:4336 [A2M] 70.16
BV:51 [ARG] B5:4367 [C] 2.99 B5:4422 [G] 70.16
BV:51 [ARG] B5:4416 [C] 4.86 70.16
BV:52 [LEU] B5:2690 [G] 4.42 B5:3573 [OMC] 1.01
BV:52 [LEU] B5:2693 [A] 3.23 B5:3572 [U] 1.01
BV:52 [LEU] B5:3573 [OMC] 3.9 B5:2690 [G] 1.01
BV:52 [LEU] B5:3574 [C] 3.24 B5:2689 [G] sugar:BB 1.01
BV:52 [LEU] B5:4240 [OMG] 3.55 B5:4252 [C] 1.01
BV:52 [LEU] B5:4241 [G] 3.58 B5:4251 [C] 1.01
BV:53 [PRO] B5:4240 [OMG] 3.26 B5:4252 [C] 61.37
BV:62 [MET] B5:4253 [A] 3.75 B5:4239 [U] 43.41
BV:62 [MET] B5:4254 [C] 3.78 B5:4258 [U] 43.41
BV:64 [THR] B5:3531 [A] 3.16 75.21
BV:66 [LYS] B5:3530 [U] 3.25 68.87
BV:66 [LYS] B5:3531 [A] 3.21 68.87
BV:73 [ARG] B5:3530 [U] 4.07 77.26
BV:74 [LYS] B5:3529 [C] 3.84 B5:3535 [A] 50.72
BV:74 [LYS] B5:3530 [U] 3.2 50.72
BV:74 [LYS] B5:3531 [A] 3.38 50.72
BV:75 [LYS] B5:3531 [A] 3.72 56.38
BV:76 [VAL] B5:3531 [A] 3.44 66.87
BV:76 [VAL] B5:4252 [C] 4.89 B5:4240 [OMG] 66.87
BV:76 [VAL] B5:4253 [A] 4.57 B5:4239 [U] 66.87
BV:85 [ARG] B5:2689 [G] 3.12 B5:3574 [C] 65.35
BV:85 [ARG] B5:2690 [G] 3.54 B5:3573 [OMC] 65.35
BV:86 [LYS] B5:2688 [A] 2.76 B5:3575 [C] base:SC 61.05
BV:86 [LYS] B5:2689 [G] 3.44 B5:3574 [C] 61.05
BV:86 [LYS] B5:4376 [G] 4.79 B5:4414 [U] 61.05
BV:86 [LYS] B5:4417 [C] 3.13 61.05
BV:87 [SER] B5:4375 [U] 3.77 B5:4415 [A] 12.09
BV:89 [ARG] B5:4374 [PSU] 4.55 61.95
BV:89 [ARG] B5:4418 [A] 3.73 B5:4371 [C] 61.95
BV:89 [ARG] B5:4419 [PSU] 3.82 B5:4370 [A] 61.95
BV:91 [LYS] B5:4420 [C] 4.69 B5:4369 [OMG] 0.51
BV:93 [GLY] B5:4374 [PSU] 4.72 87.26
BV:95 [PHE] B5:4374 [PSU] 3.65 28.17
BV:95 [PHE] B5:4375 [U] 3.17 B5:4415 [A] base/AA stacks 28.17
BV:95 [PHE] B5:4418 [A] 3.53 B5:4371 [C] 28.17
BV:101 [ASN] B5:2689 [G] 4.12 B5:3574 [C] 99.0
BV:101 [ASN] B5:2690 [G] 2.97 B5:3573 [OMC] 99.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group132 7O7Y_BV_B5 BV: Ribosomal protein l23, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1T6D1 Ribosomal protein L14-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_J_4 7O7Y_BV_B5 0.70 0.9 3.32 0.25 Ribosomal protein L14-related Eukaryotic large subunit ribosomal RNA compare
1YHQ_K_0 7O7Y_BV_B5 0.73 0.94 1.75 0.43 Ribosomal protein L14-related compare
1VQ8_K_0 7O7Y_BV_B5 0.72 0.94 1.78 0.44 Ribosomal protein L14-related compare
1JJ2_J_0 7O7Y_BV_B5 0.73 0.94 1.74 0.39 Ribosomal protein L14-related compare
4Y4O_1O_1A 7O7Y_BV_B5 0.59 0.9 2.27 0.21 Ribosomal protein L14-related compare
3CC2_K_0 7O7Y_BV_B5 0.73 0.94 1.75 0.41 Ribosomal protein L14-related compare
6S0Z_I_A 7O7Y_BV_B5 0.63 0.89 2.29 0.31 Ribosomal protein L14-related compare
6AZ3_J_2 7O7Y_BV_B5 0.93 0.91 0.71 0.72 Ribosomal protein L14-related Eukaryotic large subunit ribosomal RNA compare