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All interfaces > All interologs > Interface groups > group133 > 1YHQ_D_0

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_D
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
D:20 [LYS] 0:2348 [C] 2.93 0:2336 [G] 96.6
D:20 [LYS] 0:2349 [G] 2.66 0:2335 [C] 96.6
D:22 [VAL] 0:2347 [C] 3.12 0:2337 [G] 80.8
D:22 [VAL] 0:2348 [C] 3.67 0:2336 [G] 80.8
D:24 [HIS] 0:2338 [G] 3.8 0:2346 [C] 85.4
D:24 [HIS] 0:2346 [C] 2.82 0:2338 [G] sugar:SC 85.4
D:24 [HIS] 0:2347 [C] 3.26 0:2337 [G] 85.4
D:26 [GLY] 0:2345 [A] 4.62 83.6
D:26 [GLY] 0:2346 [C] 4.12 0:2338 [G] 83.6
D:27 [ILE] 0:2345 [A] 4.15 63.6
D:52 [THR] 0:2346 [C] 2.71 0:2338 [G] 84.9
D:52 [THR] 0:2347 [C] 3.53 0:2337 [G] 84.9
D:53 [LYS] 0:2346 [C] 3.64 0:2338 [G] 0.0
D:53 [LYS] 0:2347 [C] 4.84 0:2337 [G] 0.0
D:53 [LYS] 0:2373 [U] 4.37 0:2327 [A] 0.0
D:53 [LYS] 0:2374 [G] 3.87 0:2326 [C] 0.0
D:54 [ALA] 0:2345 [A] 4.32 86.8
D:54 [ALA] 0:2346 [C] 3.65 0:2338 [G] 86.8
D:55 [LYS] 0:2332 [A] 4.7 0:2352 [G] 75.1
D:55 [LYS] 0:2345 [A] 4.5 75.1
D:55 [LYS] 0:2346 [C] 3.14 0:2338 [G] 75.1
D:56 [ARG] 0:2332 [A] 3.79 0:2352 [G] 56.5
D:56 [ARG] 0:2333 [G] 2.69 0:2351 [C] 56.5
D:58 [VAL] 0:2344 [G] 3.32 67.6
D:58 [VAL] 0:2345 [A] 4.87 67.6
D:60 [GLU] 0:2344 [G] 3.24 base:SC 55.9
D:60 [GLU] 0:2345 [A] 3.15 55.9
D:62 [ASP] 0:2345 [A] 3.29 67.5
D:65 [GLU] 0:2373 [U] 4.06 0:2327 [A] 70.0
D:69 [ILE] 0:2345 [A] 4.07 85.2
D:69 [ILE] 0:2346 [C] 4.35 0:2338 [G] 85.2
D:70 [GLY] 0:2346 [C] 4.72 0:2338 [G] 87.5
D:72 [LYS] 0:2347 [C] 3.54 0:2337 [G] 62.6
D:72 [LYS] 0:2348 [C] 2.6 0:2336 [G] 62.6
D:96 [SER] 0:2337 [G] 3.33 0:2347 [C] 43.5
D:96 [SER] 0:2338 [G] 4.39 0:2346 [C] 43.5
D:97 [GLN] 0:2337 [G] 3.11 0:2347 [C] 66.2
D:97 [GLN] 0:2338 [G] 3.27 0:2346 [C] 66.2
D:98 [PHE] 0:2336 [G] 4.01 0:2348 [C] 75.9
D:98 [PHE] 0:2337 [G] 3.61 0:2347 [C] 75.9
D:99 [ASP] 0:2336 [G] 2.8 0:2348 [C] base:SC 93.2
D:99 [ASP] 0:2337 [G] 3.79 0:2347 [C] 93.2
D:99 [ASP] 0:2348 [C] 4.93 0:2336 [G] 93.2
D:99 [ASP] 0:2349 [G] 3.85 0:2335 [C] 93.2
D:100 [ASP] 0:2336 [G] 2.68 0:2348 [C] sugar:SC 7.7
D:101 [THR] 0:2349 [G] 2.6 0:2335 [C] sugar:SC 0.3
D:101 [THR] 0:2350 [G] 3.72 0:2334 [C] 0.3
D:103 [ASN] 0:2348 [C] 4.15 0:2336 [G] 93.4
D:103 [ASN] 0:2349 [G] 3.49 0:2335 [C] 93.4
D:104 [PHE] 0:2337 [G] 4.0 0:2347 [C] 41.2
D:105 [SER] 0:2337 [G] 3.1 0:2347 [C] sugar:BB 80.5
D:105 [SER] 0:2338 [G] 3.1 0:2346 [C] sugar:SC 80.5
D:106 [PHE] 0:2338 [G] 3.35 0:2346 [C] 74.6
D:107 [GLY] 0:2338 [G] 2.42 0:2346 [C] 96.6
D:129 [ASP] 0:2338 [G] 2.67 0:2346 [C] sugar:SC base/AA stacks 71.9
D:129 [ASP] 0:2346 [C] 4.7 0:2338 [G] 71.9
D:130 [VAL] 0:2338 [G] 4.47 0:2346 [C] 84.8
D:131 [THR] 0:2337 [G] 3.29 0:2347 [C] base:SC 57.0
D:131 [THR] 0:2347 [C] 4.37 0:2337 [G] 57.0
D:131 [THR] 0:2348 [C] 3.81 0:2336 [G] 57.0
D:133 [ASN] 0:2348 [C] 4.18 0:2336 [G] 67.7
D:133 [ASN] 0:2349 [G] 3.44 0:2335 [C] 67.7
D:139 [TYR] 0:2349 [G] 3.88 0:2335 [C] 27.1
D:139 [TYR] 0:2350 [G] 3.19 0:2334 [C] 27.1
D:143 [LYS] 0:2349 [G] 4.22 0:2335 [C] 42.7
D:145 [ASP] 0:2329 [C] 4.77 0:2371 [G] 57.4
D:145 [ASP] 0:2368 [A] 4.25 57.4
D:150 [SER] 0:2351 [C] 3.53 0:2333 [G] 53.8
D:156 [ARG] 0:2350 [G] 3.55 0:2334 [C] 64.2
D:156 [ARG] 0:2351 [C] 3.01 0:2333 [G] 64.2

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group133 1YHQ_D_0 D: 50s ribosomal protein l5p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14124 Ribosomal protein L5 Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1YHQ_D_0 7RYG_F_A 0.71 0.9 2.81 0.38 Ribosomal protein L5 compare
1YHQ_D_0 5NS4_A_C 0.72 0.65 1.31 0.09 Ribosomal protein L5 compare
1YHQ_D_0 7O7Y_BJ_B5 0.31 0.93 3.99 0.05 Ribosomal protein L5 compare
1YHQ_D_0 6AZ3_D_2 0.66 0.81 2.69 0.24 Ribosomal protein L5 compare
1YHQ_D_0 6S0Z_F_A 0.68 0.93 3.49 0.29 Ribosomal protein L5 compare
1YHQ_D_0 5NS3_A_C 0.68 0.64 1.27 0.1 Ribosomal protein L5 compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
1YHQ_D_0 7K00_f_a 0.40 0.9 3.5 0.14 Ribosomal protein L5 compare