RNAprotDB

All interfaces > All interologs > Interface groups > group132 > 7RYG_J_A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7RYG_J
7RYG_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
J:1 [MET] A:1662 [A] 3.85 A:1992 [C] 98.85
J:1 [MET] A:1663 [A] 2.87 A:1991 [U] sugar:BB 98.85
J:1 [MET] A:1664 [G] 4.32 A:1990 [C] 98.85
J:1 [MET] A:1992 [C] 4.26 A:1662 [A] 98.85
J:1 [MET] A:2722 [U] 3.51 98.85
J:3 [GLN] A:1663 [A] 3.6 A:1991 [U] 52.19
J:3 [GLN] A:1664 [G] 3.51 A:1990 [C] base/AA stacks 52.19
J:3 [GLN] A:1667 [A] 4.75 A:1989 [U] 52.19
J:3 [GLN] A:1991 [U] 3.18 A:1663 [A] base:SC 52.19
J:4 [THR] A:1664 [G] 4.29 A:1990 [C] 26.63
J:4 [THR] A:1667 [A] 3.89 A:1989 [U] 26.63
J:4 [THR] A:1948 [A] 4.78 26.63
J:4 [THR] A:2544 [U] 4.93 A:2556 [A] 26.63
J:5 [GLU] A:1664 [G] 4.6 A:1990 [C] 49.24
J:5 [GLU] A:1665 [G] 3.33 49.24
J:5 [GLU] A:1666 [A] 3.96 A:1987 [U] 49.24
J:5 [GLU] A:1667 [A] 3.39 A:1989 [U] 49.24
J:5 [GLU] A:1948 [A] 4.32 49.24
J:6 [THR] A:1664 [G] 3.09 A:1990 [C] sugar:SC 84.39
J:6 [THR] A:1665 [G] 3.73 84.39
J:7 [MET] A:1664 [G] 4.47 A:1990 [C] 9.85
J:7 [MET] A:1665 [G] 3.05 9.85
J:20 [GLN] A:1666 [A] 4.76 A:1987 [U] 51.66
J:22 [ILE] A:1948 [A] 3.67 92.87
J:22 [ILE] A:2557 [U] 4.79 A:2543 [A] 92.87
J:23 [LYS] A:2543 [A] 4.03 A:2557 [U] 62.18
J:23 [LYS] A:2544 [U] 2.76 A:2556 [A] base:SC 62.18
J:23 [LYS] A:2556 [A] 4.91 A:2544 [U] 62.18
J:23 [LYS] A:2557 [U] 3.5 A:2543 [A] base:SC 62.18
J:23 [LYS] A:2558 [U] 4.22 A:2562 [A] 62.18
J:24 [VAL] A:2558 [U] 4.69 A:2562 [A] 61.86
J:25 [LEU] A:2558 [U] 3.63 A:2562 [A] 37.76
J:25 [LEU] A:2559 [U] 4.55 A:2561 [A] 37.76
J:26 [GLY] A:2559 [U] 4.1 A:2561 [A] 53.33
J:26 [GLY] A:2670 [G] 4.12 A:2642 [C] 53.33
J:27 [GLY] A:2558 [U] 4.38 A:2562 [A] 36.78
J:27 [GLY] A:2559 [U] 4.16 A:2561 [A] 36.78
J:27 [GLY] A:2670 [G] 3.84 A:2642 [C] 36.78
J:28 [SER] A:2543 [A] 4.89 A:2557 [U] 66.0
J:28 [SER] A:2559 [U] 4.23 A:2561 [A] 66.0
J:28 [SER] A:2561 [A] 3.92 A:2559 [U] 66.0
J:28 [SER] A:2562 [A] 2.89 A:2558 [U] base:SC 66.0
J:28 [SER] A:2670 [G] 3.46 A:2642 [C] 66.0
J:28 [SER] A:2671 [A] 3.93 A:2728 [G] 66.0
J:29 [HIS] A:2542 [U] 4.73 49.45
J:29 [HIS] A:2543 [A] 3.29 A:2557 [U] 49.45
J:29 [HIS] A:2544 [U] 4.36 A:2556 [A] 49.45
J:29 [HIS] A:2671 [A] 3.51 A:2728 [G] 49.45
J:30 [ARG] A:2669 [G] 4.48 A:2643 [U] 48.6
J:30 [ARG] A:2670 [G] 3.35 A:2642 [C] 48.6
J:30 [ARG] A:2671 [A] 3.92 A:2728 [G] 48.6
J:31 [ARG] A:1991 [U] 4.23 A:1663 [A] 58.19
