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All interfaces > All interologs > Interface groups > group133 > 1VQ8_D_0 vs 7ASM_F_A

Interface analysis


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Common contacts -

1VQ8_D
1VQ8_0
7ASM_F
7ASM_A
Conserved?
D:24 [HIS] 0:2347 [C] F:37 [ASN] A:2340 [C] ✔
D:131 [THR] 0:2347 [C] F:155 [VAL] A:2340 [C] ✔
D:131 [THR] 0:2348 [C] F:155 [VAL] A:2341 [A] ✔
D:54 [ALA] 0:2346 [C] F:70 [ALA] A:2339 [U] ✔
D:60 [GLU] 0:2345 [A] F:77 [PHE] A:2338 [A] ✔
D:96 [SER] 0:2337 [G] F:120 [LYS] A:2330 [G] ✔
D:101 [THR] 0:2349 [G] F:125 [ARG] A:2342 [U] ✔
D:58 [VAL] 0:2344 [G] F:75 [ALA] A:2337 [A] ✔
D:99 [ASP] 0:2336 [G] F:123 [ASP] A:2329 [U] ✔
D:99 [ASP] 0:2337 [G] F:123 [ASP] A:2330 [G] ✔
D:70 [GLY] 0:2346 [C] F:86 [GLY] A:2339 [U] ✔
D:22 [VAL] 0:2347 [C] F:35 [VAL] A:2340 [C] ✔
D:22 [VAL] 0:2348 [C] F:35 [VAL] A:2341 [A] ✔
D:100 [ASP] 0:2336 [G] F:124 [GLY] A:2329 [U] ✔
D:104 [PHE] 0:2337 [G] F:128 [TYR] A:2330 [G] ✔
D:72 [LYS] 0:2347 [C] F:88 [LYS] A:2340 [C] ✔
D:53 [LYS] 0:2346 [C] F:69 [LYS] A:2339 [U] ✔
D:69 [ILE] 0:2346 [C] F:85 [ILE] A:2339 [U] ✔
D:106 [PHE] 0:2338 [G] F:130 [LEU] A:2331 [G] ✔
D:105 [SER] 0:2337 [G] F:129 [THR] A:2330 [G] ✔
D:105 [SER] 0:2338 [G] F:129 [THR] A:2331 [G] ✔
D:55 [LYS] 0:2346 [C] F:71 [LYS] A:2339 [U] ✔
D:26 [GLY] 0:2346 [C] F:39 [GLY] A:2339 [U] ✔
D:98 [PHE] 0:2336 [G] F:122 [PHE] A:2329 [U] ✔
D:52 [THR] 0:2346 [C] F:68 [THR] A:2339 [U] ✔
D:52 [THR] 0:2347 [C] F:68 [THR] A:2340 [C] ✔
D:62 [ASP] 0:2345 [A] F:78 [ARG] A:2338 [A] ✔
D:97 [GLN] 0:2337 [G] F:121 [ALA] A:2330 [G] ✔
D:24 [HIS] 0:2338 [G] F:37 [ASN] A:2331 [G] ❌ 7ASM_F_A
D:24 [HIS] 0:2346 [C] F:37 [ASN] A:2339 [U] ❌ 7ASM_F_A
D:131 [THR] 0:2337 [G] F:155 [VAL] A:2330 [G] ❌ 7ASM_F_A
D:54 [ALA] 0:2345 [A] F:70 [ALA] A:2338 [A] ❌ 7ASM_F_A
D:107 [GLY] 0:2338 [G] F:132 [VAL] A:2331 [G] ❌ 7ASM_F_A
D:60 [GLU] 0:2344 [G] F:77 [PHE] A:2337 [A] ❌ 7ASM_F_A
D:96 [SER] 0:2338 [G] F:120 [LYS] A:2331 [G] ❌ 7ASM_F_A
D:59 [GLY] 0:2344 [G] F:76 [THR] A:2337 [A] ❌ 7ASM_F_A
D:58 [VAL] 0:2345 [A] F:75 [ALA] A:2338 [A] ❌ 7ASM_F_A
D:99 [ASP] 0:2348 [C] F:123 [ASP] A:2341 [A] ❌ 7ASM_F_A
D:99 [ASP] 0:2349 [G] F:123 [ASP] A:2342 [U] ❌ 7ASM_F_A
D:72 [LYS] 0:2348 [C] F:88 [LYS] A:2341 [A] ❌ 7ASM_F_A
D:53 [LYS] 0:2347 [C] F:69 [LYS] A:2340 [C] ❌ 7ASM_F_A
D:69 [ILE] 0:2345 [A] F:85 [ILE] A:2338 [A] ❌ 7ASM_F_A
D:55 [LYS] 0:2345 [A] F:71 [LYS] A:2338 [A] ❌ 7ASM_F_A
D:26 [GLY] 0:2345 [A] F:39 [GLY] A:2338 [A] ❌ 7ASM_F_A
D:128 [LEU] 0:2338 [G] F:152 [MET] A:2331 [G] ❌ 7ASM_F_A
D:98 [PHE] 0:2337 [G] F:122 [PHE] A:2330 [G] ❌ 7ASM_F_A
D:97 [GLN] 0:2338 [G] F:121 [ALA] A:2331 [G] ❌ 7ASM_F_A
D:56 [ARG] 0:2332 [A] F:73 [SER] A:2325 [A] ❌ 7ASM_F:73, 7ASM_A:2325 no longer at interface
D:56 [ARG] 0:2333 [G] F:73 [SER] A:2326 [G] ❌ 7ASM_F:73, 7ASM_A:2326 no longer at interface
D:101 [THR] 0:2350 [G] F:125 [ARG] A:2343 [U] ❌ 7ASM_A:2343 no longer at interface
D:53 [LYS] 0:2373 [U] F:69 [LYS] A:2366 [G] ❌ 7ASM_A:2366 no longer at interface
D:53 [LYS] 0:2374 [A] F:69 [LYS] A:2367 [A] ❌ 7ASM_A:2367 no longer at interface
D:55 [LYS] 0:2372 [A] F:71 [LYS] A:2365 [G] ❌ 7ASM_A:2365 no longer at interface
D:65 [GLU] 0:2373 [U] F:81 [GLU] A:2366 [G] ❌ 7ASM_F:81, 7ASM_A:2366 no longer at interface
D:156 [ARG] 0:2350 [G] F:160 [ALA] A:2343 [U] ❌ 7ASM_F:160, 7ASM_A:2343 no longer at interface
D:156 [ARG] 0:2351 [C] F:160 [ALA] A:2344 [C] ❌ 7ASM_F:160, 7ASM_A:2344 no longer at interface
D:133 [ASN] 0:2348 [C] F:157 [VAL] A:2341 [A] ❌ 7ASM_F:157 no longer at interface
D:133 [ASN] 0:2349 [G] F:157 [VAL] A:2342 [U] ❌ 7ASM_F:157 no longer at interface
D:27 [ILE] 0:2345 [A] F:41 [GLY] A:2338 [A] ❌ 7ASM_F:41 no longer at interface
D:129 [ASP] 0:2338 [G] F:153 [ASP] A:2331 [G] ❌ 7ASM_F:153 no longer at interface
D:129 [ASP] 0:2346 [C] F:153 [ASP] A:2339 [U] ❌ 7ASM_F:153 no longer at interface
D:129 [ASP] 0:2347 [C] F:153 [ASP] A:2340 [C] ❌ 7ASM_F:153 no longer at interface
D:103 [ASN] 0:2337 [G] F:127 [ASN] A:2330 [G] ❌ 7ASM_F:127 no longer at interface
D:103 [ASN] 0:2348 [C] F:127 [ASN] A:2341 [A] ❌ 7ASM_F:127 no longer at interface
D:103 [ASN] 0:2349 [G] F:127 [ASN] A:2342 [U] ❌ 7ASM_F:127 no longer at interface
D:20 [LYS] 0:2348 [C] F:33 [LYS] A:2341 [A] ❌ 7ASM_F:33 no longer at interface
D:20 [LYS] 0:2349 [G] F:33 [LYS] A:2342 [U] ❌ 7ASM_F:33 no longer at interface
D:130 [VAL] 0:2338 [G] F:154 [ILE] A:2331 [G] ❌ 7ASM_F:154 no longer at interface
D:28 [GLY] 0:2345 [A] F:42 [ASP] A:2338 [A] ❌ 1VQ8_D:28 no longer at interface
D:57 [THR] 0:2344 [G] F:74 [ILE] A:2337 [A] ❌ 1VQ8_D:57 no longer at interface
D:57 [THR] 0:2345 [A] F:74 [ILE] A:2338 [A] ❌ 1VQ8_D:57 no longer at interface
D:63 [ILE] 0:2345 [A] F:79 [LEU] A:2338 [A] ❌ 1VQ8_D:63 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 0.91 3.35 0.31 0.73 0.91 0.74 0.75 0.45 0.39 0.05 0.57


Other pairs involving 1VQ8_D_0 or 7ASM_F_A

Total number of entries: 19

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 7ASM_F_A 0.41 0.95 3.56 0.49 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7RYG_F_A 0.34 0.97 2.92 0.21 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7K00_f_a 0.34 0.96 3.21 0.11 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7O7Y_BJ_B5 0.34 0.89 4.56 0.14 Ribosomal protein L5 compare
6AZ3_D_2 7ASM_F_A 0.36 0.82 3.6 0.06 Ribosomal protein L5 compare
1VQ8_D_0 7O7Y_BJ_B5 0.34 0.93 3.98 0.05 Ribosomal protein L5 compare
1VQ8_D_0 4Y4O_1G_1A 0.75 0.93 3.28 0.21 Ribosomal protein L5 compare
1VQ8_D_0 7K00_f_a 0.35 0.9 3.47 0.08 Ribosomal protein L5 compare
1VQ8_D_0 6S0Z_F_A 0.67 0.93 3.72 0.29 Ribosomal protein L5 compare
1VQ8_D_0 7RYG_F_A 0.77 0.9 2.91 0.4 Ribosomal protein L5 compare
1VQ8_D_0 7ASM_F_A 0.45 0.91 3.35 0.31 Ribosomal protein L5 compare
1VQ8_D_0 5NS4_A_C 0.72 0.64 1.29 0.09 Ribosomal protein L5 compare
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1VQ8_D_0 6AZ3_D_2 0.50 0.8 2.77 0.21 Ribosomal protein L5 compare
1VQ8_D_0 5NS3_A_C 0.70 0.64 1.28 0.1 Ribosomal protein L5 compare
1MJI_A_C 1VQ8_D_0 0.69 0.56 1.45 0.06 Ribosomal protein L5 compare
1MJI_A_C 7ASM_F_A 0.39 0.7 1.49 0.17 Ribosomal protein L5 compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
6S0Z_F_A 7ASM_F_A 0.57 0.98 2.05 0.88 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare