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All interfaces > All interologs > Interface groups > group133 > 7O7Y_BJ_B5

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_BJ
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BJ:19 [LYS] B5:4006 [U] 3.15 B5:3994 [A] 98.6
BJ:19 [LYS] B5:4007 [C] 2.88 B5:3993 [G] 98.6
BJ:21 [CYS] B5:4005 [C] 3.67 B5:3995 [G] 72.0
BJ:21 [CYS] B5:4006 [U] 3.52 B5:3994 [A] 72.0
BJ:22 [LEU] B5:4005 [C] 4.99 B5:3995 [G] 73.5
BJ:23 [ASN] B5:3996 [G] 3.8 B5:4004 [C] 93.2
BJ:23 [ASN] B5:3997 [A] 4.68 93.2
BJ:23 [ASN] B5:4004 [C] 2.51 B5:3996 [G] base:SC, sugar:SC 93.2
BJ:23 [ASN] B5:4005 [C] 3.1 B5:3995 [G] 93.2
BJ:24 [ILE] B5:3997 [A] 4.02 74.2
BJ:25 [CYS] B5:3997 [A] 3.73 74.1
BJ:25 [CYS] B5:3998 [C] 3.41 base:BB 74.1
BJ:25 [CYS] B5:3999 [A] 3.2 base:BB 74.1
BJ:25 [CYS] B5:4003 [A] 3.43 74.1
BJ:25 [CYS] B5:4004 [C] 3.56 B5:3996 [G] 74.1
BJ:26 [VAL] B5:3997 [A] 4.96 74.3
BJ:26 [VAL] B5:3999 [A] 3.79 74.3
BJ:27 [GLY] B5:3999 [A] 4.22 91.9
BJ:27 [GLY] B5:4003 [A] 3.47 91.9
BJ:51 [SER] B5:4004 [C] 2.95 B5:3996 [G] 78.7
BJ:51 [SER] B5:4005 [C] 3.39 B5:3995 [G] 78.7
BJ:52 [LYS] B5:4004 [C] 3.78 B5:3996 [G] 2.3
BJ:53 [ALA] B5:4003 [A] 4.98 80.5
BJ:53 [ALA] B5:4004 [C] 3.21 B5:3996 [G] 80.5
BJ:54 [ARG] B5:4003 [A] 4.39 58.1
BJ:54 [ARG] B5:4004 [C] 2.6 B5:3996 [G] 58.1
BJ:55 [TYR] B5:4004 [C] 4.59 B5:3996 [G] 49.2
BJ:57 [VAL] B5:4002 [A] 3.83 56.9
BJ:57 [VAL] B5:4003 [A] 4.52 56.9
BJ:59 [SER] B5:4002 [A] 3.79 50.2
BJ:60 [PHE] B5:4000 [G] 3.42 base/AA stacks 61.9
BJ:60 [PHE] B5:4002 [A] 3.34 base/AA stacks 61.9
BJ:60 [PHE] B5:4003 [A] 3.29 base/AA stacks 61.9
BJ:62 [ILE] B5:4003 [A] 3.38 69.8
BJ:68 [ILE] B5:4003 [A] 3.94 84.6
BJ:68 [ILE] B5:4004 [C] 4.17 B5:3996 [G] 84.6
BJ:69 [ALA] B5:4004 [C] 3.27 B5:3996 [G] 80.3
BJ:71 [HIS] B5:4005 [C] 3.66 B5:3995 [G] 56.1
BJ:71 [HIS] B5:4006 [U] 4.62 B5:3994 [A] 56.1
BJ:73 [THR] B5:4006 [U] 4.7 B5:3994 [A] 99.0
BJ:97 [ASN] B5:3995 [G] 2.86 B5:4005 [C] 44.3
BJ:97 [ASN] B5:3996 [G] 2.84 B5:4004 [C] 44.3
BJ:98 [ASN] B5:3995 [G] 2.95 B5:4005 [C] sugar:BB 71.2
BJ:98 [ASN] B5:3996 [G] 2.9 B5:4004 [C] 71.2
BJ:99 [PHE] B5:3994 [A] 4.81 B5:4006 [U] 77.7
BJ:99 [PHE] B5:3995 [G] 3.95 B5:4005 [C] 77.7
BJ:100 [SER] B5:3994 [A] 3.39 B5:4006 [U] 89.6
BJ:100 [SER] B5:3995 [G] 3.39 B5:4005 [C] 89.6
BJ:101 [ASP] B5:3993 [G] 4.58 B5:4007 [C] 20.3
BJ:101 [ASP] B5:3994 [A] 2.42 B5:4006 [U] sugar:SC 20.3
BJ:102 [THR] B5:3993 [G] 3.91 B5:4007 [C] 0.1
BJ:102 [THR] B5:4007 [C] 3.38 B5:3993 [G] sugar:SC 0.1
BJ:102 [THR] B5:4008 [C] 3.61 B5:3992 [G] 0.1
BJ:104 [ASN] B5:3995 [G] 4.97 B5:4005 [C] 91.1
BJ:104 [ASN] B5:4006 [U] 4.13 B5:3994 [A] 91.1
BJ:104 [ASN] B5:4007 [C] 3.25 B5:3993 [G] sugar:SC 91.1
BJ:105 [PHE] B5:3995 [G] 4.38 B5:4005 [C] 42.7
BJ:106 [GLY] B5:3995 [G] 3.96 B5:4005 [C] 82.5
BJ:106 [GLY] B5:3996 [G] 3.3 B5:4004 [C] 82.5
BJ:107 [PHE] B5:3996 [G] 3.4 B5:4004 [C] 84.6
BJ:107 [PHE] B5:3997 [A] 3.97 84.6
BJ:108 [GLY] B5:3996 [G] 3.52 B5:4004 [C] 97.7
BJ:108 [GLY] B5:3997 [A] 3.17 97.7
BJ:109 [ILE] B5:3997 [A] 3.79 82.6
BJ:110 [GLN] B5:3997 [A] 3.69 37.9
BJ:126 [TYR] B5:3997 [A] 4.89 36.7
BJ:127 [GLY] B5:3997 [A] 3.2 98.6
BJ:128 [LEU] B5:3997 [A] 3.62 63.3
BJ:129 [ASP] B5:3996 [G] 3.01 B5:4004 [C] base:SC 78.0
BJ:129 [ASP] B5:3997 [A] 3.0 78.0
BJ:129 [ASP] B5:4004 [C] 4.71 B5:3996 [G] 78.0
BJ:130 [PHE] B5:3996 [G] 3.71 B5:4004 [C] 86.6
BJ:131 [TYR] B5:3994 [A] 4.77 B5:4006 [U] 34.7
BJ:131 [TYR] B5:3995 [G] 3.19 B5:4005 [C] sugar:SC 34.7
BJ:131 [TYR] B5:3996 [G] 3.75 B5:4004 [C] 34.7
BJ:131 [TYR] B5:4006 [U] 3.73 B5:3994 [A] 34.7
BJ:133 [VAL] B5:4006 [U] 3.33 B5:3994 [A] 55.3
BJ:133 [VAL] B5:4007 [C] 4.36 B5:3993 [G] 55.3
BJ:142 [ALA] B5:4008 [C] 4.99 B5:3992 [G] 60.2
BJ:145 [LYS] B5:3986 [G] 4.35 B5:4030 [C] 49.7
BJ:145 [LYS] B5:3987 [C] 3.23 B5:4029 [G] 49.7
BJ:145 [LYS] B5:4026 [A] 3.42 49.7
BJ:146 [ARG] B5:4026 [A] 4.12 44.8
BJ:150 [CYS] B5:4009 [C] 4.43 B5:3991 [G] 50.7

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group133 7O7Y_BJ_B5 BJ: Ribosomal protein l11, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1TUB8 Ribosomal protein L5 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1G_1A 7O7Y_BJ_B5 0.48 0.89 4.25 0.09 Ribosomal protein L5 compare
7ASM_F_A 7O7Y_BJ_B5 0.34 0.89 4.56 0.14 Ribosomal protein L5 compare
6AZ3_D_2 7O7Y_BJ_B5 0.92 0.92 0.74 0.75 Ribosomal protein L5 Eukaryotic large subunit ribosomal RNA compare
7K00_f_a 7O7Y_BJ_B5 0.84 0.89 3.13 0.33 Ribosomal protein L5 compare
1VQ8_D_0 7O7Y_BJ_B5 0.34 0.93 3.98 0.05 Ribosomal protein L5 compare
5NS3_A_C 7O7Y_BJ_B5 0.60 0.66 1.88 0.3 Ribosomal protein L5 compare
5NS4_A_C 7O7Y_BJ_B5 0.64 0.68 1.95 0.27 Ribosomal protein L5 compare
1YHQ_D_0 7O7Y_BJ_B5 0.31 0.93 3.99 0.05 Ribosomal protein L5 compare
6S0Z_F_A 7O7Y_BJ_B5 0.35 0.89 4.72 0.15 Ribosomal protein L5 compare