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All interfaces > All interologs > Interface groups > group133 > 1YHQ_D_0 vs 6AZ3_D_2

Interface analysis


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Common contacts -

1YHQ_D
1YHQ_0
6AZ3_D
6AZ3_2
Conserved?
D:24 [HIS] 0:2338 [G] D:22 [ASN] 2:1101 [A] ✔
D:24 [HIS] 0:2346 [C] D:22 [ASN] 2:1109 [U] ✔
D:24 [HIS] 0:2347 [C] D:22 [ASN] 2:1110 [C] ✔
D:131 [THR] 0:2337 [G] D:130 [TYR] 2:1100 [G] ✔
D:131 [THR] 0:2348 [C] D:130 [TYR] 2:1111 [U] ✔
D:133 [ASN] 0:2348 [C] D:132 [VAL] 2:1111 [U] ✔
D:133 [ASN] 0:2349 [G] D:132 [VAL] 2:1112 [C] ✔
D:54 [ALA] 0:2346 [C] D:51 [ARG] 2:1109 [U] ✔
D:107 [GLY] 0:2338 [G] D:107 [GLY] 2:1101 [A] ✔
D:60 [GLU] 0:2344 [G] D:59 [PHE] 2:1107 [A] ✔
D:60 [GLU] 0:2345 [A] D:59 [PHE] 2:1108 [A] ✔
D:96 [SER] 0:2337 [G] D:96 [TYR] 2:1100 [G] ✔
D:96 [SER] 0:2338 [G] D:96 [TYR] 2:1101 [A] ✔
D:101 [THR] 0:2349 [G] D:101 [THR] 2:1112 [C] ✔
D:101 [THR] 0:2350 [G] D:101 [THR] 2:1113 [A] ✔
D:150 [SER] 0:2351 [C] D:149 [ARG] 2:1114 [C] ✔
D:99 [ASP] 0:2336 [G] D:99 [SER] 2:1099 [G] ✔
D:99 [ASP] 0:2337 [G] D:99 [SER] 2:1100 [G] ✔
D:22 [VAL] 0:2347 [C] D:20 [CYS] 2:1110 [C] ✔
D:22 [VAL] 0:2348 [C] D:20 [CYS] 2:1111 [U] ✔
D:145 [ASP] 0:2329 [C] D:144 [LYS] 2:1092 [C] ✔
D:145 [ASP] 0:2368 [A] D:144 [LYS] 2:1131 [A] ✔
D:100 [ASP] 0:2336 [G] D:100 [ASP] 2:1099 [G] ✔
D:104 [PHE] 0:2337 [G] D:104 [PHE] 2:1100 [G] ✔
D:53 [LYS] 0:2346 [C] D:50 [SER] 2:1109 [U] ✔
D:53 [LYS] 0:2347 [C] D:50 [SER] 2:1110 [C] ✔
D:69 [ILE] 0:2346 [C] D:68 [ALA] 2:1109 [U] ✔
D:106 [PHE] 0:2338 [G] D:106 [PHE] 2:1101 [A] ✔
D:105 [SER] 0:2337 [G] D:105 [GLY] 2:1100 [G] ✔
D:105 [SER] 0:2338 [G] D:105 [GLY] 2:1101 [A] ✔
D:55 [LYS] 0:2346 [C] D:52 [ALA] 2:1109 [U] ✔
D:129 [ASP] 0:2338 [G] D:128 [ASP] 2:1101 [A] ✔
D:103 [ASN] 0:2348 [C] D:103 [SER] 2:1111 [U] ✔
D:26 [GLY] 0:2345 [A] D:24 [CYS] 2:1108 [A] ✔
D:26 [GLY] 0:2346 [C] D:24 [CYS] 2:1109 [U] ✔
D:98 [PHE] 0:2337 [G] D:98 [PHE] 2:1100 [G] ✔
D:20 [LYS] 0:2348 [C] D:18 [LYS] 2:1111 [U] ✔
D:20 [LYS] 0:2349 [G] D:18 [LYS] 2:1112 [C] ✔
D:130 [VAL] 0:2338 [G] D:129 [PHE] 2:1101 [A] ✔
D:139 [TYR] 0:2350 [G] D:138 [GLU] 2:1113 [A] ✔
D:62 [ASP] 0:2345 [A] D:61 [ILE] 2:1108 [A] ✔
D:97 [GLN] 0:2337 [G] D:97 [ASN] 2:1100 [G] ✔
D:97 [GLN] 0:2338 [G] D:97 [ASN] 2:1101 [A] ✔
D:131 [THR] 0:2347 [C] D:130 [TYR] 2:1110 [C] ❌ 6AZ3_D_2
D:54 [ALA] 0:2345 [A] D:51 [ARG] 2:1108 [A] ❌ 6AZ3_D_2
D:27 [ILE] 0:2345 [A] D:25 [VAL] 2:1108 [A] ❌ 6AZ3_D_2
D:99 [ASP] 0:2348 [C] D:99 [SER] 2:1111 [U] ❌ 6AZ3_D_2
D:99 [ASP] 0:2349 [G] D:99 [SER] 2:1112 [C] ❌ 6AZ3_D_2
D:69 [ILE] 0:2345 [A] D:68 [ALA] 2:1108 [A] ❌ 6AZ3_D_2
D:55 [LYS] 0:2345 [A] D:52 [ALA] 2:1108 [A] ❌ 6AZ3_D_2
D:129 [ASP] 0:2346 [C] D:128 [ASP] 2:1109 [U] ❌ 6AZ3_D_2
D:103 [ASN] 0:2349 [G] D:103 [SER] 2:1112 [C] ❌ 6AZ3_D_2
D:98 [PHE] 0:2336 [G] D:98 [PHE] 2:1099 [G] ❌ 6AZ3_D_2
D:139 [TYR] 0:2349 [G] D:138 [GLU] 2:1112 [C] ❌ 6AZ3_D_2
D:143 [LYS] 0:2349 [G] D:142 [HIS] 2:1112 [C] ❌ 6AZ3_D_2
D:101 [THR] 0:2336 [G] D:101 [THR] 2:1099 [G] ❌ 1YHQ_D_0
D:103 [ASN] 0:2337 [G] D:103 [SER] 2:1100 [G] ❌ 1YHQ_D_0
D:103 [ASN] 0:2336 [G] D:103 [SER] 2:1099 [G] ❌ 1YHQ_D_0
D:131 [THR] 0:2336 [G] D:130 [TYR] 2:1099 [G] ❌ 1YHQ_D_0
D:131 [THR] 0:2338 [G] D:130 [TYR] 2:1101 [A] ❌ 1YHQ_D_0
D:143 [LYS] 0:2350 [G] D:142 [HIS] 2:1113 [A] ❌ 1YHQ_D_0
D:150 [SER] 0:2350 [G] D:149 [ARG] 2:1113 [A] ❌ 1YHQ_D_0
D:56 [ARG] 0:2347 [C] D:53 [ARG] 2:1110 [C] ❌ 1YHQ_D_0
D:56 [ARG] 0:2346 [C] D:53 [ARG] 2:1109 [U] ❌ 1YHQ_D_0
D:56 [ARG] 0:2332 [A] D:53 [ARG] 2:1095 [A] ❌ 6AZ3_2:1095 no longer at interface
D:56 [ARG] 0:2333 [G] D:53 [ARG] 2:1096 [G] ❌ 6AZ3_2:1096 no longer at interface
D:53 [LYS] 0:2373 [U] D:50 [SER] 2:1136 [U] ❌ 6AZ3_2:1136 no longer at interface
D:53 [LYS] 0:2374 [G] D:50 [SER] 2:1137 [U] ❌ 6AZ3_2:1137 no longer at interface
D:55 [LYS] 0:2332 [A] D:52 [ALA] 2:1095 [A] ❌ 6AZ3_2:1095 no longer at interface
D:65 [GLU] 0:2373 [U] D:64 [ASN] 2:1136 [U] ❌ 6AZ3_D:64, 6AZ3_2:1136 no longer at interface
D:101 [THR] 0:2335 [C] D:101 [THR] 2:1098 [G] ❌ 1YHQ_0:2335 no longer at interface
D:145 [ASP] 0:2328 [U] D:144 [LYS] 2:1091 [G] ❌ 1YHQ_0:2328 no longer at interface
D:150 [SER] 0:2352 [G] D:149 [ARG] 2:1115 [G] ❌ 1YHQ_0:2352 no longer at interface
D:58 [VAL] 0:2344 [G] D:55 [THR] 2:1107 [A] ❌ 6AZ3_D:55 no longer at interface
D:58 [VAL] 0:2345 [A] D:55 [THR] 2:1108 [A] ❌ 6AZ3_D:55 no longer at interface
D:70 [GLY] 0:2346 [C] D:69 [VAL] 2:1109 [U] ❌ 6AZ3_D:69 no longer at interface
D:72 [LYS] 0:2347 [C] D:71 [CYS] 2:1110 [C] ❌ 6AZ3_D:71 no longer at interface
D:72 [LYS] 0:2348 [C] D:71 [CYS] 2:1111 [U] ❌ 6AZ3_D:71 no longer at interface
D:52 [THR] 0:2346 [C] D:49 [LEU] 2:1109 [U] ❌ 6AZ3_D:49 no longer at interface
D:52 [THR] 0:2347 [C] D:49 [LEU] 2:1110 [C] ❌ 6AZ3_D:49 no longer at interface
D:156 [ARG] 0:2350 [G] D:155 [HIS] 2:1113 [A] ❌ 6AZ3_D:155 no longer at interface
D:156 [ARG] 0:2351 [C] D:155 [HIS] 2:1114 [C] ❌ 6AZ3_D:155 no longer at interface
D:25 [MET] 0:2346 [C] D:23 [ILE] 2:1109 [U] ❌ 1YHQ_D:25 no longer at interface
D:28 [GLY] 0:2345 [A] D:26 [GLY] 2:1108 [A] ❌ 1YHQ_D:28 no longer at interface
D:57 [THR] 0:2346 [C] D:54 [LEU] 2:1109 [U] ❌ 1YHQ_D:57 no longer at interface
D:59 [GLY] 0:2345 [A] D:56 [VAL] 2:1108 [A] ❌ 1YHQ_D:59 no longer at interface
D:59 [GLY] 0:2344 [G] D:56 [VAL] 2:1107 [A] ❌ 1YHQ_D:59 no longer at interface
D:71 [ALA] 0:2348 [C] D:70 [HIS] 2:1111 [U] ❌ 1YHQ_D:71 no longer at interface
D:71 [ALA] 0:2347 [C] D:70 [HIS] 2:1110 [C] ❌ 1YHQ_D:71 no longer at interface
D:73 [VAL] 0:2348 [C] D:72 [THR] 2:1111 [U] ❌ 1YHQ_D:73 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 0.81 2.69 0.24 0.91 0.81 0.84 0.76 0.66 0.48 0.22 0.55


Other pairs involving 1YHQ_D_0 or 6AZ3_D_2

Total number of entries: 19

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare
1YHQ_D_0 5NS3_A_C 0.68 0.64 1.27 0.1 Ribosomal protein L5 compare
1YHQ_D_0 5NS4_A_C 0.72 0.65 1.31 0.09 Ribosomal protein L5 compare
4Y4O_1G_1A 6AZ3_D_2 0.74 0.83 2.7 0.27 Ribosomal protein L5 compare
1VQ8_D_0 6AZ3_D_2 0.50 0.8 2.77 0.21 Ribosomal protein L5 compare
5NS3_A_C 6AZ3_D_2 0.54 0.65 1.87 0.2 Ribosomal protein L5 compare
5NS4_A_C 6AZ3_D_2 0.56 0.67 1.9 0.18 Ribosomal protein L5 compare
1YHQ_D_0 6AZ3_D_2 0.66 0.81 2.69 0.24 Ribosomal protein L5 compare
6AZ3_D_2 6S0Z_F_A 0.39 0.82 3.19 0.12 Ribosomal protein L5 compare
1YHQ_D_0 6S0Z_F_A 0.68 0.93 3.49 0.29 Ribosomal protein L5 compare
6AZ3_D_2 7ASM_F_A 0.36 0.82 3.6 0.06 Ribosomal protein L5 compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
6AZ3_D_2 7K00_f_a 0.79 0.83 2.15 0.24 Ribosomal protein L5 compare
1YHQ_D_0 7K00_f_a 0.40 0.9 3.5 0.14 Ribosomal protein L5 compare
6AZ3_D_2 7O7Y_BJ_B5 0.92 0.92 0.74 0.75 Ribosomal protein L5 Eukaryotic large subunit ribosomal RNA compare
1YHQ_D_0 7O7Y_BJ_B5 0.31 0.93 3.99 0.05 Ribosomal protein L5 compare
6AZ3_D_2 7RYG_F_A 0.53 0.81 3.21 0.21 Ribosomal protein L5 compare
1YHQ_D_0 7RYG_F_A 0.71 0.9 2.81 0.38 Ribosomal protein L5 compare