Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7K00_f
|
7K00_a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| f:32 [GLU] | a:2315 [G] | 4.68 | a:2301 [C] | 38.64 | ||
| f:33 [LYS] | a:2314 [A] | 3.46 | a:2302 [U] | 90.0 | ||
| f:33 [LYS] | a:2315 [G] | 2.88 | a:2301 [C] | 90.0 | ||
| f:35 [THR] | a:2313 [C] | 3.32 | a:2303 [G] | 68.99 | ||
| f:35 [THR] | a:2314 [A] | 3.57 | a:2302 [U] | 68.99 | ||
| f:37 [ASN] | a:2304 [G] | 4.12 | a:2312 [U] | 87.14 | ||
| f:37 [ASN] | a:2305 [U] | 4.24 | 87.14 | |||
| f:37 [ASN] | a:2312 [U] | 2.65 | a:2304 [G] | base:SC, sugar:SC | 87.14 | |
| f:37 [ASN] | a:2313 [C] | 2.9 | a:2303 [G] | 87.14 | ||
| f:38 [MET] | a:2305 [U] | 3.45 | 43.15 | |||
| f:38 [MET] | a:2312 [U] | 3.87 | a:2304 [G] | 43.15 | ||
| f:39 [GLY] | a:2305 [U] | 3.0 | base:BB | 75.87 | ||
| f:39 [GLY] | a:2306 [C] | 3.18 | base:BB | 75.87 | ||
| f:39 [GLY] | a:2307 [G] | 3.53 | 75.87 | |||
| f:39 [GLY] | a:2312 [U] | 3.65 | a:2304 [G] | 75.87 | ||
| f:40 [VAL] | a:2307 [G] | 4.1 | 46.93 | |||
| f:41 [GLY] | a:2307 [G] | 3.1 | base:BB | 69.07 | ||
| f:41 [GLY] | a:2311 [A] | 3.36 | 69.07 | |||
| f:42 [GLU] | a:2306 [C] | 4.44 | 31.53 | |||
| f:42 [GLU] | a:2307 [G] | 3.51 | 31.53 | |||
| f:42 [GLU] | a:2311 [A] | 4.59 | 31.53 | |||
| f:44 [ILE] | a:2311 [A] | 4.77 | 16.17 | |||
| f:68 [THR] | a:2312 [U] | 2.73 | a:2304 [G] | sugar:SC | 73.46 | |
| f:68 [THR] | a:2313 [C] | 3.46 | a:2303 [G] | 73.46 | ||
| f:69 [LYS] | a:2312 [U] | 3.5 | a:2304 [G] | 24.62 | ||
| f:70 [ALA] | a:2311 [A] | 4.8 | 84.54 | |||
| f:70 [ALA] | a:2312 [U] | 3.41 | a:2304 [G] | 84.54 | ||
| f:71 [ARG] | a:2298 [A] | 2.81 | a:2318 [G] | 83.01 | ||
| f:71 [ARG] | a:2299 [U] | 2.58 | a:2317 [A] | 83.01 | ||
| f:71 [ARG] | a:2311 [A] | 4.98 | 83.01 | |||
| f:71 [ARG] | a:2312 [U] | 2.66 | a:2304 [G] | 83.01 | ||
| f:72 [LYS] | a:2298 [A] | 4.82 | a:2318 [G] | 60.07 | ||
| f:72 [LYS] | a:2299 [U] | 2.56 | a:2317 [A] | 60.07 | ||
| f:72 [LYS] | a:2300 [C] | 4.89 | a:2316 [G] | 60.07 | ||
| f:72 [LYS] | a:2312 [U] | 4.32 | a:2304 [G] | 60.07 | ||
| f:74 [VAL] | a:2310 [C] | 3.13 | 80.46 | |||
| f:74 [VAL] | a:2311 [A] | 4.22 | 80.46 | |||
| f:76 [GLY] | a:2309 [A] | 4.92 | 42.9 | |||
| f:76 [GLY] | a:2310 [C] | 3.99 | 42.9 | |||
| f:77 [PHE] | a:2308 [G] | 3.31 | base/AA stacks | 88.13 | ||
| f:77 [PHE] | a:2310 [C] | 3.23 | base/AA stacks | 88.13 | ||
| f:77 [PHE] | a:2311 [A] | 3.33 | base/AA stacks | 88.13 | ||
| f:79 [ILE] | a:2311 [A] | 3.37 | 56.6 | |||
| f:85 [ILE] | a:2311 [A] | 3.79 | 75.71 | |||
| f:85 [ILE] | a:2312 [U] | 3.29 | a:2304 [G] | 75.71 | ||
| f:86 [GLY] | a:2312 [U] | 3.81 | a:2304 [G] | 89.59 | ||
| f:87 [CYS] | a:2312 [U] | 4.29 | a:2304 [G] | 34.5 | ||
| f:88 [LYS] | a:2313 [C] | 3.64 | a:2303 [G] | 61.67 | ||
| f:88 [LYS] | a:2314 [A] | 3.21 | a:2302 [U] | 61.67 | ||
| f:120 [LYS] | a:2303 [G] | 4.24 | a:2313 [C] | 43.28 | ||
| f:120 [LYS] | a:2304 [G] | 4.96 | a:2312 [U] | 43.28 | ||
| f:121 [SER] | a:2303 [G] | 2.54 | a:2313 [C] | sugar:BB | 72.61 | |
| f:121 [SER] | a:2304 [G] | 2.68 | a:2312 [U] | 72.61 | ||
| f:122 [PHE] | a:2302 [U] | 4.25 | a:2314 [A] | 65.3 | ||
| f:122 [PHE] | a:2303 [G] | 3.25 | a:2313 [C] | 65.3 | ||
| f:123 [ASP] | a:2302 [U] | 3.17 | a:2314 [A] | 91.25 | ||
| f:123 [ASP] | a:2303 [G] | 3.37 | a:2313 [C] | 91.25 | ||
| f:123 [ASP] | a:2314 [A] | 4.44 | a:2302 [U] | 91.25 | ||
| f:123 [ASP] | a:2315 [G] | 3.23 | a:2301 [C] | 91.25 | ||
| f:124 [GLY] | a:2302 [U] | 4.09 | a:2314 [A] | 10.94 | ||
| f:125 [ARG] | a:2315 [G] | 3.33 | a:2301 [C] | sugar:SC | 26.17 | |
| f:125 [ARG] | a:2316 [G] | 3.04 | a:2300 [C] | 26.17 | ||
| f:127 [ASN] | a:2303 [G] | 4.9 | a:2313 [C] | 94.13 | ||
| f:127 [ASN] | a:2314 [A] | 4.08 | a:2302 [U] | 94.13 | ||
| f:127 [ASN] | a:2315 [G] | 3.29 | a:2301 [C] | sugar:SC | 94.13 | |
| f:129 [SER] | a:2303 [G] | 3.25 | a:2313 [C] | base:SC, base:SC | 75.76 | |
| f:129 [SER] | a:2304 [G] | 3.08 | a:2312 [U] | 75.76 | ||
| f:130 [MET] | a:2304 [G] | 3.27 | a:2312 [U] | 64.39 | ||
| f:130 [MET] | a:2305 [U] | 4.67 | 64.39 | |||
| f:131 [GLY] | a:2304 [G] | 3.34 | a:2312 [U] | 89.56 | ||
| f:131 [GLY] | a:2305 [U] | 3.57 | 89.56 | |||
| f:132 [VAL] | a:2305 [U] | 3.8 | 73.26 | |||
| f:133 [ARG] | a:2305 [U] | 3.74 | 31.99 | |||
| f:150 [ARG] | a:2305 [U] | 4.74 | 17.37 | |||
| f:151 [GLY] | a:2305 [U] | 3.25 | 97.9 | |||
| f:152 [LEU] | a:2305 [U] | 3.44 | 51.15 | |||
| f:153 [ASP] | a:2304 [G] | 3.1 | a:2312 [U] | 63.42 | ||
| f:153 [ASP] | a:2305 [U] | 3.79 | 63.42 | |||
| f:153 [ASP] | a:2312 [U] | 4.6 | a:2304 [G] | 63.42 | ||
| f:153 [ASP] | a:2313 [C] | 4.3 | a:2303 [G] | 63.42 | ||
| f:154 [ILE] | a:2304 [G] | 4.83 | a:2312 [U] | 85.45 | ||
| f:155 [THR] | a:2303 [G] | 3.76 | a:2313 [C] | base:SC | 72.97 | |
| f:155 [THR] | a:2313 [C] | 4.06 | a:2303 [G] | 72.97 | ||
| f:155 [THR] | a:2314 [A] | 3.43 | a:2302 [U] | 72.97 | ||
| f:157 [THR] | a:2314 [A] | 3.2 | a:2302 [U] | sugar:SC | 49.35 | |
| f:157 [THR] | a:2315 [G] | 3.83 | a:2301 [C] | 49.35 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group133 | 7K00_f_a | f: 50s ribosomal protein l5, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) | P62399 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 8
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1G_1A | 7K00_f_a | 0.92 | 0.97 | 1.89 | 0.55 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |
| 7ASM_F_A | 7K00_f_a | 0.34 | 0.96 | 3.21 | 0.11 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |
| 6AZ3_D_2 | 7K00_f_a | 0.79 | 0.83 | 2.15 | 0.24 | Ribosomal protein L5 | compare | |
| 7K00_f_a | 7O7Y_BJ_B5 | 0.84 | 0.89 | 3.13 | 0.33 | Ribosomal protein L5 | compare | |
| 7K00_f_a | 7RYG_F_A | 0.83 | 0.99 | 3.23 | 0.76 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |
| 1VQ8_D_0 | 7K00_f_a | 0.35 | 0.9 | 3.47 | 0.08 | Ribosomal protein L5 | compare | |
| 1YHQ_D_0 | 7K00_f_a | 0.40 | 0.9 | 3.5 | 0.14 | Ribosomal protein L5 | compare | |
| 6S0Z_F_A | 7K00_f_a | 0.59 | 0.97 | 2.39 | 0.52 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |