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All interfaces > All interologs > Interface groups > group133 > 4Y4O_1G_1A vs 7K00_f_a

Interface analysis


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Common contacts -

4Y4O_1G
4Y4O_1A
7K00_f
7K00_a
Conserved?
1G:157 [ILE] 1A:2316 [G] f:154 [ILE] a:2304 [G] ✔
1G:75 [LYS] 1A:2324 [U] f:72 [LYS] a:2312 [U] ✔
1G:88 [ILE] 1A:2323 [A] f:85 [ILE] a:2311 [A] ✔
1G:88 [ILE] 1A:2324 [U] f:85 [ILE] a:2312 [U] ✔
1G:128 [ARG] 1A:2327 [G] f:125 [ARG] a:2315 [G] ✔
1G:128 [ARG] 1A:2328 [C] f:125 [ARG] a:2316 [G] ✔
1G:156 [ASP] 1A:2316 [G] f:153 [ASP] a:2304 [G] ✔
1G:156 [ASP] 1A:2317 [A] f:153 [ASP] a:2305 [U] ✔
1G:156 [ASP] 1A:2324 [U] f:153 [ASP] a:2312 [U] ✔
1G:156 [ASP] 1A:2325 [C] f:153 [ASP] a:2313 [C] ✔
1G:73 [ALA] 1A:2323 [A] f:70 [ALA] a:2311 [A] ✔
1G:73 [ALA] 1A:2324 [U] f:70 [ALA] a:2312 [U] ✔
1G:36 [LYS] 1A:2326 [C] f:33 [LYS] a:2314 [A] ✔
1G:36 [LYS] 1A:2327 [G] f:33 [LYS] a:2315 [G] ✔
1G:154 [GLY] 1A:2317 [A] f:151 [GLY] a:2305 [U] ✔
1G:79 [ASN] 1A:2321 [A] f:76 [GLY] a:2309 [A] ✔
1G:79 [ASN] 1A:2322 [A] f:76 [GLY] a:2310 [C] ✔
1G:38 [VAL] 1A:2325 [C] f:35 [THR] a:2313 [C] ✔
1G:38 [VAL] 1A:2326 [C] f:35 [THR] a:2314 [A] ✔
1G:80 [PHE] 1A:2320 [G] f:77 [PHE] a:2308 [G] ✔
1G:80 [PHE] 1A:2322 [A] f:77 [PHE] a:2310 [C] ✔
1G:80 [PHE] 1A:2323 [A] f:77 [PHE] a:2311 [A] ✔
1G:127 [GLY] 1A:2314 [G] f:124 [GLY] a:2302 [U] ✔
1G:44 [GLY] 1A:2319 [G] f:41 [GLY] a:2307 [G] ✔
1G:44 [GLY] 1A:2323 [A] f:41 [GLY] a:2311 [A] ✔
1G:124 [SER] 1A:2315 [G] f:121 [SER] a:2303 [G] ✔
1G:124 [SER] 1A:2316 [G] f:121 [SER] a:2304 [G] ✔
1G:82 [LEU] 1A:2323 [A] f:79 [ILE] a:2311 [A] ✔
1G:41 [GLN] 1A:2317 [A] f:38 [MET] a:2305 [U] ✔
1G:41 [GLN] 1A:2324 [U] f:38 [MET] a:2312 [U] ✔
1G:71 [THR] 1A:2324 [U] f:68 [THR] a:2312 [U] ✔
1G:71 [THR] 1A:2325 [C] f:68 [THR] a:2313 [C] ✔
1G:90 [LEU] 1A:2324 [U] f:87 [CYS] a:2312 [U] ✔
1G:132 [ASN] 1A:2315 [G] f:129 [SER] a:2303 [G] ✔
1G:132 [ASN] 1A:2316 [G] f:129 [SER] a:2304 [G] ✔
1G:125 [PHE] 1A:2314 [G] f:122 [PHE] a:2302 [U] ✔
1G:125 [PHE] 1A:2315 [G] f:122 [PHE] a:2303 [G] ✔
1G:74 [LYS] 1A:2324 [U] f:71 [ARG] a:2312 [U] ✔
1G:153 [ARG] 1A:2317 [A] f:150 [ARG] a:2305 [U] ✔
1G:40 [ASN] 1A:2316 [G] f:37 [ASN] a:2304 [G] ✔
1G:40 [ASN] 1A:2324 [U] f:37 [ASN] a:2312 [U] ✔
1G:40 [ASN] 1A:2325 [C] f:37 [ASN] a:2313 [C] ✔
1G:42 [GLY] 1A:2317 [A] f:39 [GLY] a:2305 [U] ✔
1G:42 [GLY] 1A:2318 [C] f:39 [GLY] a:2306 [C] ✔
1G:42 [GLY] 1A:2319 [G] f:39 [GLY] a:2307 [G] ✔
1G:42 [GLY] 1A:2324 [U] f:39 [GLY] a:2312 [U] ✔
1G:130 [ASN] 1A:2315 [G] f:127 [ASN] a:2303 [G] ✔
1G:130 [ASN] 1A:2326 [C] f:127 [ASN] a:2314 [A] ✔
1G:130 [ASN] 1A:2327 [G] f:127 [ASN] a:2315 [G] ✔
1G:47 [LYS] 1A:2323 [A] f:44 [ILE] a:2311 [A] ✔
1G:126 [ASP] 1A:2314 [G] f:123 [ASP] a:2302 [U] ✔
1G:126 [ASP] 1A:2315 [G] f:123 [ASP] a:2303 [G] ✔
1G:126 [ASP] 1A:2326 [C] f:123 [ASP] a:2314 [A] ✔
1G:126 [ASP] 1A:2327 [G] f:123 [ASP] a:2315 [G] ✔
