Interface analysis
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Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
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StructureStructure (with hetatm)
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show interface as licoriceCommon contacts -
| 7ASM_F
|
7ASM_A
|
7RYG_F
|
7RYG_A
|
Conserved?
|
|---|---|---|---|---|
| F:74 [ILE] | A:2337 [A] | F:74 [ILE] | A:2306 [A] | ✔ |
| F:74 [ILE] | A:2338 [A] | F:74 [ILE] | A:2307 [A] | ✔ |
| F:38 [MET] | A:2332 [U] | F:37 [ASN] | A:2301 [U] | ✔ |
| F:131 [GLY] | A:2331 [G] | F:130 [MET] | A:2300 [G] | ✔ |
| F:132 [VAL] | A:2332 [U] | F:131 [GLY] | A:2301 [U] | ✔ |
| F:79 [LEU] | A:2338 [A] | F:79 [ILE] | A:2307 [A] | ✔ |
| F:88 [LYS] | A:2340 [C] | F:88 [LYS] | A:2309 [C] | ✔ |
| F:68 [THR] | A:2339 [U] | F:68 [THR] | A:2308 [U] | ✔ |
| F:68 [THR] | A:2340 [C] | F:68 [THR] | A:2309 [C] | ✔ |
| F:85 [ILE] | A:2339 [U] | F:85 [ILE] | A:2308 [U] | ✔ |
| F:77 [PHE] | A:2338 [A] | F:77 [PHE] | A:2307 [A] | ✔ |
| F:123 [ASP] | A:2329 [U] | F:124 [GLY] | A:2298 [U] | ✔ |
| F:40 [VAL] | A:2332 [U] | F:39 [GLY] | A:2301 [U] | ✔ |
| F:40 [VAL] | A:2339 [U] | F:39 [GLY] | A:2308 [U] | ✔ |
| F:71 [LYS] | A:2339 [U] | F:71 [ARG] | A:2308 [U] | ✔ |
| F:70 [ALA] | A:2339 [U] | F:70 [ALA] | A:2308 [U] | ✔ |
| F:130 [LEU] | A:2331 [G] | F:129 [SER] | A:2300 [G] | ✔ |
| F:42 [ASP] | A:2338 [A] | F:41 [GLY] | A:2307 [A] | ✔ |
| F:39 [GLY] | A:2332 [U] | F:38 [MET] | A:2301 [U] | ✔ |
| F:39 [GLY] | A:2339 [U] | F:38 [MET] | A:2308 [U] | ✔ |
| F:151 [GLY] | A:2332 [U] | F:152 [MET] | A:2301 [U] | ✔ |
| F:121 [ALA] | A:2330 [G] | F:122 [PHE] | A:2299 [G] | ✔ |
| F:120 [LYS] | A:2330 [G] | F:121 [SER] | A:2299 [G] | ✔ |
| F:122 [PHE] | A:2329 [U] | F:123 [ASP] | A:2298 [U] | ✔ |
| F:86 [GLY] | A:2339 [U] | F:86 [GLY] | A:2308 [U] | ✔ |
| F:152 [MET] | A:2332 [U] | F:153 [ASP] | A:2301 [U] | ✔ |
| F:131 [GLY] | A:2332 [U] | F:130 [MET] | A:2301 [U] | ❌ 7RYG_F_A |
| F:123 [ASP] | A:2330 [G] | F:124 [GLY] | A:2299 [G] | ❌ 7RYG_F_A |
| F:40 [VAL] | A:2333 [U] | F:39 [GLY] | A:2302 [C] | ❌ 7RYG_F_A |
| F:76 [THR] | A:2335 [G] | F:76 [GLY] | A:2304 [G] | ❌ 7RYG_F_A |
| F:128 [TYR] | A:2330 [G] | F:127 [ASN] | A:2299 [G] | ❌ 7RYG_F_A |
| F:120 [LYS] | A:2331 [G] | F:121 [SER] | A:2300 [G] | ❌ 7ASM_F_A |
| F:121 [ALA] | A:2329 [U] | F:122 [PHE] | A:2298 [U] | ❌ 7ASM_F_A |
| F:122 [PHE] | A:2342 [U] | F:123 [ASP] | A:2311 [C] | ❌ 7ASM_F_A |
| F:122 [PHE] | A:2341 [A] | F:123 [ASP] | A:2310 [A] | ❌ 7ASM_F_A |
| F:122 [PHE] | A:2330 [G] | F:123 [ASP] | A:2299 [G] | ❌ 7ASM_F_A |
| F:128 [TYR] | A:2341 [A] | F:127 [ASN] | A:2310 [A] | ❌ 7ASM_F_A |
| F:128 [TYR] | A:2342 [U] | F:127 [ASN] | A:2311 [C] | ❌ 7ASM_F_A |
| F:130 [LEU] | A:2330 [G] | F:129 [SER] | A:2299 [G] | ❌ 7ASM_F_A |
| F:132 [VAL] | A:2331 [G] | F:131 [GLY] | A:2300 [G] | ❌ 7ASM_F_A |
| F:152 [MET] | A:2331 [G] | F:153 [ASP] | A:2300 [G] | ❌ 7ASM_F_A |
| F:152 [MET] | A:2330 [G] | F:153 [ASP] | A:2299 [G] | ❌ 7ASM_F_A |
| F:152 [MET] | A:2340 [C] | F:153 [ASP] | A:2309 [C] | ❌ 7ASM_F_A |
| F:38 [MET] | A:2331 [G] | F:37 [ASN] | A:2300 [G] | ❌ 7ASM_F_A |
| F:38 [MET] | A:2339 [U] | F:37 [ASN] | A:2308 [U] | ❌ 7ASM_F_A |
| F:38 [MET] | A:2340 [C] | F:37 [ASN] | A:2309 [C] | ❌ 7ASM_F_A |
| F:71 [LYS] | A:2340 [C] | F:71 [ARG] | A:2309 [C] | ❌ 7ASM_F_A |
| F:76 [THR] | A:2337 [A] | F:76 [GLY] | A:2306 [A] | ❌ 7ASM_F_A |
| F:77 [PHE] | A:2335 [G] | F:77 [PHE] | A:2304 [G] | ❌ 7ASM_F_A |
| F:77 [PHE] | A:2337 [A] | F:77 [PHE] | A:2306 [A] | ❌ 7ASM_F_A |
| F:79 [LEU] | A:2339 [U] | F:79 [ILE] | A:2308 [U] | ❌ 7ASM_F_A |
| F:85 [ILE] | A:2338 [A] | F:85 [ILE] | A:2307 [A] | ❌ 7ASM_F_A |
| F:88 [LYS] | A:2341 [A] | F:88 [LYS] | A:2310 [A] | ❌ 7ASM_F_A |
| F:126 [GLY] | A:2343 [U] | F:125 [ARG] | A:2312 [G] | ❌ 7ASM_F:126, 7ASM_A:2343 no longer at interface |
| F:40 [VAL] | A:2334 [G] | F:39 [GLY] | A:2303 [G] | ❌ 7ASM_A:2334 no longer at interface |
| F:42 [ASP] | A:2334 [G] | F:41 [GLY] | A:2303 [G] | ❌ 7ASM_A:2334 no longer at interface |
| F:71 [LYS] | A:2325 [A] | F:71 [ARG] | A:2294 [A] | ❌ 7ASM_A:2325 no longer at interface |
| F:78 [ARG] | A:2338 [A] | F:78 [LYS] | A:2307 [A] | ❌ 7RYG_F:78 no longer at interface |
| F:37 [ASN] | A:2340 [C] | F:36 [LEU] | A:2309 [C] | ❌ 7RYG_F:36 no longer at interface |
| F:69 [LYS] | A:2339 [U] | F:69 [LEU] | A:2308 [U] | ❌ 7RYG_F:69 no longer at interface |
| F:129 [THR] | A:2330 [G] | F:128 [TYR] | A:2299 [G] | ❌ 7RYG_F:128 no longer at interface |
| F:129 [THR] | A:2331 [G] | F:128 [TYR] | A:2300 [G] | ❌ 7RYG_F:128 no longer at interface |
| F:72 [LYS] | A:2339 [U] | F:72 [LYS] | A:2308 [U] | ❌ 7RYG_F:72 no longer at interface |
| F:155 [VAL] | A:2340 [C] | F:156 [ILE] | A:2309 [C] | ❌ 7RYG_F:156 no longer at interface |
| F:155 [VAL] | A:2341 [A] | F:156 [ILE] | A:2310 [A] | ❌ 7RYG_F:156 no longer at interface |
| F:35 [VAL] | A:2340 [C] | F:34 [ILE] | A:2309 [C] | ❌ 7RYG_F:34 no longer at interface |
| F:35 [VAL] | A:2341 [A] | F:34 [ILE] | A:2310 [A] | ❌ 7RYG_F:34 no longer at interface |
| F:133 [LYS] | A:2332 [U] | F:132 [LEU] | A:2301 [U] | ❌ 7RYG_F:132 no longer at interface |
| F:75 [ALA] | A:2335 [G] | F:75 [ALA] | A:2304 [G] | ❌ 7RYG_F:75 no longer at interface |
| F:75 [ALA] | A:2337 [A] | F:75 [ALA] | A:2306 [A] | ❌ 7RYG_F:75 no longer at interface |
| F:126 [GLY] | A:2342 [U] | F:125 [ARG] | A:2311 [C] | ❌ 7ASM_F:126 no longer at interface |
| F:134 [GLU] | A:2331 [G] | F:133 [LYS] | A:2300 [G] | ❌ 7ASM_F:134 no longer at interface |
| F:134 [GLU] | A:2332 [U] | F:133 [LYS] | A:2301 [U] | ❌ 7ASM_F:134 no longer at interface |
| F:149 [VAL] | A:2333 [U] | F:150 [ARG] | A:2302 [C] | ❌ 7ASM_F:149 no longer at interface |
| F:150 [ARG] | A:2332 [U] | F:151 [GLY] | A:2301 [U] | ❌ 7ASM_F:150 no longer at interface |
| F:150 [ARG] | A:2333 [U] | F:151 [GLY] | A:2302 [C] | ❌ 7ASM_F:150 no longer at interface |
| F:154 [ILE] | A:2341 [A] | F:155 [THR] | A:2310 [A] | ❌ 7ASM_F:154 no longer at interface |
| F:154 [ILE] | A:2330 [G] | F:155 [THR] | A:2299 [G] | ❌ 7ASM_F:154 no longer at interface |
| F:154 [ILE] | A:2340 [C] | F:155 [THR] | A:2309 [C] | ❌ 7ASM_F:154 no longer at interface |
| F:156 [ILE] | A:2341 [A] | F:157 [THR] | A:2310 [A] | ❌ 7ASM_F:156 no longer at interface |
| F:156 [ILE] | A:2342 [U] | F:157 [THR] | A:2311 [C] | ❌ 7ASM_F:156 no longer at interface |
| F:34 [ILE] | A:2341 [A] | F:33 [LYS] | A:2310 [A] | ❌ 7ASM_F:34 no longer at interface |
| F:34 [ILE] | A:2342 [U] | F:33 [LYS] | A:2311 [C] | ❌ 7ASM_F:34 no longer at interface |
| F:36 [VAL] | A:2341 [A] | F:35 [THR] | A:2310 [A] | ❌ 7ASM_F:36 no longer at interface |
| F:36 [VAL] | A:2340 [C] | F:35 [THR] | A:2309 [C] | ❌ 7ASM_F:36 no longer at interface |
| F:87 [ALA] | A:2339 [U] | F:87 [CYS] | A:2308 [U] | ❌ 7ASM_F:87 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | 0.97 | 2.92 | 0.21 | 0.9 | 0.98 | 0.71 | 1.0 | 0.34 | 0.21 | 0.06 | 0.55 |
Other pairs involving 7ASM_F_A or 7RYG_F_A
Total number of entries: 15