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All interfaces > All interologs > Interface groups > group133 > 4Y4O_1G_1A

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1G
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1G:36 [LYS] 1A:2326 [C] 3.41 1A:2314 [G] 91.8
1G:36 [LYS] 1A:2327 [G] 2.5 1A:2313 [C] 91.8
1G:38 [VAL] 1A:2325 [C] 3.22 1A:2315 [G] 70.3
1G:38 [VAL] 1A:2326 [C] 3.62 1A:2314 [G] 70.3
1G:39 [ILE] 1A:2325 [C] 4.98 1A:2315 [G] 76.7
1G:40 [ASN] 1A:2316 [G] 4.11 1A:2324 [U] 88.2
1G:40 [ASN] 1A:2324 [U] 2.71 1A:2316 [G] base:SC, sugar:SC 88.2
1G:40 [ASN] 1A:2325 [C] 2.93 1A:2315 [G] base/AA stacks 88.2
1G:41 [GLN] 1A:2317 [A] 4.71 49.3
1G:41 [GLN] 1A:2324 [U] 4.51 1A:2316 [G] 49.3
1G:42 [GLY] 1A:2317 [A] 3.98 76.1
1G:42 [GLY] 1A:2318 [C] 3.33 76.1
1G:42 [GLY] 1A:2319 [G] 3.46 76.1
1G:42 [GLY] 1A:2323 [A] 4.75 76.1
1G:42 [GLY] 1A:2324 [U] 3.25 1A:2316 [G] 76.1
1G:43 [LEU] 1A:2317 [A] 3.83 57.2
1G:43 [LEU] 1A:2318 [C] 3.75 57.2
1G:43 [LEU] 1A:2319 [G] 2.52 base:BB, base:BB 57.2
1G:43 [LEU] 1A:2323 [A] 4.79 57.2
1G:44 [GLY] 1A:2319 [G] 4.66 70.1
1G:44 [GLY] 1A:2323 [A] 3.61 70.1
1G:45 [GLU] 1A:2317 [A] 4.72 19.4
1G:45 [GLU] 1A:2318 [C] 2.73 base:SC 19.4
1G:45 [GLU] 1A:2319 [G] 2.97 base:SC 19.4
1G:45 [GLU] 1A:2323 [A] 4.95 19.4
1G:47 [LYS] 1A:2323 [A] 3.58 41.0
1G:71 [THR] 1A:2324 [U] 2.88 1A:2316 [G] sugar:SC 78.6
1G:71 [THR] 1A:2325 [C] 3.93 1A:2315 [G] 78.6
1G:72 [ARG] 1A:2324 [U] 3.75 1A:2316 [G] 49.6
1G:73 [ALA] 1A:2323 [A] 4.77 86.5
1G:73 [ALA] 1A:2324 [U] 3.12 1A:2316 [G] 86.5
1G:74 [LYS] 1A:2324 [U] 2.68 1A:2316 [G] 83.2
1G:75 [LYS] 1A:2322 [A] 3.14 sugar:SC 67.9
1G:75 [LYS] 1A:2323 [A] 4.86 67.9
1G:75 [LYS] 1A:2324 [U] 4.53 1A:2316 [G] 67.9
1G:77 [ILE] 1A:2322 [A] 3.65 87.1
1G:77 [ILE] 1A:2323 [A] 3.49 87.1
1G:79 [ASN] 1A:2321 [A] 4.11 48.0
1G:79 [ASN] 1A:2322 [A] 3.51 48.0
1G:80 [PHE] 1A:2320 [G] 3.65 base/AA stacks 89.7
1G:80 [PHE] 1A:2322 [A] 3.29 base/AA stacks 89.7
1G:80 [PHE] 1A:2323 [A] 3.54 base/AA stacks 89.7
1G:82 [LEU] 1A:2323 [A] 3.91 61.8
1G:88 [ILE] 1A:2323 [A] 3.36 79.8
1G:88 [ILE] 1A:2324 [U] 3.48 1A:2316 [G] 79.8
1G:89 [GLY] 1A:2324 [U] 4.35 1A:2316 [G] 89.3
1G:90 [LEU] 1A:2324 [U] 4.8 1A:2316 [G] 46.1
1G:91 [ARG] 1A:2325 [C] 3.72 1A:2315 [G] 61.3
1G:91 [ARG] 1A:2326 [C] 3.7 1A:2314 [G] 61.3
1G:121 [ASN] 1A:2316 [G] 3.94 1A:2324 [U] 43.8
1G:123 [ASN] 1A:2315 [G] 4.53 1A:2325 [C] 46.4
1G:123 [ASN] 1A:2316 [G] 4.95 1A:2324 [U] 46.4
1G:124 [SER] 1A:2315 [G] 3.17 1A:2325 [C] 72.5
1G:124 [SER] 1A:2316 [G] 2.87 1A:2324 [U] 72.5
1G:125 [PHE] 1A:2314 [G] 4.19 1A:2326 [C] 62.1
