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All interfaces > All interologs > Interface groups > group133 > 7ASM_F_A

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7ASM_F
7ASM_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
F:35 [VAL] A:2340 [C] 4.83 A:2330 [G] 65.41
F:35 [VAL] A:2341 [A] 4.44 A:2329 [U] 65.41
F:37 [ASN] A:2340 [C] 3.69 A:2330 [G] 81.62
F:38 [MET] A:2332 [U] 3.49 38.85
F:39 [GLY] A:2332 [U] 3.16 62.24
F:39 [GLY] A:2339 [U] 3.5 A:2331 [G] 62.24
F:40 [VAL] A:2332 [U] 3.51 base:BB 44.77
F:40 [VAL] A:2333 [U] 3.23 44.77
F:40 [VAL] A:2339 [U] 4.61 A:2331 [G] 44.77
F:42 [ASP] A:2338 [A] 4.66 12.65
F:68 [THR] A:2339 [U] 4.56 A:2331 [G] 64.23
F:68 [THR] A:2340 [C] 4.53 A:2330 [G] 64.23
F:69 [LYS] A:2339 [U] 4.46 A:2331 [G] 33.56
F:70 [ALA] A:2339 [U] 3.84 A:2331 [G] 88.62
F:71 [LYS] A:2339 [U] 3.09 A:2331 [G] 74.9
F:72 [LYS] A:2339 [U] 3.8 A:2331 [G] 62.24
F:74 [ILE] A:2337 [A] 3.96 72.58
F:74 [ILE] A:2338 [A] 4.04 72.58
F:75 [ALA] A:2335 [G] 4.53 88.18
F:75 [ALA] A:2337 [A] 3.92 88.18
F:76 [THR] A:2335 [G] 3.24 base:BB 28.11
F:77 [PHE] A:2338 [A] 3.48 82.34
F:78 [ARG] A:2338 [A] 4.91 70.64
F:79 [LEU] A:2338 [A] 4.75 61.48
F:85 [ILE] A:2339 [U] 4.33 A:2331 [G] 66.96
F:86 [GLY] A:2339 [U] 4.84 A:2331 [G] 93.04
F:88 [LYS] A:2340 [C] 4.75 A:2330 [G] 77.77
F:120 [LYS] A:2330 [G] 4.68 A:2340 [C] 48.94
F:121 [ALA] A:2330 [G] 2.91 A:2340 [C] sugar:BB 66.68
F:122 [PHE] A:2329 [U] 4.6 A:2341 [A] 63.8
F:123 [ASP] A:2329 [U] 3.22 A:2341 [A] 79.16
F:123 [ASP] A:2330 [G] 4.33 A:2340 [C] 79.16
F:124 [GLY] A:2329 [U] 4.75 A:2341 [A] 20.4
F:125 [ARG] A:2342 [U] 3.75 A:2328 [A] 27.11
F:128 [TYR] A:2330 [G] 4.47 A:2340 [C] 46.2
F:129 [THR] A:2330 [G] 3.2 A:2340 [C] 71.02
F:129 [THR] A:2331 [G] 3.07 A:2339 [U] sugar:BB 71.02
F:130 [LEU] A:2331 [G] 3.26 A:2339 [U] 47.87
F:131 [GLY] A:2331 [G] 3.87 A:2339 [U] 81.36
F:131 [GLY] A:2332 [U] 4.4 81.36
F:132 [VAL] A:2332 [U] 3.1 65.4
F:133 [LYS] A:2332 [U] 4.07 29.56
F:151 [GLY] A:2332 [U] 3.23 90.5
F:152 [MET] A:2332 [U] 3.89 33.92
F:155 [VAL] A:2340 [C] 4.98 A:2330 [G] 72.52
F:155 [VAL] A:2341 [A] 4.3 A:2329 [U] 72.52

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group133 7ASM_F_A F: 50s ribosomal protein l5, Staphylococcus aureus (natural) A: 23s rRNA, Staphylococcus aureus (genetically engineered) Q2FW18 Ribosomal protein L5 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 7ASM_F_A 0.41 0.95 3.56 0.49 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7RYG_F_A 0.34 0.97 2.92 0.21 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7K00_f_a 0.34 0.96 3.21 0.11 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare
7ASM_F_A 7O7Y_BJ_B5 0.34 0.89 4.56 0.14 Ribosomal protein L5 compare
6AZ3_D_2 7ASM_F_A 0.36 0.82 3.6 0.06 Ribosomal protein L5 compare
1VQ8_D_0 7ASM_F_A 0.45 0.91 3.35 0.31 Ribosomal protein L5 compare
1MJI_A_C 7ASM_F_A 0.39 0.7 1.49 0.17 Ribosomal protein L5 compare
1YHQ_D_0 7ASM_F_A 0.46 0.91 3.22 0.31 Ribosomal protein L5 compare
6S0Z_F_A 7ASM_F_A 0.57 0.98 2.05 0.88 Ribosomal protein L5 Bacterial large subunit ribosomal RNA compare