1G:91 [ARG] 1A:2325 [C] f:88 [LYS] a:2313 [C] ✔
1G:91 [ARG] 1A:2326 [C] f:88 [LYS] a:2314 [A] ✔
1G:77 [ILE] 1A:2322 [A] f:74 [VAL] a:2310 [C] ✔
1G:77 [ILE] 1A:2323 [A] f:74 [VAL] a:2311 [A] ✔
1G:158 [ALA] 1A:2325 [C] f:155 [THR] a:2313 [C] ✔
1G:158 [ALA] 1A:2326 [C] f:155 [THR] a:2314 [A] ✔
1G:134 [GLY] 1A:2316 [G] f:131 [GLY] a:2304 [G] ✔
1G:134 [GLY] 1A:2317 [A] f:131 [GLY] a:2305 [U] ✔
1G:135 [LEU] 1A:2317 [A] f:132 [VAL] a:2305 [U] ✔
1G:136 [ARG] 1A:2317 [A] f:133 [ARG] a:2305 [U] ✔
1G:133 [LEU] 1A:2316 [G] f:130 [MET] a:2304 [G] ✔
1G:160 [VAL] 1A:2326 [C] f:157 [THR] a:2314 [A] ✔
1G:160 [VAL] 1A:2327 [G] f:157 [THR] a:2315 [G] ✔
1G:89 [GLY] 1A:2324 [U] f:86 [GLY] a:2312 [U] ✔
1G:123 [ASN] 1A:2315 [G] f:120 [LYS] a:2303 [G] ✔
1G:123 [ASN] 1A:2316 [G] f:120 [LYS] a:2304 [G] ✔
1G:45 [GLU] 1A:2318 [C] f:42 [GLU] a:2306 [C] ✔
1G:45 [GLU] 1A:2319 [G] f:42 [GLU] a:2307 [G] ✔
1G:45 [GLU] 1A:2323 [A] f:42 [GLU] a:2311 [A] ✔
1G:155 [MET] 1A:2317 [A] f:152 [LEU] a:2305 [U] ✔
1G:72 [ARG] 1A:2324 [U] f:69 [LYS] a:2312 [U] ✔
1G:43 [LEU] 1A:2319 [G] f:40 [VAL] a:2307 [G] ✔
1G:75 [LYS] 1A:2322 [A] f:72 [LYS] a:2310 [C] ❌ 7K00_f_a
1G:75 [LYS] 1A:2323 [A] f:72 [LYS] a:2311 [A] ❌ 7K00_f_a
1G:132 [ASN] 1A:2314 [G] f:129 [SER] a:2302 [U] ❌ 7K00_f_a
1G:132 [ASN] 1A:2325 [C] f:129 [SER] a:2313 [C] ❌ 7K00_f_a
1G:132 [ASN] 1A:2326 [C] f:129 [SER] a:2314 [A] ❌ 7K00_f_a
1G:42 [GLY] 1A:2323 [A] f:39 [GLY] a:2311 [A] ❌ 7K00_f_a
1G:45 [GLU] 1A:2317 [A] f:42 [GLU] a:2305 [U] ❌ 7K00_f_a
1G:155 [MET] 1A:2316 [G] f:152 [LEU] a:2304 [G] ❌ 7K00_f_a
1G:43 [LEU] 1A:2317 [A] f:40 [VAL] a:2305 [U] ❌ 7K00_f_a
1G:43 [LEU] 1A:2318 [C] f:40 [VAL] a:2306 [C] ❌ 7K00_f_a
1G:43 [LEU] 1A:2323 [A] f:40 [VAL] a:2311 [A] ❌ 7K00_f_a
1G:133 [LEU] 1A:2317 [A] f:130 [MET] a:2305 [U] ❌ 4Y4O_1G_1A
1G:158 [ALA] 1A:2315 [G] f:155 [THR] a:2303 [G] ❌ 4Y4O_1G_1A
1G:40 [ASN] 1A:2317 [A] f:37 [ASN] a:2305 [U] ❌ 4Y4O_1G_1A
1G:74 [LYS] 1A:2323 [A] f:71 [ARG] a:2311 [A] ❌ 4Y4O_1G_1A
1G:74 [LYS] 1A:2311 [G] f:71 [ARG] a:2299 [U] ❌ 4Y4O_1A:2311 no longer at interface
1G:74 [LYS] 1A:2310 [A] f:71 [ARG] a:2298 [A] ❌ 4Y4O_1A:2310 no longer at interface
1G:75 [LYS] 1A:2312 [G] f:72 [LYS] a:2300 [C] ❌ 4Y4O_1A:2312 no longer at interface
1G:75 [LYS] 1A:2311 [G] f:72 [LYS] a:2299 [U] ❌ 4Y4O_1A:2311 no longer at interface
1G:75 [LYS] 1A:2310 [A] f:72 [LYS] a:2298 [A] ❌ 4Y4O_1A:2310 no longer at interface
1G:39 [ILE] 1A:2325 [C] f:36 [LEU] a:2313 [C] ❌ 7K00_f:36 no longer at interface
1G:121 [ASN] 1A:2316 [G] f:118 [SER] a:2304 [G] ❌ 7K00_f:118 no longer at interface
1G:152 [LEU] 1A:2317 [A] f:149 [VAL] a:2305 [U] ❌ 7K00_f:149 no longer at interface
1G:131 [TYR] 1A:2315 [G] f:128 [TYR] a:2303 [G] ❌ 7K00_f:128 no longer at interface
1G:35 [GLU] 1A:2327 [G] f:32 [GLU] a:2315 [G] ❌ 4Y4O_1G:35 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 Bacterial large subunit ribosomal RNA 0.97 1.89 0.55 0.96 0.96 0.98 1.0 0.92 0.93 0.32 0.40


Other pairs involving 4Y4O_1G_1A or 7K00_f_a

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 6AZ3_D_2 0.74 0.83 2.7 0.27 Ribosomal protein L5 compare
4Y4O_1G_1A 7RYG_F_A 0.78 0.96 3.49 0.53 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
4Y4O_1G_1A 7ASM_F_A 0.41 0.95 3.56 0.49 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
4Y4O_1G_1A 6S0Z_F_A 0.67 0.96 1.7 0.57 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
4Y4O_1G_1A 7O7Y_BJ_B5 0.48 0.89 4.25 0.09 Ribosomal protein L5 compare
4Y4O_1G_1A 7K00_f_a 0.92 0.97 1.89 0.55 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7K00_f_a 0.34 0.96 3.21 0.11 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
6AZ3_D_2 7K00_f_a 0.79 0.83 2.15 0.24 Ribosomal protein L5 compare
7K00_f_a 7O7Y_BJ_B5 0.84 0.89 3.13 0.33 Ribosomal protein L5 compare
7K00_f_a 7RYG_F_A 0.83 0.99 3.23 0.76 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
1VQ8_D_0 4Y4O_1G_1A 0.75 0.93 3.28 0.21 Ribosomal protein L5 compare
1VQ8_D_0 7K00_f_a 0.35 0.9 3.47 0.08 Ribosomal protein L5 compare
1YHQ_D_0 4Y4O_1G_1A 0.73 0.93 3.03 0.22 Ribosomal protein L5 compare
1YHQ_D_0 7K00_f_a 0.40 0.9 3.5 0.14 Ribosomal protein L5 compare
6S0Z_F_A 7K00_f_a 0.59 0.97 2.39 0.52 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare