RNAprotDB

All interfaces > All interologs > Interface groups > group133 > 1YHQ_D_0 vs 7O7Y_BJ_B5

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1YHQ_D
1YHQ_0
7O7Y_BJ
7O7Y_B5
Conserved?
D:24 [HIS] 0:2347 [C] BJ:22 [LEU] B5:4005 [C] ✔
D:54 [ALA] 0:2346 [C] BJ:52 [LYS] B5:4004 [C] ✔
D:107 [GLY] 0:2338 [G] BJ:107 [PHE] B5:3996 [G] ✔
D:60 [GLU] 0:2344 [G] BJ:60 [PHE] B5:4002 [A] ✔
D:60 [GLU] 0:2345 [A] BJ:60 [PHE] B5:4003 [A] ✔
D:96 [SER] 0:2337 [G] BJ:97 [ASN] B5:3995 [G] ✔
D:96 [SER] 0:2338 [G] BJ:97 [ASN] B5:3996 [G] ✔
D:27 [ILE] 0:2345 [A] BJ:25 [CYS] B5:4003 [A] ✔
D:150 [SER] 0:2351 [C] BJ:150 [CYS] B5:4009 [C] ✔
D:99 [ASP] 0:2336 [G] BJ:101 [ASP] B5:3994 [A] ✔
D:145 [ASP] 0:2329 [C] BJ:145 [LYS] B5:3987 [C] ✔
D:145 [ASP] 0:2368 [A] BJ:145 [LYS] B5:4026 [A] ✔
D:104 [PHE] 0:2337 [G] BJ:104 [ASN] B5:3995 [G] ✔
D:53 [LYS] 0:2346 [C] BJ:51 [SER] B5:4004 [C] ✔
D:53 [LYS] 0:2347 [C] BJ:51 [SER] B5:4005 [C] ✔
D:69 [ILE] 0:2346 [C] BJ:69 [ALA] B5:4004 [C] ✔
D:106 [PHE] 0:2338 [G] BJ:106 [GLY] B5:3996 [G] ✔
D:105 [SER] 0:2337 [G] BJ:105 [PHE] B5:3995 [G] ✔
D:55 [LYS] 0:2345 [A] BJ:53 [ALA] B5:4003 [A] ✔
D:55 [LYS] 0:2346 [C] BJ:53 [ALA] B5:4004 [C] ✔
D:129 [ASP] 0:2338 [G] BJ:130 [PHE] B5:3996 [G] ✔
D:98 [PHE] 0:2336 [G] BJ:100 [SER] B5:3994 [A] ✔
D:98 [PHE] 0:2337 [G] BJ:100 [SER] B5:3995 [G] ✔
D:130 [VAL] 0:2338 [G] BJ:131 [TYR] B5:3996 [G] ✔
D:97 [GLN] 0:2337 [G] BJ:99 [PHE] B5:3995 [G] ✔
D:24 [HIS] 0:2338 [G] BJ:22 [LEU] B5:3996 [G] ❌ 7O7Y_BJ_B5
D:24 [HIS] 0:2346 [C] BJ:22 [LEU] B5:4004 [C] ❌ 7O7Y_BJ_B5
D:54 [ALA] 0:2345 [A] BJ:52 [LYS] B5:4003 [A] ❌ 7O7Y_BJ_B5
D:99 [ASP] 0:2337 [G] BJ:101 [ASP] B5:3995 [G] ❌ 7O7Y_BJ_B5
D:99 [ASP] 0:2348 [C] BJ:101 [ASP] B5:4006 [U] ❌ 7O7Y_BJ_B5
D:99 [ASP] 0:2349 [G] BJ:101 [ASP] B5:4007 [C] ❌ 7O7Y_BJ_B5
D:100 [ASP] 0:2336 [G] BJ:102 [THR] B5:3994 [A] ❌ 7O7Y_BJ_B5
D:69 [ILE] 0:2345 [A] BJ:69 [ALA] B5:4003 [A] ❌ 7O7Y_BJ_B5
D:105 [SER] 0:2338 [G] BJ:105 [PHE] B5:3996 [G] ❌ 7O7Y_BJ_B5
D:129 [ASP] 0:2346 [C] BJ:130 [PHE] B5:4004 [C] ❌ 7O7Y_BJ_B5
D:26 [GLY] 0:2345 [A] BJ:24 [ILE] B5:4003 [A] ❌ 7O7Y_BJ_B5
D:26 [GLY] 0:2346 [C] BJ:24 [ILE] B5:4004 [C] ❌ 7O7Y_BJ_B5
D:97 [GLN] 0:2338 [G] BJ:99 [PHE] B5:3996 [G] ❌ 7O7Y_BJ_B5
D:100 [ASP] 0:2350 [G] BJ:102 [THR] B5:4008 [C] ❌ 1YHQ_D_0
D:100 [ASP] 0:2349 [G] BJ:102 [THR] B5:4007 [C] ❌ 1YHQ_D_0
D:104 [PHE] 0:2349 [G] BJ:104 [ASN] B5:4007 [C] ❌ 1YHQ_D_0
D:104 [PHE] 0:2348 [C] BJ:104 [ASN] B5:4006 [U] ❌ 1YHQ_D_0
D:106 [PHE] 0:2337 [G] BJ:106 [GLY] B5:3995 [G] ❌ 1YHQ_D_0
D:130 [VAL] 0:2337 [G] BJ:131 [TYR] B5:3995 [G] ❌ 1YHQ_D_0
D:130 [VAL] 0:2336 [G] BJ:131 [TYR] B5:3994 [A] ❌ 1YHQ_D_0
D:130 [VAL] 0:2348 [C] BJ:131 [TYR] B5:4006 [U] ❌ 1YHQ_D_0
D:27 [ILE] 0:2346 [C] BJ:25 [CYS] B5:4004 [C] ❌ 1YHQ_D_0
D:56 [ARG] 0:2346 [C] BJ:54 [ARG] B5:4004 [C] ❌ 1YHQ_D_0
D:56 [ARG] 0:2345 [A] BJ:54 [ARG] B5:4003 [A] ❌ 1YHQ_D_0
D:97 [GLN] 0:2336 [G] BJ:99 [PHE] B5:3994 [A] ❌ 1YHQ_D_0
D:56 [ARG] 0:2332 [A] BJ:54 [ARG] B5:3990 [A] ❌ 7O7Y_B5:3990 no longer at interface
D:56 [ARG] 0:2333 [G] BJ:54 [ARG] B5:3991 [G] ❌ 7O7Y_B5:3991 no longer at interface
D:53 [LYS] 0:2373 [U] BJ:51 [SER] B5:4031 [U] ❌ 7O7Y_B5:4031 no longer at interface
D:53 [LYS] 0:2374 [G] BJ:51 [SER] B5:4032 [C] ❌ 7O7Y_B5:4032 no longer at interface
D:55 [LYS] 0:2332 [A] BJ:53 [ALA] B5:3990 [A] ❌ 7O7Y_B5:3990 no longer at interface
D:65 [GLU] 0:2373 [U] BJ:66 [GLU] B5:4031 [U] ❌ 7O7Y_BJ:66, 7O7Y_B5:4031 no longer at interface
D:99 [ASP] 0:2335 [C] BJ:101 [ASP] B5:3993 [G] ❌ 1YHQ_0:2335 no longer at interface
D:100 [ASP] 0:2335 [C] BJ:102 [THR] B5:3993 [G] ❌ 1YHQ_0:2335 no longer at interface
D:145 [ASP] 0:2328 [U] BJ:145 [LYS] B5:3986 [G] ❌ 1YHQ_0:2328 no longer at interface
D:131 [THR] 0:2337 [G] BJ:132 [VAL] B5:3995 [G] ❌ 7O7Y_BJ:132 no longer at interface
D:131 [THR] 0:2347 [C] BJ:132 [VAL] B5:4005 [C] ❌ 7O7Y_BJ:132 no longer at interface
D:131 [THR] 0:2348 [C] BJ:132 [VAL] B5:4006 [U] ❌ 7O7Y_BJ:132 no longer at interface
D:133 [ASN] 0:2348 [C] BJ:134 [LEU] B5:4006 [U] ❌ 7O7Y_BJ:134 no longer at interface
D:133 [ASN] 0:2349 [G] BJ:134 [LEU] B5:4007 [C] ❌ 7O7Y_BJ:134 no longer at interface
D:58 [VAL] 0:2344 [G] BJ:56 [THR] B5:4002 [A] ❌ 7O7Y_BJ:56 no longer at interface
D:58 [VAL] 0:2345 [A] BJ:56 [THR] B5:4003 [A] ❌ 7O7Y_BJ:56 no longer at interface
D:70 [GLY] 0:2346 [C] BJ:70 [VAL] B5:4004 [C] ❌ 7O7Y_BJ:70 no longer at interface
D:22 [VAL] 0:2347 [C] BJ:20 [LEU] B5:4005 [C] ❌ 7O7Y_BJ:20 no longer at interface
D:22 [VAL] 0:2348 [C] BJ:20 [LEU] B5:4006 [U] ❌ 7O7Y_BJ:20 no longer at interface
D:72 [LYS] 0:2347 [C] BJ:72 [CYS] B5:4005 [C] ❌ 7O7Y_BJ:72 no longer at interface
D:72 [LYS] 0:2348 [C] BJ:72 [CYS] B5:4006 [U] ❌ 7O7Y_BJ:72 no longer at interface
D:103 [ASN] 0:2348 [C] BJ:103 [GLY] B5:4006 [U] ❌ 7O7Y_BJ:103 no longer at interface
D:103 [ASN] 0:2349 [G] BJ:103 [GLY] B5:4007 [C] ❌ 7O7Y_BJ:103 no longer at interface
D:20 [LYS] 0:2348 [C] BJ:18 [ARG] B5:4006 [U] ❌ 7O7Y_BJ:18 no longer at interface
D:20 [LYS] 0:2349 [G] BJ:18 [ARG] B5:4007 [C] ❌ 7O7Y_BJ:18 no longer at interface
D:52 [THR] 0:2346 [C] BJ:50 [PHE] B5:4004 [C] ❌ 7O7Y_BJ:50 no longer at interface
D:52 [THR] 0:2347 [C] BJ:50 [PHE] B5:4005 [C] ❌ 7O7Y_BJ:50 no longer at interface
D:139 [TYR] 0:2349 [G] BJ:139 [PHE] B5:4007 [C] ❌ 7O7Y_BJ:139 no longer at interface
D:139 [TYR] 0:2350 [G] BJ:139 [PHE] B5:4008 [C] ❌ 7O7Y_BJ:139 no longer at interface
D:143 [LYS] 0:2349 [G] BJ:143 [ASP] B5:4007 [C] ❌ 7O7Y_BJ:143 no longer at interface
D:62 [ASP] 0:2345 [A] BJ:63 [ARG] B5:4003 [A] ❌ 7O7Y_BJ:63 no longer at interface
D:156 [ARG] 0:2350 [G] BJ:155 [HIS] B5:4008 [C] ❌ 7O7Y_BJ:155 no longer at interface
D:156 [ARG] 0:2351 [C] BJ:155 [HIS] B5:4009 [C] ❌ 7O7Y_BJ:155 no longer at interface
D:128 [LEU] 0:2346 [C] BJ:129 [ASP] B5:4004 [C] ❌ 1YHQ_D:128 no longer at interface
D:128 [LEU] 0:2338 [G] BJ:129 [ASP] B5:3996 [G] ❌ 1YHQ_D:128 no longer at interface
D:132 [VAL] 0:2349 [G] BJ:133 [VAL] B5:4007 [C] ❌ 1YHQ_D:132 no longer at interface
D:132 [VAL] 0:2348 [C] BJ:133 [VAL] B5:4006 [U] ❌ 1YHQ_D:132 no longer at interface
D:142 [ALA] 0:2350 [G] BJ:142 [ALA] B5:4008 [C] ❌ 1YHQ_D:142 no longer at interface
D:146 [LYS] 0:2368 [A] BJ:146 [ARG] B5:4026 [A] ❌ 1YHQ_D:146 no longer at interface
D:21 [VAL] 0:2349 [G] BJ:19 [LYS] B5:4007 [C] ❌ 1YHQ_D:21 no longer at interface
D:21 [VAL] 0:2348 [C] BJ:19 [LYS] B5:4006 [U] ❌ 1YHQ_D:21 no longer at interface
D:23 [VAL] 0:2347 [C] BJ:21 [CYS] B5:4005 [C] ❌ 1YHQ_D:23 no longer at interface
D:23 [VAL] 0:2348 [C] BJ:21 [CYS] B5:4006 [U] ❌ 1YHQ_D:23 no longer at interface
D:25 [MET] 0:2346 [C] BJ:23 [ASN] B5:4004 [C] ❌ 1YHQ_D:25 no longer at interface
D:25 [MET] 0:2347 [C] BJ:23 [ASN] B5:4005 [C] ❌ 1YHQ_D:25 no longer at interface
D:25 [MET] 0:2338 [G] BJ:23 [ASN] B5:3996 [G] ❌ 1YHQ_D:25 no longer at interface
D:28 [GLY] 0:2345 [A] BJ:27 [GLY] B5:4003 [A] ❌ 1YHQ_D:28 no longer at interface
D:57 [THR] 0:2346 [C] BJ:55 [TYR] B5:4004 [C] ❌ 1YHQ_D:57 no longer at interface
D:59 [GLY] 0:2345 [A] BJ:57 [VAL] B5:4003 [A] ❌ 1YHQ_D:59 no longer at interface
D:59 [GLY] 0:2344 [G] BJ:57 [VAL] B5:4002 [A] ❌ 1YHQ_D:59 no longer at interface
D:61 [PHE] 0:2345 [A] BJ:62 [ILE] B5:4003 [A] ❌ 1YHQ_D:61 no longer at interface
D:68 [PRO] 0:2346 [C] BJ:68 [ILE] B5:4004 [C] ❌ 1YHQ_D:68 no longer at interface
D:68 [PRO] 0:2345 [A] BJ:68 [ILE] B5:4003 [A] ❌ 1YHQ_D:68 no longer at interface
D:71 [ALA] 0:2347 [C] BJ:71 [HIS] B5:4005 [C] ❌ 1YHQ_D:71 no longer at interface
D:71 [ALA] 0:2348 [C] BJ:71 [HIS] B5:4006 [U] ❌ 1YHQ_D:71 no longer at interface
D:73 [VAL] 0:2348 [C] BJ:73 [THR] B5:4006 [U] ❌ 1YHQ_D:73 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 0.93 3.99 0.05 0.92 0.94 0.59 0.76 0.31 0.21 0.04 0.69


Other pairs involving 1YHQ_D_0 or 7O7Y_BJ_B5

Total number of entries: 18

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 7O7Y_BJ_B5 0.48 0.89 4.25 0.09 Ribosomal protein L5 compare
7ASM_F_A 7O7Y_BJ_B5 0.34 0.89 4.56 0.14 Ribosomal protein L5 compare
6AZ3_D_2 7O7Y_BJ_B5 0.92 0.92 0.74 0.75 Ribosomal protein L5 Eukaryotic large subunit ribosomal RNA compare
7K00_f_a 7O7Y_BJ_B5 0.84 0.89 3.13 0.33 Ribosomal protein L5 compare
1VQ8_D_0 7O7Y_BJ_B5 0.34 0.93 3.98 0.05 Ribosomal protein L5 compare
1VQ8_D_0 1YHQ_D_0 0.99 1.0 0.39 0.94 Ribosomal protein L5 Archaeal large subunit ribosomal RNA compare
5NS3_A_C 7O7Y_BJ_B5 0.60 0.66 1.88 0.3 Ribosomal protein L5 compare
5NS4_A_C 7O7Y_BJ_B5 0.64 0.68 1.95 0.27 Ribosomal protein L5 compare
1YHQ_D_0 7RYG_F_A 0.71 0.9 2.81 0.38 Ribosomal protein L5 compare
1YHQ_D_0 5NS4_A_C 0.72 0.65 1.31 0.09 Ribosomal protein L5 compare
1YHQ_D_0 7O7Y_BJ_B5 0.31 0.93 3.99 0.05 Ribosomal protein L5 compare
1YHQ_D_0 6AZ3_D_2 0.66 0.81 2.69 0.24 Ribosomal protein L5 compare
1YHQ_D_0 6S0Z_F_A 0.68 0.93 3.49 0.29 Ribosomal protein L5 compare
1YHQ_D_0 5NS3_A_C 0.68 0.64 1.27 0.1 Ribosomal protein L5 compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
1YHQ_D_0 7K00_f_a 0.40 0.9 3.5 0.14 Ribosomal protein L5 compare
6S0Z_F_A 7O7Y_BJ_B5 0.35 0.89 4.72 0.15 Ribosomal protein L5 compare