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All interfaces > All interologs > Interface groups > group133 > 1VQ8_D_0 vs 1YHQ_D_0

Interface analysis


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Common contacts -

1VQ8_D
1VQ8_0
1YHQ_D
1YHQ_0
Conserved?
D:24 [HIS] 0:2338 [G] D:24 [HIS] 0:2338 [G] ✔
D:24 [HIS] 0:2346 [C] D:24 [HIS] 0:2346 [C] ✔
D:24 [HIS] 0:2347 [C] D:24 [HIS] 0:2347 [C] ✔
D:131 [THR] 0:2337 [G] D:131 [THR] 0:2337 [G] ✔
D:131 [THR] 0:2347 [C] D:131 [THR] 0:2347 [C] ✔
D:131 [THR] 0:2348 [C] D:131 [THR] 0:2348 [C] ✔
D:133 [ASN] 0:2348 [C] D:133 [ASN] 0:2348 [C] ✔
D:133 [ASN] 0:2349 [G] D:133 [ASN] 0:2349 [G] ✔
D:54 [ALA] 0:2345 [A] D:54 [ALA] 0:2345 [A] ✔
D:54 [ALA] 0:2346 [C] D:54 [ALA] 0:2346 [C] ✔
D:107 [GLY] 0:2338 [G] D:107 [GLY] 0:2338 [G] ✔
D:60 [GLU] 0:2344 [G] D:60 [GLU] 0:2344 [G] ✔
D:60 [GLU] 0:2345 [A] D:60 [GLU] 0:2345 [A] ✔
D:96 [SER] 0:2337 [G] D:96 [SER] 0:2337 [G] ✔
D:96 [SER] 0:2338 [G] D:96 [SER] 0:2338 [G] ✔
D:56 [ARG] 0:2332 [A] D:56 [ARG] 0:2332 [A] ✔
D:56 [ARG] 0:2333 [G] D:56 [ARG] 0:2333 [G] ✔
D:27 [ILE] 0:2345 [A] D:27 [ILE] 0:2345 [A] ✔
D:101 [THR] 0:2349 [G] D:101 [THR] 0:2349 [G] ✔
D:101 [THR] 0:2350 [G] D:101 [THR] 0:2350 [G] ✔
D:150 [SER] 0:2351 [C] D:150 [SER] 0:2351 [C] ✔
D:58 [VAL] 0:2344 [G] D:58 [VAL] 0:2344 [G] ✔
D:58 [VAL] 0:2345 [A] D:58 [VAL] 0:2345 [A] ✔
D:99 [ASP] 0:2336 [G] D:99 [ASP] 0:2336 [G] ✔
D:99 [ASP] 0:2337 [G] D:99 [ASP] 0:2337 [G] ✔
D:99 [ASP] 0:2348 [C] D:99 [ASP] 0:2348 [C] ✔
D:99 [ASP] 0:2349 [G] D:99 [ASP] 0:2349 [G] ✔
D:70 [GLY] 0:2346 [C] D:70 [GLY] 0:2346 [C] ✔
D:22 [VAL] 0:2347 [C] D:22 [VAL] 0:2347 [C] ✔
D:22 [VAL] 0:2348 [C] D:22 [VAL] 0:2348 [C] ✔
D:145 [ASP] 0:2329 [C] D:145 [ASP] 0:2329 [C] ✔
D:145 [ASP] 0:2368 [A] D:145 [ASP] 0:2368 [A] ✔
D:100 [ASP] 0:2336 [G] D:100 [ASP] 0:2336 [G] ✔
D:104 [PHE] 0:2337 [G] D:104 [PHE] 0:2337 [G] ✔
D:72 [LYS] 0:2347 [C] D:72 [LYS] 0:2347 [C] ✔
D:72 [LYS] 0:2348 [C] D:72 [LYS] 0:2348 [C] ✔
D:53 [LYS] 0:2346 [C] D:53 [LYS] 0:2346 [C] ✔
D:53 [LYS] 0:2347 [C] D:53 [LYS] 0:2347 [C] ✔
D:53 [LYS] 0:2373 [U] D:53 [LYS] 0:2373 [U] ✔
D:53 [LYS] 0:2374 [A] D:53 [LYS] 0:2374 [G] ✔
D:69 [ILE] 0:2345 [A] D:69 [ILE] 0:2345 [A] ✔
D:69 [ILE] 0:2346 [C] D:69 [ILE] 0:2346 [C] ✔
D:106 [PHE] 0:2338 [G] D:106 [PHE] 0:2338 [G] ✔
D:105 [SER] 0:2337 [G] D:105 [SER] 0:2337 [G] ✔
D:105 [SER] 0:2338 [G] D:105 [SER] 0:2338 [G] ✔
D:55 [LYS] 0:2345 [A] D:55 [LYS] 0:2345 [A] ✔
D:55 [LYS] 0:2346 [C] D:55 [LYS] 0:2346 [C] ✔
D:129 [ASP] 0:2338 [G] D:129 [ASP] 0:2338 [G] ✔
D:129 [ASP] 0:2346 [C] D:129 [ASP] 0:2346 [C] ✔
D:103 [ASN] 0:2348 [C] D:103 [ASN] 0:2348 [C] ✔
D:103 [ASN] 0:2349 [G] D:103 [ASN] 0:2349 [G] ✔
D:26 [GLY] 0:2345 [A] D:26 [GLY] 0:2345 [A] ✔
D:26 [GLY] 0:2346 [C] D:26 [GLY] 0:2346 [C] ✔
D:98 [PHE] 0:2336 [G] D:98 [PHE] 0:2336 [G] ✔
D:98 [PHE] 0:2337 [G] D:98 [PHE] 0:2337 [G] ✔
D:20 [LYS] 0:2348 [C] D:20 [LYS] 0:2348 [C] ✔
D:20 [LYS] 0:2349 [G] D:20 [LYS] 0:2349 [G] ✔
D:52 [THR] 0:2346 [C] D:52 [THR] 0:2346 [C] ✔
D:52 [THR] 0:2347 [C] D:52 [THR] 0:2347 [C] ✔
D:65 [GLU] 0:2373 [U] D:65 [GLU] 0:2373 [U] ✔
D:130 [VAL] 0:2338 [G] D:130 [VAL] 0:2338 [G] ✔
D:139 [TYR] 0:2349 [G] D:139 [TYR] 0:2349 [G] ✔
D:139 [TYR] 0:2350 [G] D:139 [TYR] 0:2350 [G] ✔
D:143 [LYS] 0:2349 [G] D:143 [LYS] 0:2349 [G] ✔
D:62 [ASP] 0:2345 [A] D:62 [ASP] 0:2345 [A] ✔
D:97 [GLN] 0:2337 [G] D:97 [GLN] 0:2337 [G] ✔
D:97 [GLN] 0:2338 [G] D:97 [GLN] 0:2338 [G] ✔
D:156 [ARG] 0:2350 [G] D:156 [ARG] 0:2350 [G] ✔
D:156 [ARG] 0:2351 [C] D:156 [ARG] 0:2351 [C] ✔
D:129 [ASP] 0:2347 [C] D:129 [ASP] 0:2347 [C] ❌ 1YHQ_D_0
D:103 [ASN] 0:2337 [G] D:103 [ASN] 0:2337 [G] ❌ 1YHQ_D_0
D:55 [LYS] 0:2332 [A] D:55 [LYS] 0:2332 [A] ❌ 1VQ8_D_0
D:55 [LYS] 0:2372 [A] D:55 [LYS] 0:2372 [A] ❌ 1YHQ_0:2372 no longer at interface
D:59 [GLY] 0:2344 [G] D:59 [GLY] 0:2344 [G] ❌ 1YHQ_D:59 no longer at interface
D:128 [LEU] 0:2338 [G] D:128 [LEU] 0:2338 [G] ❌ 1YHQ_D:128 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 Archaeal large subunit ribosomal RNA 1.0 0.39 0.94 1.0 1.0 1.0 1.0 0.99 0.97 0.70 0.50


