RNAprotDB

All interfaces > All interologs > Interface groups > group133 > 1MJI_A_C

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1MJI_A
1MJI_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:36 [LYS] C:29 [A] 3.61 C:55 [U] 88.75
A:36 [LYS] C:30 [C] 2.81 C:54 [G] 88.75
A:38 [VAL] C:28 [C] 3.87 C:56 [G] 67.12
A:38 [VAL] C:29 [A] 3.5 C:55 [U] 67.12
A:40 [ASN] C:27 [G] 3.6 C:57 [C] sugar:SC 85.58
A:40 [ASN] C:28 [C] 3.13 C:56 [G] 85.58
A:42 [GLY] C:27 [G] 4.95 C:57 [C] 72.9
A:45 [GLU] C:26 [G] 4.95 C:58 [C] 14.59
A:71 [THR] C:27 [G] 4.44 C:57 [C] 75.65
A:71 [THR] C:28 [C] 3.27 C:56 [G] 75.65
A:74 [LYS] C:37 [C] 3.86 81.48
A:74 [LYS] C:49 [C] 3.75 C:33 [G] 81.48
A:74 [LYS] C:50 [A] 3.61 C:32 [U] 81.48
A:75 [LYS] C:36 [C] 3.95 66.59
A:75 [LYS] C:49 [C] 4.54 C:33 [G] 66.59
A:75 [LYS] C:50 [A] 3.92 C:32 [U] 66.59
A:88 [ILE] C:27 [G] 3.88 C:57 [C] 77.53
A:88 [ILE] C:28 [C] 4.36 C:56 [G] 77.53
A:91 [ARG] C:28 [C] 4.03 C:56 [G] 66.22
A:91 [ARG] C:29 [A] 3.56 C:55 [U] 66.22
A:91 [ARG] C:48 [U] 4.4 C:34 [A] 66.22
A:123 [ASN] C:56 [G] 4.29 C:28 [C] 43.31
A:123 [ASN] C:57 [C] 4.7 C:27 [G] 43.31
A:124 [SER] C:56 [G] 3.27 C:28 [C] 70.62
A:124 [SER] C:57 [C] 2.96 C:27 [G] 70.62
A:125 [PHE] C:55 [U] 4.66 C:29 [A] 62.56
A:125 [PHE] C:56 [G] 3.21 C:28 [C] 62.56
A:126 [ASP] C:29 [A] 4.59 C:55 [U] 88.49
A:126 [ASP] C:30 [C] 3.46 C:54 [G] 88.49
A:126 [ASP] C:55 [U] 2.68 C:29 [A] 88.49
A:126 [ASP] C:56 [G] 3.33 C:28 [C] 88.49
A:127 [GLY] C:55 [U] 4.14 C:29 [A] 12.83
A:128 [ARG] C:30 [C] 3.37 C:54 [G] 24.31
A:128 [ARG] C:31 [C] 3.74 C:51 [G] 24.31
A:130 [ASN] C:29 [A] 4.84 C:55 [U] 92.16
A:130 [ASN] C:30 [C] 3.11 C:54 [G] sugar:SC 92.16
A:132 [ASN] C:29 [A] 4.03 C:55 [U] 76.59
A:132 [ASN] C:56 [G] 3.16 C:28 [C] sugar:SC 76.59
A:132 [ASN] C:57 [C] 3.7 C:27 [G] 76.59
A:133 [LEU] C:57 [C] 3.59 C:27 [G] 62.02
A:134 [GLY] C:57 [C] 3.52 C:27 [G] 83.59
A:134 [GLY] C:58 [C] 4.34 C:26 [G] 83.59
A:136 [ARG] C:59 [C] 4.51 32.8
A:153 [ARG] C:26 [G] 3.25 C:58 [C] base:SC 25.56
A:153 [ARG] C:27 [G] 3.37 C:57 [C] base:SC, sugar:SC 25.56
A:153 [ARG] C:58 [C] 2.62 C:26 [G] base:SC 25.56
A:153 [ARG] C:59 [C] 3.94 25.56
A:154 [GLY] C:58 [C] 4.25 C:26 [G] 93.57
A:156 [ASP] C:27 [G] 2.95 C:57 [C] base:SC 65.68
A:156 [ASP] C:28 [C] 4.14 C:56 [G] 65.68
A:156 [ASP] C:57 [C] 3.68 C:27 [G] 65.68
A:156 [ASP] C:58 [C] 3.7 C:26 [G] 65.68
A:158 [ALA] C:29 [A] 3.51 C:55 [U] 75.48
A:160 [VAL] C:29 [A] 3.16 C:55 [U] 56.85
A:160 [VAL] C:30 [C] 4.08 C:54 [G] 56.85

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group133 1MJI_A_C A: 50s ribosomal protein l5, Thermus thermophilus (genetically engineered) C: 5s rRNA fragment, Escherichia coli (genetically engineered) P41201 Ribosomal protein L5 ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1MJI_A_C 1VQ8_D_0 0.69 0.56 1.45 0.06 Ribosomal protein L5 compare
1MJI_A_C 5NS4_A_C 0.94 0.98 0.49 0.82 Ribosomal protein L5 compare
1MJI_A_C 7ASM_F_A 0.39 0.7 1.49 0.17 Ribosomal protein L5 compare
1MJI_A_C 5NS3_A_C 0.98 0.98 0.47 0.8 Ribosomal protein L5 compare