Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7RYG_F
|
7RYG_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| F:33 [LYS] | A:2310 [A] | 3.79 | A:2298 [U] | 90.3 | ||
| F:33 [LYS] | A:2311 [C] | 3.58 | A:2297 [G] | 90.3 | ||
| F:35 [THR] | A:2309 [C] | 3.64 | A:2300 [G] | 73.0 | ||
| F:35 [THR] | A:2310 [A] | 4.27 | A:2298 [U] | 73.0 | ||
| F:37 [ASN] | A:2300 [G] | 4.32 | A:2309 [C] | 87.5 | ||
| F:37 [ASN] | A:2301 [U] | 4.82 | 87.5 | |||
| F:37 [ASN] | A:2308 [U] | 2.87 | base:SC, sugar:SC | 87.5 | ||
| F:37 [ASN] | A:2309 [C] | 2.79 | A:2300 [G] | 87.5 | ||
| F:38 [MET] | A:2301 [U] | 3.68 | 45.1 | |||
| F:38 [MET] | A:2308 [U] | 4.38 | 45.1 | |||
| F:39 [GLY] | A:2301 [U] | 3.36 | base:BB | 70.6 | ||
| F:39 [GLY] | A:2303 [G] | 3.2 | base:BB, base:BB | 70.6 | ||
| F:39 [GLY] | A:2308 [U] | 3.96 | 70.6 | |||
| F:41 [GLY] | A:2303 [G] | 4.82 | 75.9 | |||
| F:41 [GLY] | A:2307 [A] | 3.24 | 75.9 | |||
| F:42 [ALA] | A:2307 [A] | 3.51 | base:BB | 35.9 | ||
| F:68 [THR] | A:2308 [U] | 3.23 | 70.1 | |||
| F:68 [THR] | A:2309 [C] | 3.36 | A:2300 [G] | 70.1 | ||
| F:70 [ALA] | A:2308 [U] | 4.48 | 88.5 | |||
| F:71 [ARG] | A:2294 [A] | 3.96 | A:2314 [G] | 81.1 | ||
| F:71 [ARG] | A:2308 [U] | 3.17 | 81.1 | |||
| F:71 [ARG] | A:2309 [C] | 3.93 | A:2300 [G] | 81.1 | ||
| F:74 [ILE] | A:2306 [A] | 3.36 | 88.1 | |||
| F:74 [ILE] | A:2307 [A] | 4.38 | 88.1 | |||
| F:76 [GLY] | A:2306 [A] | 4.33 | 56.7 | |||
| F:77 [PHE] | A:2304 [G] | 3.67 | 92.0 | |||
| F:77 [PHE] | A:2306 [A] | 4.03 | base/AA stacks | 92.0 | ||
| F:77 [PHE] | A:2307 [A] | 3.23 | base/AA stacks | 92.0 | ||
| F:79 [ILE] | A:2307 [A] | 4.02 | 59.0 | |||
| F:79 [ILE] | A:2308 [U] | 4.32 | 59.0 | |||
| F:85 [ILE] | A:2307 [A] | 4.1 | 68.5 | |||
| F:85 [ILE] | A:2308 [U] | 2.97 | 68.5 | |||
| F:86 [GLY] | A:2308 [U] | 4.03 | 86.4 | |||
| F:87 [CYS] | A:2308 [U] | 4.34 | 17.6 | |||
| F:88 [LYS] | A:2309 [C] | 3.63 | A:2300 [G] | 61.8 | ||
| F:88 [LYS] | A:2310 [A] | 3.47 | A:2298 [U] | 61.8 | ||
| F:121 [SER] | A:2299 [G] | 2.6 | sugar:BB | 73.1 | ||
| F:121 [SER] | A:2300 [G] | 4.09 | A:2309 [C] | 73.1 | ||
| F:122 [PHE] | A:2298 [U] | 4.79 | A:2310 [A] | 62.1 | ||
| F:122 [PHE] | A:2299 [G] | 4.21 | 62.1 | |||
| F:123 [ASP] | A:2298 [U] | 2.63 | A:2310 [A] | sugar:BB | 85.9 | |
| F:123 [ASP] | A:2299 [G] | 4.46 | 85.9 | |||
| F:123 [ASP] | A:2310 [A] | 4.77 | A:2298 [U] | 85.9 | ||
| F:123 [ASP] | A:2311 [C] | 4.64 | A:2297 [G] | 85.9 | ||
| F:124 [GLY] | A:2298 [U] | 4.72 | A:2310 [A] | 4.1 | ||
| F:125 [ARG] | A:2311 [C] | 3.32 | A:2297 [G] | 40.7 | ||
| F:125 [ARG] | A:2312 [G] | 4.34 | A:2296 [C] | 40.7 | ||
| F:127 [ASN] | A:2310 [A] | 3.76 | A:2298 [U] | 91.7 | ||
| F:127 [ASN] | A:2311 [C] | 3.54 | A:2297 [G] | sugar:SC | 91.7 | |
| F:129 [SER] | A:2299 [G] | 2.63 | sugar:SC | 73.6 | ||
| F:129 [SER] | A:2300 [G] | 3.57 | A:2309 [C] | sugar:SC | 73.6 | |
| F:130 [MET] | A:2300 [G] | 3.12 | A:2309 [C] | 56.6 | ||
| F:131 [GLY] | A:2300 [G] | 3.25 | A:2309 [C] | 88.1 | ||
| F:131 [GLY] | A:2301 [U] | 4.36 | 88.1 | |||
| F:133 [LYS] | A:2300 [G] | 3.85 | A:2309 [C] | 40.9 | ||
| F:133 [LYS] | A:2301 [U] | 2.14 | 40.9 | |||
| F:150 [ARG] | A:2302 [C] | 4.87 | 15.7 | |||
| F:151 [GLY] | A:2301 [U] | 4.43 | 94.3 | |||
| F:151 [GLY] | A:2302 [C] | 4.48 | 94.3 | |||
| F:152 [MET] | A:2301 [U] | 4.99 | 53.0 | |||
| F:153 [ASP] | A:2299 [G] | 3.9 | 66.8 | |||
| F:153 [ASP] | A:2300 [G] | 2.35 | A:2309 [C] | base:SC | 66.8 | |
| F:153 [ASP] | A:2301 [U] | 4.6 | 66.8 | |||
| F:153 [ASP] | A:2309 [C] | 3.79 | A:2300 [G] | 66.8 | ||
| F:155 [THR] | A:2299 [G] | 3.6 | base:SC | 76.4 | ||
| F:155 [THR] | A:2309 [C] | 4.25 | A:2300 [G] | 76.4 | ||
| F:155 [THR] | A:2310 [A] | 3.75 | A:2298 [U] | 76.4 | ||
| F:157 [THR] | A:2310 [A] | 3.11 | A:2298 [U] | sugar:SC | 49.2 | |
| F:157 [THR] | A:2311 [C] | 4.45 | A:2297 [G] | 49.2 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group133 | 7RYG_F_A | F: 50s ribosomal protein l5, Acinetobacter baumannii (strain ab0057) (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) | B7IA27 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 7
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1G_1A | 7RYG_F_A | 0.78 | 0.96 | 3.49 | 0.53 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |
| 7ASM_F_A | 7RYG_F_A | 0.34 | 0.97 | 2.92 | 0.21 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |
| 6AZ3_D_2 | 7RYG_F_A | 0.53 | 0.81 | 3.21 | 0.21 | Ribosomal protein L5 | compare | |
| 7K00_f_a | 7RYG_F_A | 0.83 | 0.99 | 3.23 | 0.76 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |
| 1VQ8_D_0 | 7RYG_F_A | 0.77 | 0.9 | 2.91 | 0.4 | Ribosomal protein L5 | compare | |
| 1YHQ_D_0 | 7RYG_F_A | 0.71 | 0.9 | 2.81 | 0.38 | Ribosomal protein L5 | compare | |
| 6S0Z_F_A | 7RYG_F_A | 0.59 | 0.97 | 3.23 | 0.48 | Ribosomal protein L5 | Bacterial large subunit ribosomal RNA | compare |