Other pairs involving 1VQ8_D_0 or 1YHQ_D_0

Total number of entries: 20

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_D_0 7O7Y_BJ_B5 0.34 0.93 3.98 0.05 Ribosomal protein L5 compare
1VQ8_D_0 4Y4O_1G_1A 0.75 0.93 3.28 0.21 Ribosomal protein L5 compare
1VQ8_D_0 7K00_f_a 0.35 0.9 3.47 0.08 Ribosomal protein L5 compare
1VQ8_D_0 6S0Z_F_A 0.67 0.93 3.72 0.29 Ribosomal protein L5 compare
1VQ8_D_0 7RYG_F_A 0.77 0.9 2.91 0.4 Ribosomal protein L5 compare
1VQ8_D_0 7ASM_F_A 0.45 0.91 3.35 0.31 Ribosomal protein L5 compare
1VQ8_D_0 5NS4_A_C 0.72 0.64 1.29 0.09 Ribosomal protein L5 compare
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1VQ8_D_0 6AZ3_D_2 0.50 0.8 2.77 0.21 Ribosomal protein L5 compare
1VQ8_D_0 5NS3_A_C 0.70 0.64 1.28 0.1 Ribosomal protein L5 compare
1MJI_A_C 1VQ8_D_0 0.69 0.56 1.45 0.06 Ribosomal protein L5 compare
1YHQ_D_0 7RYG_F_A 0.71 0.9 2.81 0.38 Ribosomal protein L5 compare
1YHQ_D_0 5NS4_A_C 0.72 0.65 1.31 0.09 Ribosomal protein L5 compare
1YHQ_D_0 7O7Y_BJ_B5 0.31 0.93 3.99 0.05 Ribosomal protein L5 compare
1YHQ_D_0 6AZ3_D_2 0.66 0.81 2.69 0.24 Ribosomal protein L5 compare
1YHQ_D_0 6S0Z_F_A 0.68 0.93 3.49 0.29 Ribosomal protein L5 compare
1YHQ_D_0 5NS3_A_C 0.68 0.64 1.27 0.1 Ribosomal protein L5 compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
1YHQ_D_0 7K00_f_a 0.40 0.9 3.5 0.14 Ribosomal protein L5 compare