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All interfaces > All interologs > Interface groups > group133 > 1YHQ_D_0 vs 5NS3_A_C

Interface analysis


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Common contacts -

1YHQ_D
1YHQ_0
5NS3_A
5NS3_C
Conserved?
D:24 [HIS] 0:2346 [C] A:40 [ASN] C:27 [G] ✔
D:24 [HIS] 0:2347 [C] A:40 [ASN] C:28 [C] ✔
D:131 [THR] 0:2348 [C] A:158 [ALA] C:29 [A] ✔
D:133 [ASN] 0:2348 [C] A:160 [VAL] C:29 [A] ✔
D:133 [ASN] 0:2349 [G] A:160 [VAL] C:30 [C] ✔
D:101 [THR] 0:2349 [G] A:128 [ARG] C:30 [C] ✔
D:101 [THR] 0:2350 [G] A:128 [ARG] C:31 [C] ✔
D:99 [ASP] 0:2348 [C] A:126 [ASP] C:29 [A] ✔
D:99 [ASP] 0:2349 [G] A:126 [ASP] C:30 [C] ✔
D:22 [VAL] 0:2347 [C] A:38 [VAL] C:28 [C] ✔
D:22 [VAL] 0:2348 [C] A:38 [VAL] C:29 [A] ✔
D:72 [LYS] 0:2347 [C] A:91 [ARG] C:28 [C] ✔
D:72 [LYS] 0:2348 [C] A:91 [ARG] C:29 [A] ✔
D:69 [ILE] 0:2346 [C] A:88 [ILE] C:27 [G] ✔
D:129 [ASP] 0:2346 [C] A:156 [ASP] C:27 [G] ✔
D:103 [ASN] 0:2348 [C] A:130 [ASN] C:29 [A] ✔
D:103 [ASN] 0:2349 [G] A:130 [ASN] C:30 [C] ✔
D:20 [LYS] 0:2348 [C] A:36 [LYS] C:29 [A] ✔
D:20 [LYS] 0:2349 [G] A:36 [LYS] C:30 [C] ✔
D:52 [THR] 0:2347 [C] A:71 [THR] C:28 [C] ✔
D:131 [THR] 0:2347 [C] A:158 [ALA] C:28 [C] ❌ 5NS3_A_C
D:52 [THR] 0:2346 [C] A:71 [THR] C:27 [G] ❌ 5NS3_A_C
D:101 [THR] 0:2351 [C] A:128 [ARG] C:32 [U] ❌ 1YHQ_D_0
D:105 [SER] 0:2348 [C] A:132 [ASN] C:29 [A] ❌ 1YHQ_D_0
D:129 [ASP] 0:2347 [C] A:156 [ASP] C:28 [C] ❌ 1YHQ_D_0
D:54 [ALA] 0:2345 [A] A:73 [ALA] C:26 [C] ❌ 5NS3_A:73, 5NS3_C:26 no longer at interface
D:27 [ILE] 0:2345 [A] A:43 [LEU] C:26 [C] ❌ 5NS3_A:43, 5NS3_C:26 no longer at interface
D:53 [LYS] 0:2373 [U] A:72 [ARG] C:38 [C] ❌ 5NS3_A:72, 5NS3_C:38 no longer at interface
D:69 [ILE] 0:2345 [A] A:88 [ILE] C:26 [C] ❌ 5NS3_C:26 no longer at interface
D:26 [GLY] 0:2345 [A] A:42 [GLY] C:26 [C] ❌ 5NS3_A:42, 5NS3_C:26 no longer at interface
D:54 [ALA] 0:2346 [C] A:73 [ALA] C:27 [G] ❌ 5NS3_A:73 no longer at interface
D:70 [GLY] 0:2346 [C] A:89 [GLY] C:27 [G] ❌ 5NS3_A:89 no longer at interface
D:53 [LYS] 0:2346 [C] A:72 [ARG] C:27 [G] ❌ 5NS3_A:72 no longer at interface
D:53 [LYS] 0:2347 [C] A:72 [ARG] C:28 [C] ❌ 5NS3_A:72 no longer at interface
D:26 [GLY] 0:2346 [C] A:42 [GLY] C:27 [G] ❌ 5NS3_A:42 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 0.64 1.27 0.10 0.71 0.23 0.86 0.6 0.68 0.54 0.17 0.67


Other pairs involving 1YHQ_D_0 or 5NS3_A_C

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare
1VQ8_D_0 5NS3_A_C 0.70 0.64 1.28 0.1 Ribosomal protein L5 compare
1MJI_A_C 5NS3_A_C 0.98 0.98 0.47 0.8 Ribosomal protein L5 compare
1YHQ_D_0 5NS3_A_C 0.68 0.64 1.27 0.1 Ribosomal protein L5 compare
5NS3_A_C 5NS4_A_C 0.99 0.97 0.23 0.9 Ribosomal protein L5 compare
1YHQ_D_0 5NS4_A_C 0.72 0.65 1.31 0.09 Ribosomal protein L5 compare
5NS3_A_C 6AZ3_D_2 0.54 0.65 1.87 0.2 Ribosomal protein L5 compare
1YHQ_D_0 6AZ3_D_2 0.66 0.81 2.69 0.24 Ribosomal protein L5 compare
1YHQ_D_0 6S0Z_F_A 0.68 0.93 3.49 0.29 Ribosomal protein L5 compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
1YHQ_D_0 7K00_f_a 0.40 0.9 3.5 0.14 Ribosomal protein L5 compare
5NS3_A_C 7O7Y_BJ_B5 0.60 0.66 1.88 0.3 Ribosomal protein L5 compare
1YHQ_D_0 7O7Y_BJ_B5 0.31 0.93 3.99 0.05 Ribosomal protein L5 compare
1YHQ_D_0 7RYG_F_A 0.71 0.9 2.81 0.38 Ribosomal protein L5 compare