RNAprotDB

All interfaces > All interologs > Interface groups > group133 > 4Y4O_1G_1A vs 7ASM_F_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_1G
4Y4O_1A
7ASM_F
7ASM_A
Conserved?
1G:39 [ILE] 1A:2325 [C] F:37 [ASN] A:2340 [C] ✔
1G:75 [LYS] 1A:2324 [U] F:72 [LYS] A:2339 [U] ✔
1G:88 [ILE] 1A:2324 [U] F:85 [ILE] A:2339 [U] ✔
1G:128 [ARG] 1A:2327 [G] F:125 [ARG] A:2342 [U] ✔
1G:73 [ALA] 1A:2324 [U] F:70 [ALA] A:2339 [U] ✔
1G:80 [PHE] 1A:2323 [A] F:77 [PHE] A:2338 [A] ✔
1G:127 [GLY] 1A:2314 [G] F:124 [GLY] A:2329 [U] ✔
1G:44 [GLY] 1A:2323 [A] F:42 [ASP] A:2338 [A] ✔
1G:124 [SER] 1A:2315 [G] F:121 [ALA] A:2330 [G] ✔
1G:82 [LEU] 1A:2323 [A] F:79 [LEU] A:2338 [A] ✔
1G:41 [GLN] 1A:2317 [A] F:39 [GLY] A:2332 [U] ✔
1G:41 [GLN] 1A:2324 [U] F:39 [GLY] A:2339 [U] ✔
1G:71 [THR] 1A:2324 [U] F:68 [THR] A:2339 [U] ✔
1G:71 [THR] 1A:2325 [C] F:68 [THR] A:2340 [C] ✔
1G:132 [ASN] 1A:2315 [G] F:129 [THR] A:2330 [G] ✔
1G:132 [ASN] 1A:2316 [G] F:129 [THR] A:2331 [G] ✔
1G:125 [PHE] 1A:2314 [G] F:122 [PHE] A:2329 [U] ✔
1G:74 [LYS] 1A:2324 [U] F:71 [LYS] A:2339 [U] ✔
1G:42 [GLY] 1A:2317 [A] F:40 [VAL] A:2332 [U] ✔
1G:42 [GLY] 1A:2318 [C] F:40 [VAL] A:2333 [U] ✔
1G:42 [GLY] 1A:2324 [U] F:40 [VAL] A:2339 [U] ✔
1G:126 [ASP] 1A:2314 [G] F:123 [ASP] A:2329 [U] ✔
1G:126 [ASP] 1A:2315 [G] F:123 [ASP] A:2330 [G] ✔
1G:91 [ARG] 1A:2325 [C] F:88 [LYS] A:2340 [C] ✔
1G:77 [ILE] 1A:2322 [A] F:74 [ILE] A:2337 [A] ✔
1G:77 [ILE] 1A:2323 [A] F:74 [ILE] A:2338 [A] ✔
1G:158 [ALA] 1A:2325 [C] F:155 [VAL] A:2340 [C] ✔
1G:158 [ALA] 1A:2326 [C] F:155 [VAL] A:2341 [A] ✔
1G:134 [GLY] 1A:2316 [G] F:131 [GLY] A:2331 [G] ✔
1G:134 [GLY] 1A:2317 [A] F:131 [GLY] A:2332 [U] ✔
1G:131 [TYR] 1A:2315 [G] F:128 [TYR] A:2330 [G] ✔
1G:135 [LEU] 1A:2317 [A] F:132 [VAL] A:2332 [U] ✔
1G:136 [ARG] 1A:2317 [A] F:133 [LYS] A:2332 [U] ✔
1G:133 [LEU] 1A:2316 [G] F:130 [LEU] A:2331 [G] ✔
1G:89 [GLY] 1A:2324 [U] F:86 [GLY] A:2339 [U] ✔
1G:123 [ASN] 1A:2315 [G] F:120 [LYS] A:2330 [G] ✔
1G:155 [MET] 1A:2317 [A] F:152 [MET] A:2332 [U] ✔
1G:72 [ARG] 1A:2324 [U] F:69 [LYS] A:2339 [U] ✔
1G:75 [LYS] 1A:2322 [A] F:72 [LYS] A:2337 [A] ❌ 7ASM_F_A
1G:75 [LYS] 1A:2323 [A] F:72 [LYS] A:2338 [A] ❌ 7ASM_F_A
1G:88 [ILE] 1A:2323 [A] F:85 [ILE] A:2338 [A] ❌ 7ASM_F_A
1G:73 [ALA] 1A:2323 [A] F:70 [ALA] A:2338 [A] ❌ 7ASM_F_A
1G:79 [ASN] 1A:2322 [A] F:76 [THR] A:2337 [A] ❌ 7ASM_F_A
1G:80 [PHE] 1A:2320 [G] F:77 [PHE] A:2335 [G] ❌ 7ASM_F_A
1G:80 [PHE] 1A:2322 [A] F:77 [PHE] A:2337 [A] ❌ 7ASM_F_A
1G:124 [SER] 1A:2316 [G] F:121 [ALA] A:2331 [G] ❌ 7ASM_F_A
1G:132 [ASN] 1A:2314 [G] F:129 [THR] A:2329 [U] ❌ 7ASM_F_A
1G:132 [ASN] 1A:2325 [C] F:129 [THR] A:2340 [C] ❌ 7ASM_F_A
1G:132 [ASN] 1A:2326 [C] F:129 [THR] A:2341 [A] ❌ 7ASM_F_A
1G:125 [PHE] 1A:2315 [G] F:122 [PHE] A:2330 [G] ❌ 7ASM_F_A
1G:40 [ASN] 1A:2316 [G] F:38 [MET] A:2331 [G] ❌ 7ASM_F_A
1G:40 [ASN] 1A:2324 [U] F:38 [MET] A:2339 [U] ❌ 7ASM_F_A
1G:40 [ASN] 1A:2325 [C] F:38 [MET] A:2340 [C] ❌ 7ASM_F_A
1G:42 [GLY] 1A:2323 [A] F:40 [VAL] A:2338 [A] ❌ 7ASM_F_A
1G:126 [ASP] 1A:2326 [C] F:123 [ASP] A:2341 [A] ❌ 7ASM_F_A
1G:126 [ASP] 1A:2327 [G] F:123 [ASP] A:2342 [U] ❌ 7ASM_F_A
1G:91 [ARG] 1A:2326 [C] F:88 [LYS] A:2341 [A] ❌ 7ASM_F_A
1G:123 [ASN] 1A:2316 [G] F:120 [LYS] A:2331 [G] ❌ 7ASM_F_A
1G:155 [MET] 1A:2316 [G] F:152 [MET] A:2331 [G] ❌ 7ASM_F_A
1G:40 [ASN] 1A:2317 [A] F:38 [MET] A:2332 [U] ❌ 4Y4O_1G_1A
1G:79 [ASN] 1A:2320 [G] F:76 [THR] A:2335 [G] ❌ 4Y4O_1G_1A
1G:128 [ARG] 1A:2328 [C] F:125 [ARG] A:2343 [U] ❌ 7ASM_A:2343 no longer at interface
1G:79 [ASN] 1A:2321 [A] F:76 [THR] A:2336 [A] ❌ 7ASM_A:2336 no longer at interface
1G:44 [GLY] 1A:2319 [G] F:42 [ASP] A:2334 [G] ❌ 7ASM_A:2334 no longer at interface
1G:42 [GLY] 1A:2319 [G] F:40 [VAL] A:2334 [G] ❌ 7ASM_A:2334 no longer at interface
1G:45 [GLU] 1A:2319 [G] F:43 [ALA] A:2334 [G] ❌ 7ASM_F:43, 7ASM_A:2334 no longer at interface
1G:43 [LEU] 1A:2319 [G] F:41 [GLY] A:2334 [G] ❌ 7ASM_F:41, 7ASM_A:2334 no longer at interface
1G:157 [ILE] 1A:2316 [G] F:154 [ILE] A:2331 [G] ❌ 7ASM_F:154 no longer at interface
1G:121 [ASN] 1A:2316 [G] F:118 [SER] A:2331 [G] ❌ 7ASM_F:118 no longer at interface
1G:156 [ASP] 1A:2316 [G] F:153 [ASP] A:2331 [G] ❌ 7ASM_F:153 no longer at interface
1G:156 [ASP] 1A:2317 [A] F:153 [ASP] A:2332 [U] ❌ 7ASM_F:153 no longer at interface
1G:156 [ASP] 1A:2324 [U] F:153 [ASP] A:2339 [U] ❌ 7ASM_F:153 no longer at interface
1G:156 [ASP] 1A:2325 [C] F:153 [ASP] A:2340 [C] ❌ 7ASM_F:153 no longer at interface
1G:36 [LYS] 1A:2326 [C] F:34 [ILE] A:2341 [A] ❌ 7ASM_F:34 no longer at interface
1G:36 [LYS] 1A:2327 [G] F:34 [ILE] A:2342 [U] ❌ 7ASM_F:34 no longer at interface
1G:154 [GLY] 1A:2317 [A] F:150 [ARG] A:2332 [U] ❌ 7ASM_F:150 no longer at interface
1G:38 [VAL] 1A:2325 [C] F:36 [VAL] A:2340 [C] ❌ 7ASM_F:36 no longer at interface
1G:38 [VAL] 1A:2326 [C] F:36 [VAL] A:2341 [A] ❌ 7ASM_F:36 no longer at interface
1G:152 [LEU] 1A:2317 [A] F:148 [LYS] A:2332 [U] ❌ 7ASM_F:148 no longer at interface
1G:90 [LEU] 1A:2324 [U] F:87 [ALA] A:2339 [U] ❌ 7ASM_F:87 no longer at interface
1G:153 [ARG] 1A:2317 [A] F:149 [VAL] A:2332 [U] ❌ 7ASM_F:149 no longer at interface
1G:130 [ASN] 1A:2315 [G] F:127 [ASN] A:2330 [G] ❌ 7ASM_F:127 no longer at interface
1G:130 [ASN] 1A:2326 [C] F:127 [ASN] A:2341 [A] ❌ 7ASM_F:127 no longer at interface
1G:130 [ASN] 1A:2327 [G] F:127 [ASN] A:2342 [U] ❌ 7ASM_F:127 no longer at interface
1G:47 [LYS] 1A:2323 [A] F:44 [VAL] A:2338 [A] ❌ 7ASM_F:44 no longer at interface
1G:160 [VAL] 1A:2326 [C] F:157 [VAL] A:2341 [A] ❌ 7ASM_F:157 no longer at interface
1G:160 [VAL] 1A:2327 [G] F:157 [VAL] A:2342 [U] ❌ 7ASM_F:157 no longer at interface
1G:45 [GLU] 1A:2317 [A] F:43 [ALA] A:2332 [U] ❌ 7ASM_F:43 no longer at interface
1G:45 [GLU] 1A:2318 [C] F:43 [ALA] A:2333 [U] ❌ 7ASM_F:43 no longer at interface
1G:45 [GLU] 1A:2323 [A] F:43 [ALA] A:2338 [A] ❌ 7ASM_F:43 no longer at interface
1G:43 [LEU] 1A:2317 [A] F:41 [GLY] A:2332 [U] ❌ 7ASM_F:41 no longer at interface
1G:43 [LEU] 1A:2318 [C] F:41 [GLY] A:2333 [U] ❌ 7ASM_F:41 no longer at interface
1G:43 [LEU] 1A:2323 [A] F:41 [GLY] A:2338 [A] ❌ 7ASM_F:41 no longer at interface
1G:37 [VAL] 1A:2326 [C] F:35 [VAL] A:2341 [A] ❌ 4Y4O_1G:37 no longer at interface
1G:37 [VAL] 1A:2325 [C] F:35 [VAL] A:2340 [C] ❌ 4Y4O_1G:37 no longer at interface
1G:78 [SER] 1A:2320 [G] F:75 [ALA] A:2335 [G] ❌ 4Y4O_1G:78 no longer at interface
1G:78 [SER] 1A:2322 [A] F:75 [ALA] A:2337 [A] ❌ 4Y4O_1G:78 no longer at interface
1G:81 [LYS] 1A:2323 [A] F:78 [ARG] A:2338 [A] ❌ 4Y4O_1G:81 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 Bacterial large subunit ribosomal RNA 0.95 3.56 0.49 0.88 0.95 0.89 1.0 0.41 0.34 0.05 0.62


Other pairs involving 4Y4O_1G_1A or 7ASM_F_A

Total number of entries: 16

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 6AZ3_D_2 0.74 0.83 2.7 0.27 Ribosomal protein L5 compare
4Y4O_1G_1A 7RYG_F_A 0.78 0.96 3.49 0.53 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
4Y4O_1G_1A 7ASM_F_A 0.41 0.95 3.56 0.49 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
4Y4O_1G_1A 6S0Z_F_A 0.67 0.96 1.7 0.57 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
4Y4O_1G_1A 7O7Y_BJ_B5 0.48 0.89 4.25 0.09 Ribosomal protein L5 compare
4Y4O_1G_1A 7K00_f_a 0.92 0.97 1.89 0.55 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7RYG_F_A 0.34 0.97 2.92 0.21 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7K00_f_a 0.34 0.96 3.21 0.11 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7O7Y_BJ_B5 0.34 0.89 4.56 0.14 Ribosomal protein L5 compare
6AZ3_D_2 7ASM_F_A 0.36 0.82 3.6 0.06 Ribosomal protein L5 compare
1VQ8_D_0 4Y4O_1G_1A 0.75 0.93 3.28 0.21 Ribosomal protein L5 compare
1VQ8_D_0 7ASM_F_A 0.45 0.91 3.35 0.31 Ribosomal protein L5 compare
1MJI_A_C 7ASM_F_A 0.39 0.7 1.49 0.17 Ribosomal protein L5 compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
6S0Z_F_A 7ASM_F_A 0.57 0.98 2.05 0.88 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare