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All interfaces > All interologs > Interface groups > group133 > 1VQ8_D_0 vs 7K00_f_a

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Common contacts -

1VQ8_D
1VQ8_0
7K00_f
7K00_a
Conserved?
D:54 [ALA] 0:2346 [C] f:69 [LYS] a:2312 [U] ✔
D:107 [GLY] 0:2338 [G] f:130 [MET] a:2304 [G] ✔
D:60 [GLU] 0:2344 [G] f:77 [PHE] a:2310 [C] ✔
D:60 [GLU] 0:2345 [A] f:77 [PHE] a:2311 [A] ✔
D:96 [SER] 0:2337 [G] f:121 [SER] a:2303 [G] ✔
D:96 [SER] 0:2338 [G] f:121 [SER] a:2304 [G] ✔
D:56 [ARG] 0:2332 [A] f:72 [LYS] a:2298 [A] ✔
D:56 [ARG] 0:2333 [G] f:72 [LYS] a:2299 [U] ✔
D:59 [GLY] 0:2344 [G] f:76 [GLY] a:2310 [C] ✔
D:58 [VAL] 0:2344 [G] f:74 [VAL] a:2310 [C] ✔
D:58 [VAL] 0:2345 [A] f:74 [VAL] a:2311 [A] ✔
D:99 [ASP] 0:2336 [G] f:124 [GLY] a:2302 [U] ✔
D:70 [GLY] 0:2346 [C] f:87 [CYS] a:2312 [U] ✔
D:104 [PHE] 0:2337 [G] f:127 [ASN] a:2303 [G] ✔
D:53 [LYS] 0:2346 [C] f:68 [THR] a:2312 [U] ✔
D:53 [LYS] 0:2347 [C] f:68 [THR] a:2313 [C] ✔
D:69 [ILE] 0:2346 [C] f:86 [GLY] a:2312 [U] ✔
D:106 [PHE] 0:2338 [G] f:129 [SER] a:2304 [G] ✔
D:55 [LYS] 0:2345 [A] f:70 [ALA] a:2311 [A] ✔
D:55 [LYS] 0:2346 [C] f:70 [ALA] a:2312 [U] ✔
D:129 [ASP] 0:2338 [G] f:154 [ILE] a:2304 [G] ✔
D:26 [GLY] 0:2346 [C] f:38 [MET] a:2312 [U] ✔
D:128 [LEU] 0:2338 [G] f:153 [ASP] a:2304 [G] ✔
D:98 [PHE] 0:2336 [G] f:123 [ASP] a:2302 [U] ✔
D:98 [PHE] 0:2337 [G] f:123 [ASP] a:2303 [G] ✔
D:20 [LYS] 0:2349 [G] f:32 [GLU] a:2315 [G] ✔
D:62 [ASP] 0:2345 [A] f:79 [ILE] a:2311 [A] ✔
D:97 [GLN] 0:2337 [G] f:122 [PHE] a:2303 [G] ✔
D:54 [ALA] 0:2345 [A] f:69 [LYS] a:2311 [A] ❌ 7K00_f_a
D:27 [ILE] 0:2345 [A] f:39 [GLY] a:2311 [A] ❌ 7K00_f_a
D:99 [ASP] 0:2337 [G] f:124 [GLY] a:2303 [G] ❌ 7K00_f_a
D:99 [ASP] 0:2348 [C] f:124 [GLY] a:2314 [A] ❌ 7K00_f_a
D:99 [ASP] 0:2349 [G] f:124 [GLY] a:2315 [G] ❌ 7K00_f_a
D:100 [ASP] 0:2336 [G] f:125 [ARG] a:2302 [U] ❌ 7K00_f_a
D:69 [ILE] 0:2345 [A] f:86 [GLY] a:2311 [A] ❌ 7K00_f_a
D:129 [ASP] 0:2346 [C] f:154 [ILE] a:2312 [U] ❌ 7K00_f_a
D:129 [ASP] 0:2347 [C] f:154 [ILE] a:2313 [C] ❌ 7K00_f_a
D:26 [GLY] 0:2345 [A] f:38 [MET] a:2311 [A] ❌ 7K00_f_a
D:20 [LYS] 0:2348 [C] f:32 [GLU] a:2314 [A] ❌ 7K00_f_a
D:130 [VAL] 0:2338 [G] f:155 [THR] a:2304 [G] ❌ 7K00_f_a
D:97 [GLN] 0:2338 [G] f:122 [PHE] a:2304 [G] ❌ 7K00_f_a
D:97 [GLN] 0:2336 [G] f:122 [PHE] a:2302 [U] ❌ 1VQ8_D_0
D:98 [PHE] 0:2349 [G] f:123 [ASP] a:2315 [G] ❌ 1VQ8_D_0
D:98 [PHE] 0:2348 [C] f:123 [ASP] a:2314 [A] ❌ 1VQ8_D_0
D:100 [ASP] 0:2349 [G] f:125 [ARG] a:2315 [G] ❌ 1VQ8_D_0
D:100 [ASP] 0:2350 [G] f:125 [ARG] a:2316 [G] ❌ 1VQ8_D_0
D:104 [PHE] 0:2348 [C] f:127 [ASN] a:2314 [A] ❌ 1VQ8_D_0
D:104 [PHE] 0:2349 [G] f:127 [ASN] a:2315 [G] ❌ 1VQ8_D_0
D:106 [PHE] 0:2337 [G] f:129 [SER] a:2303 [G] ❌ 1VQ8_D_0
D:128 [LEU] 0:2347 [C] f:153 [ASP] a:2313 [C] ❌ 1VQ8_D_0
D:128 [LEU] 0:2346 [C] f:153 [ASP] a:2312 [U] ❌ 1VQ8_D_0
D:130 [VAL] 0:2348 [C] f:155 [THR] a:2314 [A] ❌ 1VQ8_D_0
D:130 [VAL] 0:2347 [C] f:155 [THR] a:2313 [C] ❌ 1VQ8_D_0
D:130 [VAL] 0:2337 [G] f:155 [THR] a:2303 [G] ❌ 1VQ8_D_0
D:27 [ILE] 0:2346 [C] f:39 [GLY] a:2312 [U] ❌ 1VQ8_D_0
D:56 [ARG] 0:2346 [C] f:72 [LYS] a:2312 [U] ❌ 1VQ8_D_0
D:53 [LYS] 0:2373 [U] f:68 [THR] a:2339 [C] ❌ 7K00_a:2339 no longer at interface
D:53 [LYS] 0:2374 [A] f:68 [THR] a:2340 [A] ❌ 7K00_a:2340 no longer at interface
D:55 [LYS] 0:2372 [A] f:70 [ALA] a:2338 [C] ❌ 7K00_a:2338 no longer at interface
D:65 [GLU] 0:2373 [U] f:82 [GLY] a:2339 [C] ❌ 7K00_f:82, 7K00_a:2339 no longer at interface
D:56 [ARG] 0:2334 [C] f:72 [LYS] a:2300 [C] ❌ 1VQ8_0:2334 no longer at interface
D:24 [HIS] 0:2338 [G] f:36 [LEU] a:2304 [G] ❌ 7K00_f:36 no longer at interface
D:24 [HIS] 0:2346 [C] f:36 [LEU] a:2312 [U] ❌ 7K00_f:36 no longer at interface
D:24 [HIS] 0:2347 [C] f:36 [LEU] a:2313 [C] ❌ 7K00_f:36 no longer at interface
D:131 [THR] 0:2337 [G] f:156 [ILE] a:2303 [G] ❌ 7K00_f:156 no longer at interface
D:131 [THR] 0:2347 [C] f:156 [ILE] a:2313 [C] ❌ 7K00_f:156 no longer at interface
D:131 [THR] 0:2348 [C] f:156 [ILE] a:2314 [A] ❌ 7K00_f:156 no longer at interface
D:133 [ASN] 0:2348 [C] f:158 [THR] a:2314 [A] ❌ 7K00_f:158 no longer at interface
D:133 [ASN] 0:2349 [G] f:158 [THR] a:2315 [G] ❌ 7K00_f:158 no longer at interface
D:22 [VAL] 0:2347 [C] f:34 [ILE] a:2313 [C] ❌ 7K00_f:34 no longer at interface
D:22 [VAL] 0:2348 [C] f:34 [ILE] a:2314 [A] ❌ 7K00_f:34 no longer at interface
D:72 [LYS] 0:2347 [C] f:89 [VAL] a:2313 [C] ❌ 7K00_f:89 no longer at interface
D:72 [LYS] 0:2348 [C] f:89 [VAL] a:2314 [A] ❌ 7K00_f:89 no longer at interface
D:105 [SER] 0:2337 [G] f:128 [TYR] a:2303 [G] ❌ 7K00_f:128 no longer at interface
D:105 [SER] 0:2338 [G] f:128 [TYR] a:2304 [G] ❌ 7K00_f:128 no longer at interface
D:103 [ASN] 0:2337 [G] f:126 [GLY] a:2303 [G] ❌ 7K00_f:126 no longer at interface
D:103 [ASN] 0:2348 [C] f:126 [GLY] a:2314 [A] ❌ 7K00_f:126 no longer at interface
D:103 [ASN] 0:2349 [G] f:126 [GLY] a:2315 [G] ❌ 7K00_f:126 no longer at interface
D:52 [THR] 0:2346 [C] f:67 [ILE] a:2312 [U] ❌ 7K00_f:67 no longer at interface
D:52 [THR] 0:2347 [C] f:67 [ILE] a:2313 [C] ❌ 7K00_f:67 no longer at interface
D:95 [THR] 0:2337 [G] f:120 [LYS] a:2303 [G] ❌ 1VQ8_D:95 no longer at interface
D:95 [THR] 0:2338 [G] f:120 [LYS] a:2304 [G] ❌ 1VQ8_D:95 no longer at interface
D:132 [VAL] 0:2349 [G] f:157 [THR] a:2315 [G] ❌ 1VQ8_D:132 no longer at interface
D:132 [VAL] 0:2348 [C] f:157 [THR] a:2314 [A] ❌ 1VQ8_D:132 no longer at interface
D:21 [VAL] 0:2349 [G] f:33 [LYS] a:2315 [G] ❌ 1VQ8_D:21 no longer at interface
D:21 [VAL] 0:2348 [C] f:33 [LYS] a:2314 [A] ❌ 1VQ8_D:21 no longer at interface
D:23 [VAL] 0:2347 [C] f:35 [THR] a:2313 [C] ❌ 1VQ8_D:23 no longer at interface
D:23 [VAL] 0:2348 [C] f:35 [THR] a:2314 [A] ❌ 1VQ8_D:23 no longer at interface
D:25 [MET] 0:2347 [C] f:37 [ASN] a:2313 [C] ❌ 1VQ8_D:25 no longer at interface
D:25 [MET] 0:2346 [C] f:37 [ASN] a:2312 [U] ❌ 1VQ8_D:25 no longer at interface
D:25 [MET] 0:2338 [G] f:37 [ASN] a:2304 [G] ❌ 1VQ8_D:25 no longer at interface
D:68 [PRO] 0:2345 [A] f:85 [ILE] a:2311 [A] ❌ 1VQ8_D:68 no longer at interface
D:68 [PRO] 0:2346 [C] f:85 [ILE] a:2312 [U] ❌ 1VQ8_D:68 no longer at interface
D:71 [ALA] 0:2347 [C] f:88 [LYS] a:2313 [C] ❌ 1VQ8_D:71 no longer at interface
D:71 [ALA] 0:2348 [C] f:88 [LYS] a:2314 [A] ❌ 1VQ8_D:71 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 0.9 3.47 0.08 0.77 0.9 0.62 0.67 0.35 0.32 0.04 0.58


Other pairs involving 1VQ8_D_0 or 7K00_f_a

Total number of entries: 18

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 7K00_f_a 0.92 0.97 1.89 0.55 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7K00_f_a 0.34 0.96 3.21 0.11 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
6AZ3_D_2 7K00_f_a 0.79 0.83 2.15 0.24 Ribosomal protein L5 compare
7K00_f_a 7O7Y_BJ_B5 0.84 0.89 3.13 0.33 Ribosomal protein L5 compare
7K00_f_a 7RYG_F_A 0.83 0.99 3.23 0.76 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
1VQ8_D_0 7O7Y_BJ_B5 0.34 0.93 3.98 0.05 Ribosomal protein L5 compare
1VQ8_D_0 4Y4O_1G_1A 0.75 0.93 3.28 0.21 Ribosomal protein L5 compare
1VQ8_D_0 7K00_f_a 0.35 0.9 3.47 0.08 Ribosomal protein L5 compare
1VQ8_D_0 6S0Z_F_A 0.67 0.93 3.72 0.29 Ribosomal protein L5 compare
1VQ8_D_0 7RYG_F_A 0.77 0.9 2.91 0.4 Ribosomal protein L5 compare
1VQ8_D_0 7ASM_F_A 0.45 0.91 3.35 0.31 Ribosomal protein L5 compare
1VQ8_D_0 5NS4_A_C 0.72 0.64 1.29 0.09 Ribosomal protein L5 compare
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1VQ8_D_0 6AZ3_D_2 0.50 0.8 2.77 0.21 Ribosomal protein L5 compare
1VQ8_D_0 5NS3_A_C 0.70 0.64 1.28 0.1 Ribosomal protein L5 compare
1MJI_A_C 1VQ8_D_0 0.69 0.56 1.45 0.06 Ribosomal protein L5 compare
1YHQ_D_0 7K00_f_a 0.40 0.9 3.5 0.14 Ribosomal protein L5 compare
6S0Z_F_A 7K00_f_a 0.59 0.97 2.39 0.52 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare