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All interfaces > All interologs > Interface groups > group133 > 1YHQ_D_0 vs 4Y4O_1G_1A

Interface analysis


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Common contacts -

1YHQ_D
1YHQ_0
4Y4O_1G
4Y4O_1A
Conserved?
D:24 [HIS] 0:2338 [G] 1G:40 [ASN] 1A:2316 [G] ✔
D:24 [HIS] 0:2346 [C] 1G:40 [ASN] 1A:2324 [U] ✔
D:24 [HIS] 0:2347 [C] 1G:40 [ASN] 1A:2325 [C] ✔
D:131 [THR] 0:2347 [C] 1G:158 [ALA] 1A:2325 [C] ✔
D:131 [THR] 0:2348 [C] 1G:158 [ALA] 1A:2326 [C] ✔
D:133 [ASN] 0:2348 [C] 1G:160 [VAL] 1A:2326 [C] ✔
D:133 [ASN] 0:2349 [G] 1G:160 [VAL] 1A:2327 [G] ✔
D:54 [ALA] 0:2346 [C] 1G:72 [ARG] 1A:2324 [U] ✔
D:107 [GLY] 0:2338 [G] 1G:134 [GLY] 1A:2316 [G] ✔
D:60 [GLU] 0:2344 [G] 1G:80 [PHE] 1A:2322 [A] ✔
D:60 [GLU] 0:2345 [A] 1G:80 [PHE] 1A:2323 [A] ✔
D:96 [SER] 0:2337 [G] 1G:123 [ASN] 1A:2315 [G] ✔
D:96 [SER] 0:2338 [G] 1G:123 [ASN] 1A:2316 [G] ✔
D:27 [ILE] 0:2345 [A] 1G:43 [LEU] 1A:2323 [A] ✔
D:101 [THR] 0:2349 [G] 1G:128 [ARG] 1A:2327 [G] ✔
D:101 [THR] 0:2350 [G] 1G:128 [ARG] 1A:2328 [C] ✔
D:58 [VAL] 0:2344 [G] 1G:77 [ILE] 1A:2322 [A] ✔
D:58 [VAL] 0:2345 [A] 1G:77 [ILE] 1A:2323 [A] ✔
D:99 [ASP] 0:2336 [G] 1G:126 [ASP] 1A:2314 [G] ✔
D:99 [ASP] 0:2337 [G] 1G:126 [ASP] 1A:2315 [G] ✔
D:99 [ASP] 0:2348 [C] 1G:126 [ASP] 1A:2326 [C] ✔
D:99 [ASP] 0:2349 [G] 1G:126 [ASP] 1A:2327 [G] ✔
D:70 [GLY] 0:2346 [C] 1G:90 [LEU] 1A:2324 [U] ✔
D:22 [VAL] 0:2347 [C] 1G:38 [VAL] 1A:2325 [C] ✔
D:22 [VAL] 0:2348 [C] 1G:38 [VAL] 1A:2326 [C] ✔
D:100 [ASP] 0:2336 [G] 1G:127 [GLY] 1A:2314 [G] ✔
D:104 [PHE] 0:2337 [G] 1G:131 [TYR] 1A:2315 [G] ✔
D:53 [LYS] 0:2346 [C] 1G:71 [THR] 1A:2324 [U] ✔
D:53 [LYS] 0:2347 [C] 1G:71 [THR] 1A:2325 [C] ✔
D:69 [ILE] 0:2346 [C] 1G:89 [GLY] 1A:2324 [U] ✔
D:106 [PHE] 0:2338 [G] 1G:133 [LEU] 1A:2316 [G] ✔
D:105 [SER] 0:2337 [G] 1G:132 [ASN] 1A:2315 [G] ✔
D:105 [SER] 0:2338 [G] 1G:132 [ASN] 1A:2316 [G] ✔
D:55 [LYS] 0:2345 [A] 1G:73 [ALA] 1A:2323 [A] ✔
D:55 [LYS] 0:2346 [C] 1G:73 [ALA] 1A:2324 [U] ✔
D:129 [ASP] 0:2338 [G] 1G:156 [ASP] 1A:2316 [G] ✔
D:129 [ASP] 0:2346 [C] 1G:156 [ASP] 1A:2324 [U] ✔
D:103 [ASN] 0:2348 [C] 1G:130 [ASN] 1A:2326 [C] ✔
D:103 [ASN] 0:2349 [G] 1G:130 [ASN] 1A:2327 [G] ✔
D:26 [GLY] 0:2345 [A] 1G:42 [GLY] 1A:2323 [A] ✔
D:26 [GLY] 0:2346 [C] 1G:42 [GLY] 1A:2324 [U] ✔
D:98 [PHE] 0:2336 [G] 1G:125 [PHE] 1A:2314 [G] ✔
D:98 [PHE] 0:2337 [G] 1G:125 [PHE] 1A:2315 [G] ✔
D:20 [LYS] 0:2348 [C] 1G:36 [LYS] 1A:2326 [C] ✔
D:20 [LYS] 0:2349 [G] 1G:36 [LYS] 1A:2327 [G] ✔
D:130 [VAL] 0:2338 [G] 1G:157 [ILE] 1A:2316 [G] ✔
D:62 [ASP] 0:2345 [A] 1G:82 [LEU] 1A:2323 [A] ✔
D:97 [GLN] 0:2337 [G] 1G:124 [SER] 1A:2315 [G] ✔
D:97 [GLN] 0:2338 [G] 1G:124 [SER] 1A:2316 [G] ✔
D:131 [THR] 0:2337 [G] 1G:158 [ALA] 1A:2315 [G] ❌ 4Y4O_1G_1A
D:54 [ALA] 0:2345 [A] 1G:72 [ARG] 1A:2323 [A] ❌ 4Y4O_1G_1A
D:69 [ILE] 0:2345 [A] 1G:89 [GLY] 1A:2323 [A] ❌ 4Y4O_1G_1A
D:103 [ASN] 0:2337 [G] 1G:130 [ASN] 1A:2315 [G] ❌ 1YHQ_D_0
D:105 [SER] 0:2336 [G] 1G:132 [ASN] 1A:2314 [G] ❌ 1YHQ_D_0
D:105 [SER] 0:2348 [C] 1G:132 [ASN] 1A:2326 [C] ❌ 1YHQ_D_0
D:105 [SER] 0:2347 [C] 1G:132 [ASN] 1A:2325 [C] ❌ 1YHQ_D_0
D:129 [ASP] 0:2347 [C] 1G:156 [ASP] 1A:2325 [C] ❌ 1YHQ_D_0
D:56 [ARG] 0:2344 [G] 1G:75 [LYS] 1A:2322 [A] ❌ 1YHQ_D_0
D:56 [ARG] 0:2345 [A] 1G:75 [LYS] 1A:2323 [A] ❌ 1YHQ_D_0
D:56 [ARG] 0:2346 [C] 1G:75 [LYS] 1A:2324 [U] ❌ 1YHQ_D_0
D:56 [ARG] 0:2332 [A] 1G:75 [LYS] 1A:2310 [A] ❌ 4Y4O_1A:2310 no longer at interface
D:56 [ARG] 0:2333 [G] 1G:75 [LYS] 1A:2311 [G] ❌ 4Y4O_1A:2311 no longer at interface
D:53 [LYS] 0:2373 [U] 1G:71 [THR] 1A:2351 [G] ❌ 4Y4O_1A:2351 no longer at interface
D:53 [LYS] 0:2374 [G] 1G:71 [THR] 1A:2352 [G] ❌ 4Y4O_1A:2352 no longer at interface
D:55 [LYS] 0:2332 [A] 1G:73 [ALA] 1A:2310 [A] ❌ 4Y4O_1A:2310 no longer at interface
D:65 [GLU] 0:2373 [U] 1G:85 [GLY] 1A:2351 [G] ❌ 4Y4O_1G:85, 4Y4O_1A:2351 no longer at interface
D:156 [ARG] 0:2351 [C] 1G:163 [ALA] 1A:2329 [C] ❌ 4Y4O_1G:163, 4Y4O_1A:2329 no longer at interface
D:72 [LYS] 0:2347 [C] 1G:92 [VAL] 1A:2325 [C] ❌ 4Y4O_1G:92 no longer at interface
D:72 [LYS] 0:2348 [C] 1G:92 [VAL] 1A:2326 [C] ❌ 4Y4O_1G:92 no longer at interface
D:52 [THR] 0:2346 [C] 1G:70 [VAL] 1A:2324 [U] ❌ 4Y4O_1G:70 no longer at interface
D:52 [THR] 0:2347 [C] 1G:70 [VAL] 1A:2325 [C] ❌ 4Y4O_1G:70 no longer at interface
D:156 [ARG] 0:2350 [G] 1G:163 [ALA] 1A:2328 [C] ❌ 4Y4O_1G:163 no longer at interface
D:94 [ALA] 0:2338 [G] 1G:121 [ASN] 1A:2316 [G] ❌ 1YHQ_D:94 no longer at interface
D:128 [LEU] 0:2338 [G] 1G:155 [MET] 1A:2316 [G] ❌ 1YHQ_D:128 no longer at interface
D:23 [VAL] 0:2347 [C] 1G:39 [ILE] 1A:2325 [C] ❌ 1YHQ_D:23 no longer at interface
D:25 [MET] 0:2346 [C] 1G:41 [GLN] 1A:2324 [U] ❌ 1YHQ_D:25 no longer at interface
D:28 [GLY] 0:2345 [A] 1G:44 [GLY] 1A:2323 [A] ❌ 1YHQ_D:28 no longer at interface
D:59 [GLY] 0:2344 [G] 1G:79 [ASN] 1A:2322 [A] ❌ 1YHQ_D:59 no longer at interface
D:68 [PRO] 0:2346 [C] 1G:88 [ILE] 1A:2324 [U] ❌ 1YHQ_D:68 no longer at interface
D:68 [PRO] 0:2345 [A] 1G:88 [ILE] 1A:2323 [A] ❌ 1YHQ_D:68 no longer at interface
D:71 [ALA] 0:2348 [C] 1G:91 [ARG] 1A:2326 [C] ❌ 1YHQ_D:71 no longer at interface
D:71 [ALA] 0:2347 [C] 1G:91 [ARG] 1A:2325 [C] ❌ 1YHQ_D:71 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 0.93 3.03 0.22 0.78 0.93 0.78 0.67 0.73 0.58 0.26 0.67


