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All interfaces > All interologs > Interface groups > group133 > 5NS3_A_C

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

5NS3_A
5NS3_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:36 [LYS] C:29 [A] 4.28 C:55 [U] 98.61
A:36 [LYS] C:30 [C] 2.8 C:54 [G] 98.61
A:38 [VAL] C:28 [C] 4.47 C:56 [G] 86.28
A:38 [VAL] C:29 [A] 3.78 C:55 [U] 86.28
A:40 [ASN] C:27 [G] 3.63 C:57 [C] 91.49
A:40 [ASN] C:28 [C] 3.56 C:56 [G] 91.49
A:71 [THR] C:28 [C] 4.97 C:56 [G] 73.88
A:88 [ILE] C:27 [G] 4.79 C:57 [C] 77.59
A:91 [ARG] C:28 [C] 3.7 C:56 [G] 48.75
A:91 [ARG] C:29 [A] 3.69 C:55 [U] 48.75
A:121 [ASN] C:57 [C] 4.51 C:27 [G] 64.92
A:123 [ASN] C:56 [G] 4.08 C:28 [C] 44.42
A:123 [ASN] C:57 [C] 4.62 C:27 [G] 44.42
A:124 [SER] C:56 [G] 2.84 C:28 [C] 64.18
A:124 [SER] C:57 [C] 3.27 C:27 [G] 64.18
A:125 [PHE] C:55 [U] 4.72 C:29 [A] 78.78
A:125 [PHE] C:56 [G] 3.13 C:28 [C] 78.78
A:126 [ASP] C:29 [A] 4.5 C:55 [U] 98.72
A:126 [ASP] C:30 [C] 3.3 C:54 [G] 98.72
A:126 [ASP] C:55 [U] 2.75 C:29 [A] 98.72
A:126 [ASP] C:56 [G] 3.32 C:28 [C] 98.72
A:127 [GLY] C:55 [U] 3.93 C:29 [A] 26.12
A:127 [GLY] C:56 [G] 4.97 C:28 [C] 26.12
A:128 [ARG] C:30 [C] 3.38 C:54 [G] 25.9
A:128 [ARG] C:31 [C] 3.75 C:51 [G] 25.9
A:128 [ARG] C:32 [U] 4.87 C:50 [A] 25.9
A:130 [ASN] C:29 [A] 4.85 C:55 [U] 95.22
A:130 [ASN] C:30 [C] 3.55 C:54 [G] sugar:SC 95.22
A:132 [ASN] C:29 [A] 4.13 C:55 [U] 75.82
A:132 [ASN] C:56 [G] 2.58 C:28 [C] sugar:SC 75.82
A:132 [ASN] C:57 [C] 3.51 C:27 [G] 75.82
A:133 [LEU] C:57 [C] 3.74 C:27 [G] 48.17
A:134 [GLY] C:57 [C] 3.25 C:27 [G] 93.17
A:134 [GLY] C:58 [G] 3.89 C:26 [C] 93.17
A:154 [GLY] C:58 [G] 4.35 C:26 [C] 83.7
A:156 [ASP] C:27 [G] 2.68 C:57 [C] base:SC 60.12
A:156 [ASP] C:28 [C] 4.2 C:56 [G] 60.12
A:156 [ASP] C:57 [C] 4.48 C:27 [G] 60.12
A:156 [ASP] C:58 [G] 3.72 C:26 [C] 60.12
A:158 [ALA] C:29 [A] 3.43 C:55 [U] 79.01
A:160 [VAL] C:29 [A] 3.77 C:55 [U] 78.57
A:160 [VAL] C:30 [C] 4.53 C:54 [G] 78.57

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group133 5NS3_A_C A: 50s ribosomal protein l5, Thermus thermophilus (genetically engineered) C: Double-stranded RNA, Thermus thermophilus (synthetic) P41201 Ribosomal protein L5 ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5NS3_A_C 7O7Y_BJ_B5 0.60 0.66 1.88 0.3 Ribosomal protein L5 compare
5NS3_A_C 5NS4_A_C 0.99 0.97 0.23 0.9 Ribosomal protein L5 compare
5NS3_A_C 6AZ3_D_2 0.54 0.65 1.87 0.2 Ribosomal protein L5 compare
1YHQ_D_0 5NS3_A_C 0.68 0.64 1.27 0.1 Ribosomal protein L5 compare
1VQ8_D_0 5NS3_A_C 0.70 0.64 1.28 0.1 Ribosomal protein L5 compare
1MJI_A_C 5NS3_A_C 0.98 0.98 0.47 0.8 Ribosomal protein L5 compare