J:31 [ARG] A:1992 [C] 3.11 A:1662 [A] 58.19
J:31 [ARG] A:2671 [A] 3.73 A:2728 [G] 58.19
J:31 [ARG] A:2672 [C] 3.15 A:2727 [G] 58.19
J:32 [TYR] A:1991 [U] 4.29 A:1663 [A] 0.0
J:32 [TYR] A:1992 [C] 3.22 A:1662 [A] base:SC 0.0
J:32 [TYR] A:2722 [U] 4.63 0.0
J:40 [LYS] A:2557 [U] 3.78 A:2543 [A] 59.28
J:40 [LYS] A:2558 [U] 3.29 A:2562 [A] 59.28
J:42 [THR] A:1948 [A] 3.14 84.56
J:43 [VAL] A:1948 [A] 4.92 82.81
J:44 [LYS] A:1947 [U] 3.8 74.95
J:44 [LYS] A:1948 [A] 2.96 74.95
J:54 [LYS] A:1947 [U] 4.11 79.65
J:55 [GLY] A:1948 [A] 3.76 71.78
J:57 [VAL] A:1948 [A] 3.82 70.69
J:57 [VAL] A:2557 [U] 4.68 A:2543 [A] 70.69
J:59 [ASN] A:2558 [U] 4.94 A:2562 [A] 48.61
J:66 [LYS] A:1663 [A] 4.3 A:1991 [U] 75.01
J:66 [LYS] A:1664 [G] 3.25 A:1990 [C] 75.01
J:67 [PHE] A:1662 [A] 4.24 A:1992 [C] 62.02
J:67 [PHE] A:1663 [A] 3.55 A:1991 [U] 62.02
J:67 [PHE] A:2722 [U] 4.0 62.02
J:67 [PHE] A:2723 [G] 3.86 A:2676 [C] 62.02
J:70 [ARG] A:2679 [C] 2.99 base:SC 44.8
J:70 [ARG] A:2680 [U] 3.42 A:2721 [A] 44.8
J:70 [ARG] A:2723 [G] 3.37 A:2676 [C] 44.8
J:70 [ARG] A:2724 [U] 4.3 A:2675 [A] 44.8
J:74 [GLY] A:2679 [C] 3.1 sugar:BB 85.18
J:74 [GLY] A:2680 [U] 3.81 A:2721 [A] 85.18
J:76 [VAL] A:2680 [U] 3.92 A:2721 [A] 0.31
J:76 [VAL] A:2681 [G] 4.88 A:2720 [U] 0.31
J:78 [ARG] A:2680 [U] 4.59 A:2721 [A] 68.88
J:78 [ARG] A:2681 [G] 3.38 A:2720 [U] 68.88
J:82 [ASN] A:1663 [A] 4.57 A:1991 [U] 98.59
J:82 [ASN] A:1664 [G] 3.33 A:1990 [C] 98.59

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group132 7RYG_J_A J: 50s ribosomal protein l14, Acinetobacter baumannii ab0057 (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) N8SHC6 Ribosomal protein L14-related Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_K_0 7RYG_J_A 0.60 0.92 2.2 0.24 Ribosomal protein L14-related compare
1VQ8_K_0 7RYG_J_A 0.60 0.92 2.17 0.24 Ribosomal protein L14-related compare
1JJ2_J_0 7RYG_J_A 0.60 0.92 2.21 0.27 Ribosomal protein L14-related compare
7OF0_L_A 7RYG_J_A 0.63 0.93 2.2 0.19 Ribosomal protein L14-related Bacterial large subunit ribosomal RNA compare
4Y4O_1O_1A 7RYG_J_A 0.86 0.96 1.53 0.52 Ribosomal protein L14-related Bacterial large subunit ribosomal RNA compare
3CC2_K_0 7RYG_J_A 0.60 0.92 2.25 0.24 Ribosomal protein L14-related compare
6S0Z_I_A 7RYG_J_A 0.82 0.98 0.87 0.69 Ribosomal protein L14-related Bacterial large subunit ribosomal RNA compare
6AZ3_J_2 7RYG_J_A 0.66 0.82 2.44 0.21 Ribosomal protein L14-related compare