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All interfaces > All interologs > Interface groups > group133 > 1YHQ_D_0 vs 6S0Z_F_A

Interface analysis


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Common contacts -

1YHQ_D
1YHQ_0
6S0Z_F
6S0Z_A
Conserved?
D:24 [HIS] 0:2347 [C] F:37 [ASN] A:2340 [C] ✔
D:131 [THR] 0:2337 [G] F:155 [VAL] A:2330 [G] ✔
D:131 [THR] 0:2347 [C] F:155 [VAL] A:2340 [C] ✔
D:131 [THR] 0:2348 [C] F:155 [VAL] A:2341 [A] ✔
D:133 [ASN] 0:2348 [C] F:157 [VAL] A:2341 [A] ✔
D:133 [ASN] 0:2349 [G] F:157 [VAL] A:2342 [U] ✔
D:54 [ALA] 0:2346 [C] F:69 [LYS] A:2339 [U] ✔
D:60 [GLU] 0:2345 [A] F:77 [PHE] A:2338 [A] ✔
D:96 [SER] 0:2338 [G] F:120 [LYS] A:2331 [G] ✔
D:27 [ILE] 0:2345 [A] F:40 [VAL] A:2338 [A] ✔
D:101 [THR] 0:2349 [G] F:125 [ARG] A:2342 [U] ✔
D:101 [THR] 0:2350 [G] F:125 [ARG] A:2343 [U] ✔
D:58 [VAL] 0:2344 [G] F:74 [ILE] A:2337 [A] ✔
D:58 [VAL] 0:2345 [A] F:74 [ILE] A:2338 [A] ✔
D:99 [ASP] 0:2336 [G] F:123 [ASP] A:2329 [U] ✔
D:99 [ASP] 0:2337 [G] F:123 [ASP] A:2330 [G] ✔
D:99 [ASP] 0:2349 [G] F:123 [ASP] A:2342 [U] ✔
D:70 [GLY] 0:2346 [C] F:86 [GLY] A:2339 [U] ✔
D:22 [VAL] 0:2347 [C] F:35 [VAL] A:2340 [C] ✔
D:22 [VAL] 0:2348 [C] F:35 [VAL] A:2341 [A] ✔
D:72 [LYS] 0:2347 [C] F:88 [LYS] A:2340 [C] ✔
D:72 [LYS] 0:2348 [C] F:88 [LYS] A:2341 [A] ✔
D:53 [LYS] 0:2346 [C] F:68 [THR] A:2339 [U] ✔
D:53 [LYS] 0:2347 [C] F:68 [THR] A:2340 [C] ✔
D:69 [ILE] 0:2345 [A] F:85 [ILE] A:2338 [A] ✔
D:69 [ILE] 0:2346 [C] F:85 [ILE] A:2339 [U] ✔
D:106 [PHE] 0:2338 [G] F:130 [LEU] A:2331 [G] ✔
D:105 [SER] 0:2337 [G] F:129 [THR] A:2330 [G] ✔
D:105 [SER] 0:2338 [G] F:129 [THR] A:2331 [G] ✔
D:55 [LYS] 0:2346 [C] F:70 [ALA] A:2339 [U] ✔
D:129 [ASP] 0:2338 [G] F:153 [ASP] A:2331 [G] ✔
D:103 [ASN] 0:2348 [C] F:127 [ASN] A:2341 [A] ✔
D:103 [ASN] 0:2349 [G] F:127 [ASN] A:2342 [U] ✔
D:26 [GLY] 0:2346 [C] F:39 [GLY] A:2339 [U] ✔
D:98 [PHE] 0:2336 [G] F:122 [PHE] A:2329 [U] ✔
D:98 [PHE] 0:2337 [G] F:122 [PHE] A:2330 [G] ✔
D:20 [LYS] 0:2348 [C] F:33 [LYS] A:2341 [A] ✔
D:20 [LYS] 0:2349 [G] F:33 [LYS] A:2342 [U] ✔
D:97 [GLN] 0:2337 [G] F:121 [ALA] A:2330 [G] ✔
D:97 [GLN] 0:2338 [G] F:121 [ALA] A:2331 [G] ✔
D:24 [HIS] 0:2338 [G] F:37 [ASN] A:2331 [G] ❌ 6S0Z_F_A
D:24 [HIS] 0:2346 [C] F:37 [ASN] A:2339 [U] ❌ 6S0Z_F_A
D:54 [ALA] 0:2345 [A] F:69 [LYS] A:2338 [A] ❌ 6S0Z_F_A
D:107 [GLY] 0:2338 [G] F:132 [VAL] A:2331 [G] ❌ 6S0Z_F_A
D:60 [GLU] 0:2344 [G] F:77 [PHE] A:2337 [A] ❌ 6S0Z_F_A
D:96 [SER] 0:2337 [G] F:120 [LYS] A:2330 [G] ❌ 6S0Z_F_A
D:99 [ASP] 0:2348 [C] F:123 [ASP] A:2341 [A] ❌ 6S0Z_F_A
D:55 [LYS] 0:2345 [A] F:70 [ALA] A:2338 [A] ❌ 6S0Z_F_A
D:129 [ASP] 0:2346 [C] F:153 [ASP] A:2339 [U] ❌ 6S0Z_F_A
D:26 [GLY] 0:2345 [A] F:39 [GLY] A:2338 [A] ❌ 6S0Z_F_A
D:129 [ASP] 0:2337 [G] F:153 [ASP] A:2330 [G] ❌ 1YHQ_D_0
D:129 [ASP] 0:2347 [C] F:153 [ASP] A:2340 [C] ❌ 1YHQ_D_0
D:27 [ILE] 0:2346 [C] F:40 [VAL] A:2339 [U] ❌ 1YHQ_D_0
D:56 [ARG] 0:2346 [C] F:72 [LYS] A:2339 [U] ❌ 1YHQ_D_0
D:58 [VAL] 0:2346 [C] F:74 [ILE] A:2339 [U] ❌ 1YHQ_D_0
D:56 [ARG] 0:2332 [A] F:72 [LYS] A:2325 [A] ❌ 6S0Z_A:2325 no longer at interface
D:56 [ARG] 0:2333 [G] F:72 [LYS] A:2326 [G] ❌ 6S0Z_A:2326 no longer at interface
D:53 [LYS] 0:2373 [U] F:68 [THR] A:2366 [G] ❌ 6S0Z_A:2366 no longer at interface
D:53 [LYS] 0:2374 [G] F:68 [THR] A:2367 [A] ❌ 6S0Z_A:2367 no longer at interface
D:55 [LYS] 0:2332 [A] F:70 [ALA] A:2325 [A] ❌ 6S0Z_A:2325 no longer at interface
D:65 [GLU] 0:2373 [U] F:81 [GLU] A:2366 [G] ❌ 6S0Z_F:81, 6S0Z_A:2366 no longer at interface
D:100 [ASP] 0:2336 [G] F:124 [GLY] A:2329 [U] ❌ 6S0Z_F:124 no longer at interface
D:104 [PHE] 0:2337 [G] F:128 [TYR] A:2330 [G] ❌ 6S0Z_F:128 no longer at interface
D:52 [THR] 0:2346 [C] F:67 [VAL] A:2339 [U] ❌ 6S0Z_F:67 no longer at interface
D:52 [THR] 0:2347 [C] F:67 [VAL] A:2340 [C] ❌ 6S0Z_F:67 no longer at interface
D:130 [VAL] 0:2338 [G] F:154 [ILE] A:2331 [G] ❌ 6S0Z_F:154 no longer at interface
D:59 [GLY] 0:2344 [G] F:76 [THR] A:2337 [A] ❌ 1YHQ_D:59 no longer at interface
D:59 [GLY] 0:2345 [A] F:76 [THR] A:2338 [A] ❌ 1YHQ_D:59 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 0.93 3.49 0.29 0.74 0.93 0.79 0.71 0.68 0.57 0.29 0.46


Other pairs involving 1YHQ_D_0 or 6S0Z_F_A

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_D_0 6S0Z_F_A 0.67 0.93 3.72 0.29 Ribosomal protein L5 compare
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
1YHQ_D_0 7RYG_F_A 0.71 0.9 2.81 0.38 Ribosomal protein L5 compare
1YHQ_D_0 5NS4_A_C 0.72 0.65 1.31 0.09 Ribosomal protein L5 compare
1YHQ_D_0 7O7Y_BJ_B5 0.31 0.93 3.99 0.05 Ribosomal protein L5 compare
1YHQ_D_0 6AZ3_D_2 0.66 0.81 2.69 0.24 Ribosomal protein L5 compare
1YHQ_D_0 6S0Z_F_A 0.68 0.93 3.49 0.29 Ribosomal protein L5 compare
1YHQ_D_0 5NS3_A_C 0.68 0.64 1.27 0.1 Ribosomal protein L5 compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
1YHQ_D_0 7K00_f_a 0.40 0.9 3.5 0.14 Ribosomal protein L5 compare
4Y4O_1G_1A 6S0Z_F_A 0.67 0.96 1.7 0.57 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
6AZ3_D_2 6S0Z_F_A 0.39 0.82 3.19 0.12 Ribosomal protein L5 compare
6S0Z_F_A 7K00_f_a 0.59 0.97 2.39 0.52 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
6S0Z_F_A 7ASM_F_A 0.57 0.98 2.05 0.88 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
6S0Z_F_A 7O7Y_BJ_B5 0.35 0.89 4.72 0.15 Ribosomal protein L5 compare
6S0Z_F_A 7RYG_F_A 0.59 0.97 3.23 0.48 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare