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All interfaces > All interologs > Interface groups > group133 > 6AZ3_D_2

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Licorice
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_D
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
D:18 [LYS] 2:1111 [U] 3.41 2:1099 [G] 97.53
D:18 [LYS] 2:1112 [C] 2.44 2:1098 [G] 97.53
D:20 [CYS] 2:1110 [C] 3.51 2:1100 [G] 68.98
D:20 [CYS] 2:1111 [U] 3.55 2:1099 [G] 68.98
D:22 [ASN] 2:1101 [A] 4.09 2:1109 [U] 91.77
D:22 [ASN] 2:1109 [U] 3.52 2:1101 [A] base:SC, sugar:SC 91.77
D:22 [ASN] 2:1110 [C] 3.2 2:1100 [G] 91.77
D:23 [ILE] 2:1109 [U] 4.8 2:1101 [A] 73.83
D:24 [CYS] 2:1103 [C] 3.54 76.4
D:24 [CYS] 2:1104 [A] 3.19 base:BB 76.4
D:24 [CYS] 2:1108 [A] 3.65 76.4
D:24 [CYS] 2:1109 [U] 3.66 2:1101 [A] 76.4
D:25 [VAL] 2:1104 [A] 3.92 69.81
D:26 [GLY] 2:1104 [A] 4.7 92.18
D:26 [GLY] 2:1108 [A] 4.04 92.18
D:50 [SER] 2:1109 [U] 2.68 2:1101 [A] 82.67
D:50 [SER] 2:1110 [C] 3.22 2:1100 [G] 82.67
D:51 [ARG] 2:1109 [U] 3.33 2:1101 [A] 0.76
D:52 [ALA] 2:1109 [U] 3.32 2:1101 [A] 80.48
D:53 [ARG] 2:1109 [U] 2.69 2:1101 [A] 61.68
D:53 [ARG] 2:1110 [C] 4.24 2:1100 [G] 61.68
D:54 [LEU] 2:1109 [U] 4.45 2:1101 [A] 44.5
D:56 [VAL] 2:1107 [A] 3.73 62.22
D:56 [VAL] 2:1108 [A] 4.55 62.22
D:58 [THR] 2:1107 [A] 3.44 56.26
D:59 [PHE] 2:1105 [G] 3.29 65.58
D:59 [PHE] 2:1107 [A] 3.39 base/AA stacks 65.58
D:59 [PHE] 2:1108 [A] 3.51 base/AA stacks 65.58
D:61 [ILE] 2:1108 [A] 4.28 75.49
D:68 [ALA] 2:1109 [U] 3.34 2:1101 [A] 85.89
D:70 [HIS] 2:1110 [C] 3.56 2:1100 [G] 58.38
D:70 [HIS] 2:1111 [U] 4.42 2:1099 [G] 58.38
D:72 [THR] 2:1111 [U] 4.36 2:1099 [G] 99.0
D:89 [LYS] 2:1102 [A] 4.77 11.19
D:96 [TYR] 2:1100 [G] 3.23 2:1110 [C] 32.34
D:96 [TYR] 2:1101 [A] 2.98 2:1109 [U] 32.34
D:97 [ASN] 2:1100 [G] 3.3 2:1110 [C] 70.15
D:97 [ASN] 2:1101 [A] 3.05 2:1109 [U] 70.15
D:97 [ASN] 2:1102 [A] 4.13 70.15
D:98 [PHE] 2:1100 [G] 4.07 2:1110 [C] 77.0
D:99 [SER] 2:1099 [G] 2.82 2:1111 [U] base:SC, base:SC, sugar:SC 88.61
D:99 [SER] 2:1100 [G] 3.59 2:1110 [C] 88.61
D:100 [ASP] 2:1099 [G] 2.52 2:1111 [U] sugar:BB 21.28
D:101 [THR] 2:1098 [G] 4.17 2:1112 [C] 3.16
D:101 [THR] 2:1099 [G] 3.38 2:1111 [U] base:SC 3.16
D:101 [THR] 2:1112 [C] 3.58 2:1098 [G] 3.16
D:101 [THR] 2:1113 [A] 4.57 2:1097 [U] 3.16
D:103 [SER] 2:1099 [G] 3.99 2:1111 [U] 87.2
D:103 [SER] 2:1100 [G] 4.47 2:1110 [C] 87.2
D:103 [SER] 2:1111 [U] 4.91 2:1099 [G] 87.2
D:104 [PHE] 2:1100 [G] 4.51 2:1110 [C] 42.33
D:105 [GLY] 2:1100 [G] 4.75 2:1110 [C] 82.27
D:105 [GLY] 2:1101 [A] 3.6 2:1109 [U] 82.27
D:106 [PHE] 2:1101 [A] 3.36 2:1109 [U] 84.83
D:106 [PHE] 2:1102 [A] 4.52 84.83
D:107 [GLY] 2:1101 [A] 3.42 2:1109 [U] 97.46
D:107 [GLY] 2:1102 [A] 3.34 97.46
D:108 [ILE] 2:1102 [A] 3.31 84.46
D:109 [ASP] 2:1102 [A] 2.72 sugar:SC 34.6
D:125 [TYR] 2:1102 [A] 4.93 31.81
D:126 [GLY] 2:1102 [A] 3.03 base:BB 96.14
D:127 [MET] 2:1102 [A] 3.4 62.24
D:128 [ASP] 2:1101 [A] 3.23 2:1109 [U] 79.62
D:128 [ASP] 2:1102 [A] 3.39 79.62
D:129 [PHE] 2:1101 [A] 4.19 2:1109 [U] 88.03
D:130 [TYR] 2:1099 [G] 2.88 2:1111 [U] 39.87
D:130 [TYR] 2:1100 [G] 3.42 2:1110 [C] sugar:SC 39.87
D:130 [TYR] 2:1101 [A] 3.75 2:1109 [U] 39.87
D:130 [TYR] 2:1111 [U] 3.33 2:1099 [G] 39.87
D:132 [VAL] 2:1111 [U] 3.26 2:1099 [G] 60.26
D:132 [VAL] 2:1112 [C] 4.44 2:1098 [G] 60.26
D:138 [GLU] 2:1113 [A] 4.87 2:1097 [U] 31.64
D:142 [HIS] 2:1113 [A] 4.2 2:1097 [U] 36.67
D:144 [LYS] 2:1091 [G] 2.77 2:1135 [C] 50.27
D:144 [LYS] 2:1092 [C] 3.64 2:1134 [G] 50.27
D:144 [LYS] 2:1131 [A] 3.15 50.27
D:149 [ARG] 2:1113 [A] 4.54 2:1097 [U] 58.06
D:149 [ARG] 2:1114 [C] 3.3 2:1096 [G] 58.06
D:149 [ARG] 2:1115 [G] 4.42 2:1095 [A] 58.06

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group133 6AZ3_D_2 D: 60s ribosomal protein l11 (l5, l16), Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3S5H5A8 Ribosomal protein L5 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 6AZ3_D_2 0.74 0.83 2.7 0.27 Ribosomal protein L5 compare
6AZ3_D_2 7RYG_F_A 0.53 0.81 3.21 0.21 Ribosomal protein L5 compare
6AZ3_D_2 7K00_f_a 0.79 0.83 2.15 0.24 Ribosomal protein L5 compare
6AZ3_D_2 6S0Z_F_A 0.39 0.82 3.19 0.12 Ribosomal protein L5 compare
6AZ3_D_2 7O7Y_BJ_B5 0.92 0.92 0.74 0.75 Ribosomal protein L5 Eukaryotic large subunit ribosomal RNA compare
6AZ3_D_2 7ASM_F_A 0.36 0.82 3.6 0.06 Ribosomal protein L5 compare
1VQ8_D_0 6AZ3_D_2 0.50 0.8 2.77 0.21 Ribosomal protein L5 compare
5NS3_A_C 6AZ3_D_2 0.54 0.65 1.87 0.2 Ribosomal protein L5 compare
5NS4_A_C 6AZ3_D_2 0.56 0.67 1.9 0.18 Ribosomal protein L5 compare
1YHQ_D_0 6AZ3_D_2 0.66 0.81 2.69 0.24 Ribosomal protein L5 compare