Other pairs involving 1YHQ_D_0 or 4Y4O_1G_1A

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1VQ8_D_0 4Y4O_1G_1A 0.75 0.93 3.28 0.21 Ribosomal protein L5 compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare
1YHQ_D_0 5NS3_A_C 0.68 0.64 1.27 0.1 Ribosomal protein L5 compare
1YHQ_D_0 5NS4_A_C 0.72 0.65 1.31 0.09 Ribosomal protein L5 compare
4Y4O_1G_1A 6AZ3_D_2 0.74 0.83 2.7 0.27 Ribosomal protein L5 compare
1YHQ_D_0 6AZ3_D_2 0.66 0.81 2.69 0.24 Ribosomal protein L5 compare
4Y4O_1G_1A 6S0Z_F_A 0.67 0.96 1.7 0.57 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
1YHQ_D_0 6S0Z_F_A 0.68 0.93 3.49 0.29 Ribosomal protein L5 compare
4Y4O_1G_1A 7ASM_F_A 0.41 0.95 3.56 0.49 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
4Y4O_1G_1A 7K00_f_a 0.92 0.97 1.89 0.55 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
1YHQ_D_0 7K00_f_a 0.40 0.9 3.5 0.14 Ribosomal protein L5 compare
4Y4O_1G_1A 7O7Y_BJ_B5 0.48 0.89 4.25 0.09 Ribosomal protein L5 compare
1YHQ_D_0 7O7Y_BJ_B5 0.31 0.93 3.99 0.05 Ribosomal protein L5 compare
4Y4O_1G_1A 7RYG_F_A 0.78 0.96 3.49 0.53 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
1YHQ_D_0 7RYG_F_A 0.71 0.9 2.81 0.38 Ribosomal protein L5 compare