1G:125 [PHE] 1A:2315 [G] 3.66 1A:2325 [C] 62.1
1G:126 [ASP] 1A:2314 [G] 2.67 1A:2326 [C] base:SC, base:SC, sugar:BB 91.5
1G:126 [ASP] 1A:2315 [G] 3.95 1A:2325 [C] 91.5
1G:126 [ASP] 1A:2326 [C] 3.95 1A:2314 [G] 91.5
1G:126 [ASP] 1A:2327 [G] 3.71 1A:2313 [C] 91.5
1G:127 [GLY] 1A:2314 [G] 4.31 1A:2326 [C] 15.7
1G:128 [ARG] 1A:2327 [G] 3.54 1A:2313 [C] 20.8
1G:128 [ARG] 1A:2328 [C] 2.99 1A:2312 [G] 20.8
1G:130 [ASN] 1A:2315 [G] 4.99 1A:2325 [C] 92.3
1G:130 [ASN] 1A:2326 [C] 4.76 1A:2314 [G] 92.3
1G:130 [ASN] 1A:2327 [G] 3.52 1A:2313 [C] sugar:SC 92.3
1G:131 [TYR] 1A:2315 [G] 4.5 1A:2325 [C] 37.8
1G:132 [ASN] 1A:2314 [G] 4.9 1A:2326 [C] 69.3
1G:132 [ASN] 1A:2315 [G] 2.85 1A:2325 [C] base:SC, sugar:SC 69.3
1G:132 [ASN] 1A:2316 [G] 3.07 1A:2324 [U] 69.3
1G:132 [ASN] 1A:2325 [C] 4.99 1A:2315 [G] 69.3
1G:132 [ASN] 1A:2326 [C] 4.14 1A:2314 [G] 69.3
1G:133 [LEU] 1A:2316 [G] 3.54 1A:2324 [U] 61.7
1G:134 [GLY] 1A:2316 [G] 3.62 1A:2324 [U] 83.7
1G:134 [GLY] 1A:2317 [A] 3.49 83.7
1G:135 [LEU] 1A:2317 [A] 3.05 69.0
1G:136 [ARG] 1A:2317 [A] 3.48 39.6
1G:152 [LEU] 1A:2317 [A] 4.74 40.4
1G:153 [ARG] 1A:2317 [A] 3.76 32.1
1G:154 [GLY] 1A:2317 [A] 2.79 base:BB 95.5
1G:155 [MET] 1A:2316 [G] 4.87 1A:2324 [U] 47.2
1G:155 [MET] 1A:2317 [A] 3.63 47.2
1G:156 [ASP] 1A:2316 [G] 2.38 1A:2324 [U] base:SC 64.1
1G:156 [ASP] 1A:2317 [A] 3.46 64.1
1G:156 [ASP] 1A:2324 [U] 4.6 1A:2316 [G] 64.1
1G:156 [ASP] 1A:2325 [C] 4.42 1A:2315 [G] 64.1
1G:157 [ILE] 1A:2316 [G] 4.63 1A:2324 [U] 85.9
1G:158 [ALA] 1A:2325 [C] 4.79 1A:2315 [G] 76.8
1G:158 [ALA] 1A:2326 [C] 3.36 1A:2314 [G] 76.8
1G:160 [VAL] 1A:2326 [C] 3.49 1A:2314 [G] 56.5
1G:160 [VAL] 1A:2327 [G] 4.42 1A:2313 [C] 56.5

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group133 4Y4O_1G_1A 1G: 50s ribosomal protein l5, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHQ0 Ribosomal protein L5 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 6AZ3_D_2 0.74 0.83 2.7 0.27 Ribosomal protein L5 compare
4Y4O_1G_1A 7RYG_F_A 0.78 0.96 3.49 0.53 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
4Y4O_1G_1A 7ASM_F_A 0.41 0.95 3.56 0.49 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
4Y4O_1G_1A 6S0Z_F_A 0.67 0.96 1.7 0.57 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
4Y4O_1G_1A 7O7Y_BJ_B5 0.48 0.89 4.25 0.09 Ribosomal protein L5 compare
4Y4O_1G_1A 7K00_f_a 0.92 0.97 1.89 0.55 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
1VQ8_D_0 4Y4O_1G_1A 0.75 0.93 3.28 0.21 Ribosomal protein L5 compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare