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All interfaces > All interologs > Interface groups > group133 > 1MJI_A_C vs 1VQ8_D_0

Interface analysis


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Licorice
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Licorice
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Common contacts -

1MJI_A
1MJI_C
1VQ8_D
1VQ8_0
Conserved?
A:88 [ILE] C:27 [G] D:69 [ILE] 0:2346 [C] ✔
A:128 [ARG] C:30 [C] D:101 [THR] 0:2349 [G] ✔
A:128 [ARG] C:31 [C] D:101 [THR] 0:2350 [G] ✔
A:156 [ASP] C:27 [G] D:129 [ASP] 0:2346 [C] ✔
A:156 [ASP] C:28 [C] D:129 [ASP] 0:2347 [C] ✔
A:36 [LYS] C:29 [A] D:20 [LYS] 0:2348 [C] ✔
A:36 [LYS] C:30 [C] D:20 [LYS] 0:2349 [G] ✔
A:38 [VAL] C:28 [C] D:22 [VAL] 0:2347 [C] ✔
A:38 [VAL] C:29 [A] D:22 [VAL] 0:2348 [C] ✔
A:71 [THR] C:27 [G] D:52 [THR] 0:2346 [C] ✔
A:71 [THR] C:28 [C] D:52 [THR] 0:2347 [C] ✔
A:74 [LYS] C:37 [C] D:55 [LYS] 0:2372 [A] ✔
A:40 [ASN] C:27 [G] D:24 [HIS] 0:2346 [C] ✔
A:40 [ASN] C:28 [C] D:24 [HIS] 0:2347 [C] ✔
A:42 [GLY] C:27 [G] D:26 [GLY] 0:2346 [C] ✔
A:130 [ASN] C:29 [A] D:103 [ASN] 0:2348 [C] ✔
A:130 [ASN] C:30 [C] D:103 [ASN] 0:2349 [G] ✔
A:126 [ASP] C:29 [A] D:99 [ASP] 0:2348 [C] ✔
A:126 [ASP] C:30 [C] D:99 [ASP] 0:2349 [G] ✔
A:91 [ARG] C:28 [C] D:72 [LYS] 0:2347 [C] ✔
A:91 [ARG] C:29 [A] D:72 [LYS] 0:2348 [C] ✔
A:158 [ALA] C:29 [A] D:131 [THR] 0:2348 [C] ✔
A:160 [VAL] C:29 [A] D:133 [ASN] 0:2348 [C] ✔
A:160 [VAL] C:30 [C] D:133 [ASN] 0:2349 [G] ✔
A:88 [ILE] C:28 [C] D:69 [ILE] 0:2347 [C] ❌ 1VQ8_D_0
A:132 [ASN] C:29 [A] D:105 [SER] 0:2348 [C] ❌ 1VQ8_D_0
A:158 [ALA] C:28 [C] D:131 [THR] 0:2347 [C] ❌ 1MJI_A_C
A:42 [GLY] C:26 [G] D:26 [GLY] 0:2345 [A] ❌ 1MJI_A_C
A:74 [LYS] C:26 [G] D:55 [LYS] 0:2345 [A] ❌ 1MJI_A_C
A:74 [LYS] C:27 [G] D:55 [LYS] 0:2346 [C] ❌ 1MJI_A_C
A:88 [ILE] C:26 [G] D:69 [ILE] 0:2345 [A] ❌ 1MJI_A_C
A:75 [LYS] C:36 [C] D:56 [ARG] 0:2371 [G] ❌ 1VQ8_0:2371 no longer at interface
A:72 [ARG] C:38 [C] D:53 [LYS] 0:2373 [U] ❌ 1MJI_A:72, 1MJI_C:38 no longer at interface
A:45 [GLU] C:26 [G] D:28 [GLY] 0:2345 [A] ❌ 1VQ8_D:28 no longer at interface
A:43 [LEU] C:26 [G] D:27 [ILE] 0:2345 [A] ❌ 1MJI_A:43 no longer at interface
A:72 [ARG] C:27 [G] D:53 [LYS] 0:2346 [C] ❌ 1MJI_A:72 no longer at interface
A:72 [ARG] C:28 [C] D:53 [LYS] 0:2347 [C] ❌ 1MJI_A:72 no longer at interface
A:73 [ALA] C:26 [G] D:54 [ALA] 0:2345 [A] ❌ 1MJI_A:73 no longer at interface
A:73 [ALA] C:27 [G] D:54 [ALA] 0:2346 [C] ❌ 1MJI_A:73 no longer at interface
A:77 [ILE] C:26 [G] D:58 [VAL] 0:2345 [A] ❌ 1MJI_A:77 no longer at interface
A:80 [PHE] C:26 [G] D:60 [GLU] 0:2345 [A] ❌ 1MJI_A:80 no longer at interface
A:83 [ARG] C:26 [G] D:62 [ASP] 0:2345 [A] ❌ 1MJI_A:83 no longer at interface
A:89 [GLY] C:27 [G] D:70 [GLY] 0:2346 [C] ❌ 1MJI_A:89 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 0.56 1.45 0.06 0.74 0.2 0.81 0.44 0.69 0.45 0.25 0.63


Other pairs involving 1MJI_A_C or 1VQ8_D_0

Total number of entries: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_D_0 7O7Y_BJ_B5 0.34 0.93 3.98 0.05 Ribosomal protein L5 compare
1VQ8_D_0 4Y4O_1G_1A 0.75 0.93 3.28 0.21 Ribosomal protein L5 compare
1VQ8_D_0 7K00_f_a 0.35 0.9 3.47 0.08 Ribosomal protein L5 compare
1VQ8_D_0 6S0Z_F_A 0.67 0.93 3.72 0.29 Ribosomal protein L5 compare
1VQ8_D_0 7RYG_F_A 0.77 0.9 2.91 0.4 Ribosomal protein L5 compare
1VQ8_D_0 7ASM_F_A 0.45 0.91 3.35 0.31 Ribosomal protein L5 compare
1VQ8_D_0 5NS4_A_C 0.72 0.64 1.29 0.09 Ribosomal protein L5 compare
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1VQ8_D_0 6AZ3_D_2 0.50 0.8 2.77 0.21 Ribosomal protein L5 compare
1VQ8_D_0 5NS3_A_C 0.70 0.64 1.28 0.1 Ribosomal protein L5 compare
1MJI_A_C 1VQ8_D_0 0.69 0.56 1.45 0.06 Ribosomal protein L5 compare
1MJI_A_C 5NS4_A_C 0.94 0.98 0.49 0.82 Ribosomal protein L5 compare
1MJI_A_C 7ASM_F_A 0.39 0.7 1.49 0.17 Ribosomal protein L5 compare
1MJI_A_C 5NS3_A_C 0.98 0.98 0.47 0.8 Ribosomal protein L5 compare