Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6S0Z_F
|
6S0Z_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| F:33 [LYS] | A:2341 [A] | 2.96 | A:2329 [U] | 83.03 | ||
| F:33 [LYS] | A:2342 [U] | 2.88 | A:2328 [A] | 83.03 | ||
| F:35 [VAL] | A:2340 [C] | 3.58 | A:2330 [G] | 69.06 | ||
| F:35 [VAL] | A:2341 [A] | 3.86 | A:2329 [U] | 69.06 | ||
| F:37 [ASN] | A:2340 [C] | 3.28 | A:2330 [G] | 82.41 | ||
| F:38 [MET] | A:2332 [U] | 3.15 | base:BB | 48.18 | ||
| F:39 [GLY] | A:2332 [U] | 3.41 | 69.49 | |||
| F:39 [GLY] | A:2333 [U] | 4.41 | 69.49 | |||
| F:39 [GLY] | A:2339 [U] | 4.7 | A:2331 [G] | 69.49 | ||
| F:40 [VAL] | A:2332 [U] | 4.31 | 54.5 | |||
| F:40 [VAL] | A:2333 [U] | 3.46 | base:BB | 54.5 | ||
| F:40 [VAL] | A:2335 [G] | 4.7 | 54.5 | |||
| F:40 [VAL] | A:2338 [A] | 3.79 | 54.5 | |||
| F:40 [VAL] | A:2339 [U] | 3.98 | A:2331 [G] | 54.5 | ||
| F:68 [THR] | A:2339 [U] | 3.57 | A:2331 [G] | sugar:SC | 73.47 | |
| F:68 [THR] | A:2340 [C] | 4.22 | A:2330 [G] | 73.47 | ||
| F:69 [LYS] | A:2339 [U] | 4.76 | A:2331 [G] | 51.31 | ||
| F:70 [ALA] | A:2339 [U] | 4.76 | A:2331 [G] | 85.24 | ||
| F:71 [LYS] | A:2339 [U] | 3.74 | A:2331 [G] | 75.65 | ||
| F:71 [LYS] | A:2340 [C] | 3.16 | A:2330 [G] | 75.65 | ||
| F:72 [LYS] | A:2339 [U] | 4.69 | A:2331 [G] | 68.77 | ||
| F:74 [ILE] | A:2337 [A] | 4.28 | 80.39 | |||
| F:74 [ILE] | A:2338 [A] | 3.29 | 80.39 | |||
| F:74 [ILE] | A:2339 [U] | 4.37 | A:2331 [G] | 80.39 | ||
| F:75 [ALA] | A:2338 [A] | 3.31 | 88.17 | |||
| F:76 [THR] | A:2337 [A] | 3.92 | base:SC | 49.2 | ||
| F:76 [THR] | A:2338 [A] | 3.2 | 49.2 | |||
| F:77 [PHE] | A:2338 [A] | 4.17 | 90.82 | |||
| F:85 [ILE] | A:2338 [A] | 4.99 | 66.6 | |||
| F:85 [ILE] | A:2339 [U] | 3.59 | A:2331 [G] | 66.6 | ||
| F:86 [GLY] | A:2339 [U] | 4.37 | A:2331 [G] | 83.82 | ||
| F:88 [LYS] | A:2340 [C] | 4.66 | A:2330 [G] | 65.0 | ||
| F:88 [LYS] | A:2341 [A] | 4.45 | A:2329 [U] | 65.0 | ||
| F:120 [LYS] | A:2331 [G] | 3.73 | A:2339 [U] | 46.65 | ||
| F:121 [ALA] | A:2330 [G] | 3.73 | A:2340 [C] | 70.3 | ||
| F:121 [ALA] | A:2331 [G] | 3.39 | A:2339 [U] | 70.3 | ||
| F:122 [PHE] | A:2329 [U] | 4.44 | A:2341 [A] | 56.34 | ||
| F:122 [PHE] | A:2330 [G] | 2.89 | A:2340 [C] | 56.34 | ||
| F:123 [ASP] | A:2329 [U] | 3.24 | A:2341 [A] | sugar:BB | 83.69 | |
| F:123 [ASP] | A:2330 [G] | 4.01 | A:2340 [C] | 83.69 | ||
| F:123 [ASP] | A:2342 [U] | 4.08 | A:2328 [A] | 83.69 | ||
| F:125 [ARG] | A:2342 [U] | 2.54 | A:2328 [A] | base:SC | 35.54 | |
| F:125 [ARG] | A:2343 [U] | 2.88 | A:2327 [A] | sugar:SC | 35.54 | |
| F:127 [ASN] | A:2341 [A] | 4.49 | A:2329 [U] | 87.51 | ||
| F:127 [ASN] | A:2342 [U] | 3.59 | A:2328 [A] | 87.51 | ||
| F:129 [THR] | A:2330 [G] | 3.93 | A:2340 [C] | 67.66 | ||
| F:129 [THR] | A:2331 [G] | 2.8 | A:2339 [U] | sugar:SC | 67.66 | |
| F:129 [THR] | A:2332 [U] | 4.86 | 67.66 | |||
| F:130 [LEU] | A:2331 [G] | 4.07 | A:2339 [U] | 58.45 | ||
| F:130 [LEU] | A:2332 [U] | 4.57 | 58.45 | |||
| F:131 [GLY] | A:2331 [G] | 3.76 | A:2339 [U] | 81.4 | ||
| F:131 [GLY] | A:2332 [U] | 3.28 | 81.4 | |||
| F:132 [VAL] | A:2332 [U] | 3.98 | 73.11 | |||
| F:151 [GLY] | A:2332 [U] | 2.93 | 95.43 | |||
| F:152 [MET] | A:2332 [U] | 3.24 | 43.51 | |||
| F:153 [ASP] | A:2330 [G] | 4.92 | A:2340 [C] | 67.12 | ||
| F:153 [ASP] | A:2331 [G] | 3.38 | A:2339 [U] | sugar:SC | 67.12 | |
| F:153 [ASP] | A:2332 [U] | 3.37 | 67.12 | |||
| F:153 [ASP] | A:2334 [G] | 4.17 | 67.12 | |||
| F:153 [ASP] | A:2340 [C] | 4.39 | A:2330 [G] | 67.12 | ||
| F:155 [VAL] | A:2330 [G] | 4.95 | A:2340 [C] | 73.13 | ||
| F:155 [VAL] | A:2340 [C] | 4.88 | A:2330 [G] | 73.13 | ||
| F:155 [VAL] | A:2341 [A] | 4.2 | A:2329 [U] | 73.13 | ||
| F:157 [VAL] | A:2341 [A] | 3.69 | A:2329 [U] | 45.02 | ||
| F:157 [VAL] | A:2342 [U] | 4.42 | A:2328 [A] | 45.02 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group133 | 6S0Z_F_A | F: 50s ribosomal protein l5, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) | W8TUC3 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 8
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1G_1A | 6S0Z_F_A | 0.67 | 0.96 | 1.7 | 0.57 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |
| 6AZ3_D_2 | 6S0Z_F_A | 0.39 | 0.82 | 3.19 | 0.12 | Ribosomal protein L5 | compare | |
| 1VQ8_D_0 | 6S0Z_F_A | 0.67 | 0.93 | 3.72 | 0.29 | Ribosomal protein L5 | compare | |
| 1YHQ_D_0 | 6S0Z_F_A | 0.68 | 0.93 | 3.49 | 0.29 | Ribosomal protein L5 | compare | |
| 6S0Z_F_A | 7K00_f_a | 0.59 | 0.97 | 2.39 | 0.52 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |
| 6S0Z_F_A | 7ASM_F_A | 0.57 | 0.98 | 2.05 | 0.88 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |
| 6S0Z_F_A | 7O7Y_BJ_B5 | 0.35 | 0.89 | 4.72 | 0.15 | Ribosomal protein L5 | compare | |
| 6S0Z_F_A | 7RYG_F_A | 0.59 | 0.97 | 3.23 | 0.48 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |