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All interfaces > All interologs > Interface groups > group133 > 5NS4_A_C

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

5NS4_A
5NS4_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:36 [LYS] C:29 [A] 4.18 C:55 [U] 97.18
A:36 [LYS] C:30 [C] 2.75 C:54 [G] 97.18
A:38 [VAL] C:28 [C] 4.12 C:56 [G] 85.34
A:38 [VAL] C:29 [A] 3.74 C:55 [U] 85.34
A:40 [ASN] C:27 [G] 3.19 C:57 [C] sugar:SC 89.7
A:40 [ASN] C:28 [C] 3.45 C:56 [G] 89.7
A:71 [THR] C:28 [C] 4.38 C:56 [G] 80.94
A:88 [ILE] C:27 [G] 3.58 C:57 [C] 76.79
A:91 [ARG] C:28 [C] 3.85 C:56 [G] 52.44
A:91 [ARG] C:29 [A] 2.85 C:55 [U] 52.44
A:91 [ARG] C:48 [U] 4.8 C:34 [A] 52.44
A:121 [ASN] C:57 [C] 4.87 C:27 [G] 59.9
A:123 [ASN] C:56 [G] 4.18 C:28 [C] 51.85
A:123 [ASN] C:57 [C] 4.54 C:27 [G] 51.85
A:124 [SER] C:56 [G] 2.96 C:28 [C] 68.75
A:124 [SER] C:57 [C] 3.2 C:27 [G] 68.75
A:125 [PHE] C:55 [U] 4.9 C:29 [A] 81.39
A:125 [PHE] C:56 [G] 3.15 C:28 [C] 81.39
A:126 [ASP] C:29 [A] 4.63 C:55 [U] 98.22
A:126 [ASP] C:30 [C] 3.38 C:54 [G] 98.22
A:126 [ASP] C:55 [U] 2.62 C:29 [A] 98.22
A:126 [ASP] C:56 [G] 3.26 C:28 [C] 98.22
A:127 [GLY] C:55 [U] 4.05 C:29 [A] 39.32
A:127 [GLY] C:56 [G] 4.96 C:28 [C] 39.32
A:128 [ARG] C:30 [C] 3.4 C:54 [G] 37.29
A:128 [ARG] C:31 [C] 3.66 C:51 [G] 37.29
A:128 [ARG] C:32 [U] 4.82 C:50 [A] 37.29
A:130 [ASN] C:29 [A] 4.84 C:55 [U] 95.47
A:130 [ASN] C:30 [C] 3.58 C:54 [G] sugar:SC 95.47
A:132 [ASN] C:29 [A] 4.26 C:55 [U] 76.1
A:132 [ASN] C:56 [G] 2.92 C:28 [C] sugar:SC 76.1
A:132 [ASN] C:57 [C] 3.45 C:27 [G] 76.1
A:133 [LEU] C:57 [C] 3.57 C:27 [G] 43.57
A:134 [GLY] C:57 [C] 2.93 C:27 [G] 94.9
A:134 [GLY] C:58 [A] 3.69 C:26 [U] 94.9
A:135 [LEU] C:58 [A] 4.9 C:26 [U] 64.15
A:136 [ARG] C:58 [A] 3.19 C:26 [U] sugar:SC 54.78
A:154 [GLY] C:58 [A] 4.54 C:26 [U] 87.82
A:156 [ASP] C:27 [G] 3.07 C:57 [C] base:SC 63.66
A:156 [ASP] C:28 [C] 4.68 C:56 [G] 63.66
A:156 [ASP] C:57 [C] 4.23 C:27 [G] 63.66
A:156 [ASP] C:58 [A] 3.54 C:26 [U] 63.66
A:158 [ALA] C:29 [A] 3.54 C:55 [U] 81.47
A:160 [VAL] C:29 [A] 3.53 C:55 [U] 78.86
A:160 [VAL] C:30 [C] 4.45 C:54 [G] 78.86

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group133 5NS4_A_C A: 50s ribosomal protein l5, Thermus thermophilus (genetically engineered) C: RNA (34-mer), Thermus thermophilus (genetically engineered) P41201 Ribosomal protein L5 ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5NS3_A_C 5NS4_A_C 0.99 0.97 0.23 0.9 Ribosomal protein L5 compare
1MJI_A_C 5NS4_A_C 0.94 0.98 0.49 0.82 Ribosomal protein L5 compare
1VQ8_D_0 5NS4_A_C 0.72 0.64 1.29 0.09 Ribosomal protein L5 compare
1YHQ_D_0 5NS4_A_C 0.72 0.65 1.31 0.09 Ribosomal protein L5 compare
5NS4_A_C 6AZ3_D_2 0.56 0.67 1.9 0.18 Ribosomal protein L5 compare
5NS4_A_C 7O7Y_BJ_B5 0.64 0.68 1.95 0.27 Ribosomal protein L5 compare