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All interfaces > All interologs > Interface groups > group133 > 1VQ8_D_0 vs 7RYG_F_A

Interface analysis


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Common contacts -

1VQ8_D
1VQ8_0
7RYG_F
7RYG_A
Conserved?
D:24 [HIS] 0:2338 [G] F:37 [ASN] A:2300 [G] ✔
D:24 [HIS] 0:2346 [C] F:37 [ASN] A:2308 [U] ✔
D:24 [HIS] 0:2347 [C] F:37 [ASN] A:2309 [C] ✔
D:131 [THR] 0:2337 [G] F:155 [THR] A:2299 [G] ✔
D:131 [THR] 0:2347 [C] F:155 [THR] A:2309 [C] ✔
D:131 [THR] 0:2348 [C] F:155 [THR] A:2310 [A] ✔
D:133 [ASN] 0:2348 [C] F:157 [THR] A:2310 [A] ✔
D:133 [ASN] 0:2349 [G] F:157 [THR] A:2311 [C] ✔
D:54 [ALA] 0:2346 [C] F:70 [ALA] A:2308 [U] ✔
D:107 [GLY] 0:2338 [G] F:131 [GLY] A:2300 [G] ✔
D:60 [GLU] 0:2344 [G] F:77 [PHE] A:2306 [A] ✔
D:60 [GLU] 0:2345 [A] F:77 [PHE] A:2307 [A] ✔
D:96 [SER] 0:2337 [G] F:121 [SER] A:2299 [G] ✔
D:96 [SER] 0:2338 [G] F:121 [SER] A:2300 [G] ✔
D:59 [GLY] 0:2344 [G] F:76 [GLY] A:2306 [A] ✔
D:101 [THR] 0:2349 [G] F:125 [ARG] A:2311 [C] ✔
D:101 [THR] 0:2350 [G] F:125 [ARG] A:2312 [G] ✔
D:58 [VAL] 0:2344 [G] F:74 [ILE] A:2306 [A] ✔
D:58 [VAL] 0:2345 [A] F:74 [ILE] A:2307 [A] ✔
D:99 [ASP] 0:2336 [G] F:124 [GLY] A:2298 [U] ✔
D:70 [GLY] 0:2346 [C] F:86 [GLY] A:2308 [U] ✔
D:22 [VAL] 0:2347 [C] F:35 [THR] A:2309 [C] ✔
D:22 [VAL] 0:2348 [C] F:35 [THR] A:2310 [A] ✔
D:72 [LYS] 0:2347 [C] F:88 [LYS] A:2309 [C] ✔
D:72 [LYS] 0:2348 [C] F:88 [LYS] A:2310 [A] ✔
D:69 [ILE] 0:2345 [A] F:85 [ILE] A:2307 [A] ✔
D:69 [ILE] 0:2346 [C] F:85 [ILE] A:2308 [U] ✔
D:106 [PHE] 0:2338 [G] F:130 [MET] A:2300 [G] ✔
D:105 [SER] 0:2337 [G] F:129 [SER] A:2299 [G] ✔
D:105 [SER] 0:2338 [G] F:129 [SER] A:2300 [G] ✔
D:55 [LYS] 0:2346 [C] F:71 [ARG] A:2308 [U] ✔
D:129 [ASP] 0:2338 [G] F:153 [ASP] A:2300 [G] ✔
D:129 [ASP] 0:2347 [C] F:153 [ASP] A:2309 [C] ✔
D:103 [ASN] 0:2348 [C] F:127 [ASN] A:2310 [A] ✔
D:103 [ASN] 0:2349 [G] F:127 [ASN] A:2311 [C] ✔
D:26 [GLY] 0:2346 [C] F:39 [GLY] A:2308 [U] ✔
D:98 [PHE] 0:2336 [G] F:123 [ASP] A:2298 [U] ✔
D:98 [PHE] 0:2337 [G] F:123 [ASP] A:2299 [G] ✔
D:20 [LYS] 0:2348 [C] F:33 [LYS] A:2310 [A] ✔
D:20 [LYS] 0:2349 [G] F:33 [LYS] A:2311 [C] ✔
D:52 [THR] 0:2346 [C] F:68 [THR] A:2308 [U] ✔
D:52 [THR] 0:2347 [C] F:68 [THR] A:2309 [C] ✔
D:62 [ASP] 0:2345 [A] F:79 [ILE] A:2307 [A] ✔
D:97 [GLN] 0:2337 [G] F:122 [PHE] A:2299 [G] ✔
D:54 [ALA] 0:2345 [A] F:70 [ALA] A:2307 [A] ❌ 7RYG_F_A
D:99 [ASP] 0:2337 [G] F:124 [GLY] A:2299 [G] ❌ 7RYG_F_A
D:99 [ASP] 0:2348 [C] F:124 [GLY] A:2310 [A] ❌ 7RYG_F_A
D:99 [ASP] 0:2349 [G] F:124 [GLY] A:2311 [C] ❌ 7RYG_F_A
D:55 [LYS] 0:2345 [A] F:71 [ARG] A:2307 [A] ❌ 7RYG_F_A
D:129 [ASP] 0:2346 [C] F:153 [ASP] A:2308 [U] ❌ 7RYG_F_A
D:103 [ASN] 0:2337 [G] F:127 [ASN] A:2299 [G] ❌ 7RYG_F_A
D:26 [GLY] 0:2345 [A] F:39 [GLY] A:2307 [A] ❌ 7RYG_F_A
D:128 [LEU] 0:2338 [G] F:152 [MET] A:2300 [G] ❌ 7RYG_F_A
D:97 [GLN] 0:2338 [G] F:122 [PHE] A:2300 [G] ❌ 7RYG_F_A
D:97 [GLN] 0:2336 [G] F:122 [PHE] A:2298 [U] ❌ 1VQ8_D_0
D:98 [PHE] 0:2349 [G] F:123 [ASP] A:2311 [C] ❌ 1VQ8_D_0
D:98 [PHE] 0:2348 [C] F:123 [ASP] A:2310 [A] ❌ 1VQ8_D_0
D:129 [ASP] 0:2337 [G] F:153 [ASP] A:2299 [G] ❌ 1VQ8_D_0
D:55 [LYS] 0:2332 [A] F:71 [ARG] A:2294 [A] ❌ 1VQ8_D_0
D:55 [LYS] 0:2347 [C] F:71 [ARG] A:2309 [C] ❌ 1VQ8_D_0
D:62 [ASP] 0:2346 [C] F:79 [ILE] A:2308 [U] ❌ 1VQ8_D_0
D:56 [ARG] 0:2333 [G] F:72 [LYS] A:2295 [G] ❌ 7RYG_F:72, 7RYG_A:2295 no longer at interface
D:53 [LYS] 0:2373 [U] F:69 [LEU] A:2335 [G] ❌ 7RYG_F:69, 7RYG_A:2335 no longer at interface
D:53 [LYS] 0:2374 [A] F:69 [LEU] A:2336 [C] ❌ 7RYG_F:69, 7RYG_A:2336 no longer at interface
D:55 [LYS] 0:2372 [A] F:71 [ARG] A:2334 [C] ❌ 7RYG_A:2334 no longer at interface
D:65 [GLU] 0:2373 [U] F:81 [ASP] A:2335 [G] ❌ 7RYG_F:81, 7RYG_A:2335 no longer at interface
D:56 [ARG] 0:2332 [A] F:72 [LYS] A:2294 [A] ❌ 7RYG_F:72 no longer at interface
D:27 [ILE] 0:2345 [A] F:40 [VAL] A:2307 [A] ❌ 7RYG_F:40 no longer at interface
D:104 [PHE] 0:2337 [G] F:128 [TYR] A:2299 [G] ❌ 7RYG_F:128 no longer at interface
D:53 [LYS] 0:2346 [C] F:69 [LEU] A:2308 [U] ❌ 7RYG_F:69 no longer at interface
D:53 [LYS] 0:2347 [C] F:69 [LEU] A:2309 [C] ❌ 7RYG_F:69 no longer at interface
D:130 [VAL] 0:2338 [G] F:154 [ILE] A:2300 [G] ❌ 7RYG_F:154 no longer at interface
D:25 [MET] 0:2346 [C] F:38 [MET] A:2308 [U] ❌ 1VQ8_D:25 no longer at interface
D:28 [GLY] 0:2345 [A] F:41 [GLY] A:2307 [A] ❌ 1VQ8_D:28 no longer at interface
D:71 [ALA] 0:2346 [C] F:87 [CYS] A:2308 [U] ❌ 1VQ8_D:71 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 0.9 2.91 0.40 0.75 0.92 0.79 0.73 0.77 0.77 0.30 0.45


Other pairs involving 1VQ8_D_0 or 7RYG_F_A

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 7RYG_F_A 0.78 0.96 3.49 0.53 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7RYG_F_A 0.34 0.97 2.92 0.21 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
6AZ3_D_2 7RYG_F_A 0.53 0.81 3.21 0.21 Ribosomal protein L5 compare
7K00_f_a 7RYG_F_A 0.83 0.99 3.23 0.76 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
1VQ8_D_0 7O7Y_BJ_B5 0.34 0.93 3.98 0.05 Ribosomal protein L5 compare
1VQ8_D_0 4Y4O_1G_1A 0.75 0.93 3.28 0.21 Ribosomal protein L5 compare
1VQ8_D_0 7K00_f_a 0.35 0.9 3.47 0.08 Ribosomal protein L5 compare
1VQ8_D_0 6S0Z_F_A 0.67 0.93 3.72 0.29 Ribosomal protein L5 compare
1VQ8_D_0 7RYG_F_A 0.77 0.9 2.91 0.4 Ribosomal protein L5 compare
1VQ8_D_0 7ASM_F_A 0.45 0.91 3.35 0.31 Ribosomal protein L5 compare
1VQ8_D_0 5NS4_A_C 0.72 0.64 1.29 0.09 Ribosomal protein L5 compare
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1VQ8_D_0 6AZ3_D_2 0.50 0.8 2.77 0.21 Ribosomal protein L5 compare
1VQ8_D_0 5NS3_A_C 0.70 0.64 1.28 0.1 Ribosomal protein L5 compare
1MJI_A_C 1VQ8_D_0 0.69 0.56 1.45 0.06 Ribosomal protein L5 compare
1YHQ_D_0 7RYG_F_A 0.71 0.9 2.81 0.38 Ribosomal protein L5 compare
6S0Z_F_A 7RYG_F_A 0.59 0.97 3.23 0.48 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare