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All interfaces > All interologs > Interface groups > group134 > 1VQ8_R_0

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_R
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
R:1 [GLY] 0:21 [G] 3.4 0:522 [U] 0.0
R:1 [GLY] 0:22 [U] 2.75 0:521 [A] 0.0
R:2 [ILE] 0:20 [G] 3.4 0:523 [C] 0.0
R:2 [ILE] 0:21 [G] 3.51 0:522 [U] 0.0
R:3 [SER] 0:20 [G] 2.81 0:523 [C] sugar:BB, sugar:BB 0.0
R:3 [SER] 0:21 [G] 2.9 0:522 [U] 0.0
R:3 [SER] 0:510 [U] 3.47 0.0
R:4 [TYR] 0:19 [U] 4.4 0:524 [A] 0.0
R:4 [TYR] 0:20 [G] 3.98 0:523 [C] 0.0
R:4 [TYR] 0:500 [G] 3.91 0:492 [C] 0.0
R:4 [TYR] 0:501 [G] 2.77 0:491 [C] 0.0
R:4 [TYR] 0:510 [U] 4.05 0.0
R:5 [SER] 0:19 [U] 2.63 0:524 [A] sugar:BB 0.0
R:5 [SER] 0:20 [G] 3.07 0:523 [C] 0.0
R:6 [VAL] 0:19 [U] 4.23 0:524 [A] 0.0
R:15 [LYS] 0:500 [G] 4.41 0:492 [C] 0.0
R:15 [LYS] 0:501 [G] 3.52 0:491 [C] 0.0
R:15 [LYS] 0:502 [A] 4.14 0:490 [C] 0.0
R:16 [ALA] 0:500 [G] 3.38 0:492 [C] 0.0
R:16 [ALA] 0:501 [G] 4.21 0:491 [C] 0.0
R:17 [MET] 0:499 [G] 4.35 0:493 [U] 0.0
R:17 [MET] 0:500 [G] 3.21 0:492 [C] sugar:BB 0.0
R:17 [MET] 0:501 [G] 3.26 0:491 [C] 0.0
R:18 [LEU] 0:499 [G] 4.65 0:493 [U] 0.0
R:19 [ARG] 0:499 [G] 3.3 0:493 [U] 0.0
R:19 [ARG] 0:500 [G] 2.92 0:492 [C] 0.0
R:22 [GLN] 0:1427 [A] 4.36 0.0
R:22 [GLN] 0:1428 [C] 3.56 0.0
R:22 [GLN] 0:2052 [U] 4.27 0:1373 [G] 0.0
R:23 [MET] 0:1370 [G] 4.96 0:1371 [U] 0.0
R:23 [MET] 0:2052 [U] 4.48 0:1373 [G] 0.0
R:24 [SER] 0:1370 [G] 2.85 0:1371 [U] base:SC 0.0
R:24 [SER] 0:2052 [U] 4.94 0:1373 [G] 0.0
R:25 [PHE] 0:523 [C] 3.35 0:20 [G] 0.0
R:25 [PHE] 0:524 [A] 3.63 0:19 [U] 0.0
R:25 [PHE] 0:1370 [G] 4.47 0:1371 [U] 0.0
R:26 [LYS] 0:1368 [U] 4.24 0:2056 [C] 0.0
R:26 [LYS] 0:1369 [A] 2.84 sugar:SC 0.0
R:26 [LYS] 0:1370 [G] 2.79 0:1371 [U] 0.0
R:27 [HIS] 0:1370 [G] 3.85 0:1371 [U] 0.0
R:27 [HIS] 0:2051 [G] 3.64 0:1374 [C] 0.0
R:29 [LYS] 0:523 [C] 3.41 0:20 [G] 0.0
R:29 [LYS] 0:524 [A] 2.9 0:19 [U] 0.0
R:29 [LYS] 0:525 [G] 4.57 0:18 [C] 0.0
R:33 [ARG] 0:12 [U] 4.84 0:531 [G] 0.0
R:33 [ARG] 0:525 [G] 3.34 0:18 [C] 0.0
R:36 [LYS] 0:525 [G] 4.19 0:18 [C] 0.0
R:36 [LYS] 0:526 [U] 2.87 0:17 [G] 0.0
R:60 [LYS] 0:11 [A] 2.87 sugar:SC 0.0
R:60 [LYS] 0:12 [U] 3.43 0:531 [G] 0.0
R:60 [LYS] 0:13 [G] 4.74 0:530 [C] 0.0
R:61 [GLN] 0:12 [U] 4.68 0:531 [G] 0.0
R:61 [GLN] 0:13 [G] 3.73 0:530 [C] 0.0
R:61 [GLN] 0:524 [A] 3.78 0:19 [U] 0.0
R:61 [GLN] 0:1370 [G] 4.38 0:1371 [U] 0.0
R:62 [HIS] 0:524 [A] 4.99 0:19 [U] 0.0
R:62 [HIS] 0:1367 [A] 4.82 0:2057 [U] 0.0
R:62 [HIS] 0:1370 [G] 2.86 0:1371 [U] 0.0
R:63 [ASN] 0:1370 [G] 3.59 0:1371 [U] 0.0
R:63 [ASN] 0:2086 [C] 4.9 0:2658 [G] 0.0
R:63 [ASN] 0:2087 [C] 3.83 0:2657 [G] 0.0
R:63 [ASN] 0:2088 [C] 3.83 0:2656 [G] 0.0
R:64 [SER] 0:1369 [A] 2.87 0.0
R:64 [SER] 0:1370 [G] 2.49 0:1371 [U] 0.0
R:64 [SER] 0:1371 [U] 3.93 0:1370 [G] 0.0
R:64 [SER] 0:2087 [C] 4.72 0:2657 [G] 0.0
R:64 [SER] 0:2088 [C] 3.27 0:2656 [G] 0.0
R:65 [GLY] 0:1371 [U] 4.96 0:1370 [G] 0.0
R:65 [GLY] 0:2048 [C] 3.24 0:1727 [G] 0.0
R:65 [GLY] 0:2087 [C] 4.53 0:2657 [G] 0.0
R:65 [GLY] 0:2088 [C] 2.55 0:2656 [G] 0.0
R:65 [GLY] 0:2089 [A] 3.82 0:2655 [U] 0.0
R:66 [VAL] 0:2049 [C] 4.11 0:1726 [G] 0.0
R:66 [VAL] 0:2087 [C] 4.29 0:2657 [G] 0.0
R:66 [VAL] 0:2088 [C] 3.55 0:2656 [G] 0.0
R:67 [GLY] 0:2048 [C] 4.48 0:1727 [G] 0.0
R:67 [GLY] 0:2049 [C] 3.97 0:1726 [G] 0.0
R:67 [GLY] 0:2841 [A] 3.56 0.0
R:68 [HIS] 0:2087 [C] 3.02 0:2657 [G] sugar:SC 0.0
R:68 [HIS] 0:2088 [C] 4.02 0:2656 [G] 0.0
R:68 [HIS] 0:2657 [G] 3.65 0:2087 [C] 0.0
R:68 [HIS] 0:2658 [G] 2.62 0:2086 [C] sugar:SC 0.0
R:68 [HIS] 0:2659 [U] 4.34 0:2085 [A] 0.0
R:68 [HIS] 0:2841 [A] 2.82 base:BB, sugar:BB 0.0
R:68 [HIS] 0:2842 [G] 3.3 0.0
R:69 [LYS] 0:2048 [C] 3.55 0:1727 [G] 0.0
R:69 [LYS] 0:2049 [C] 2.96 0:1726 [G] 0.0
R:69 [LYS] 0:2841 [A] 3.96 0.0
R:69 [LYS] 0:2842 [G] 4.28 0.0
R:70 [SER] 0:2831 [C] 4.63 0:2909 [G] 0.0
R:70 [SER] 0:2842 [G] 3.6 0.0
R:70 [SER] 0:2843 [A] 3.11 0:2838 [A] 0.0
R:71 [LYS] 0:2831 [C] 3.11 0:2909 [G] 0.0
R:71 [LYS] 0:2832 [C] 2.85 0:2848 [G] 0.0
R:72 [VAL] 0:2659 [U] 4.96 0:2085 [A] 0.0
R:72 [VAL] 0:2660 [G] 4.08 0:2084 [C] 0.0
R:73 [ASP] 0:2660 [G] 4.22 0:2084 [C] 0.0
R:74 [GLY] 0:11 [A] 4.18 0.0
R:74 [GLY] 0:2659 [U] 4.32 0:2085 [A] 0.0
R:74 [GLY] 0:2660 [G] 3.2 0:2084 [C] 0.0
R:75 [TRP] 0:11 [A] 3.63 0.0
R:75 [TRP] 0:12 [U] 3.61 0:531 [G] 0.0
R:75 [TRP] 0:2086 [C] 3.52 0:2658 [G] 0.0
R:75 [TRP] 0:2659 [U] 2.92 0:2085 [A] 0.0
R:75 [TRP] 0:2660 [G] 4.05 0:2084 [C] 0.0
R:76 [ASP] 0:2086 [C] 4.13 0:2658 [G] 0.0
R:76 [ASP] 0:2087 [C] 3.64 0:2657 [G] 0.0
R:76 [ASP] 0:2658 [G] 2.92 0:2086 [C] base:SC 0.0
R:76 [ASP] 0:2659 [U] 3.16 0:2085 [A] 0.0
R:77 [ALA] 0:2087 [C] 4.99 0:2657 [G] 0.0
R:78 [GLY] 0:2049 [C] 4.03 0:1726 [G] 0.0
R:79 [ARG] 0:1370 [G] 3.68 0:1371 [U] sugar:SC 0.0
R:79 [ARG] 0:1371 [U] 3.12 0:1370 [G] 0.0
R:79 [ARG] 0:2049 [C] 2.98 0:1726 [G] 0.0
R:79 [ARG] 0:2050 [G] 3.37 0:1725 [C] 0.0
R:80 [TYR] 0:2049 [C] 3.48 0:1726 [G] 0.0
R:80 [TYR] 0:2050 [G] 2.7 0:1725 [C] 0.0
R:80 [TYR] 0:2051 [G] 4.71 0:1374 [C] 0.0
R:81 [PRO] 0:2050 [G] 3.7 0:1725 [C] 0.0
R:81 [PRO] 0:2051 [G] 3.62 0:1374 [C] 0.0
R:82 [GLU] 0:2050 [G] 3.16 0:1725 [C] sugar:SC 0.0
R:82 [GLU] 0:2051 [G] 3.41 0:1374 [C] 0.0
R:83 [LYS] 0:1433 [G] 4.65 0.0
R:83 [LYS] 0:2050 [G] 4.46 0:1725 [C] 0.0
R:83 [LYS] 0:2051 [G] 3.13 0:1374 [C] 0.0
R:83 [LYS] 0:2052 [U] 2.61 0:1373 [G] 0.0
R:84 [ALA] 0:2051 [G] 4.47 0:1374 [C] 0.0
R:93 [GLU] 0:493 [U] 4.7 0:499 [G] 0.0
R:93 [GLU] 0:494 [C] 3.78 0:498 [A] 0.0
R:94 [ASN] 0:493 [U] 4.17 0:499 [G] 0.0
R:94 [ASN] 0:499 [G] 3.48 0:493 [U] 0.0
R:94 [ASN] 0:500 [G] 2.48 0:492 [C] base:SC, sugar:SC 0.0
R:94 [ASN] 0:501 [G] 4.42 0:491 [C] 0.0
R:98 [ASN] 0:492 [C] 4.63 0:500 [G] 0.0
R:98 [ASN] 0:500 [G] 3.07 0:492 [C] base:SC 0.0
R:98 [ASN] 0:501 [G] 2.79 0:491 [C] 0.0
R:101 [HIS] 0:491 [C] 4.51 0:501 [G] 0.0
R:101 [HIS] 0:492 [C] 3.32 0:500 [G] 0.0
R:101 [HIS] 0:501 [G] 4.24 0:491 [C] 0.0
R:102 [GLN] 0:501 [G] 3.66 0:491 [C] sugar:SC 0.0
R:102 [GLN] 0:502 [A] 4.94 0:490 [C] 0.0
R:113 [HIS] 0:525 [G] 3.41 0:18 [C] sugar:SC 0.0
R:114 [VAL] 0:525 [G] 4.8 0:18 [C] 0.0
R:115 [ALA] 0:524 [A] 3.39 0:19 [U] 0.0
R:115 [ALA] 0:525 [G] 3.7 0:18 [C] 0.0
R:116 [ALA] 0:524 [A] 2.67 0:19 [U] sugar:BB 0.0
R:117 [HIS] 0:20 [G] 3.26 0:523 [C] 0.0
R:117 [HIS] 0:21 [G] 4.25 0:522 [U] 0.0
R:117 [HIS] 0:524 [A] 3.47 0:19 [U] base:SC 0.0
R:118 [LYS] 0:21 [G] 3.89 0:522 [U] 0.0
R:118 [LYS] 0:22 [U] 4.2 0:521 [A] 0.0
R:118 [LYS] 0:1366 [C] 4.61 0:2058 [G] 0.0
R:119 [VAL] 0:21 [G] 3.71 0:522 [U] 0.0
R:119 [VAL] 0:22 [U] 3.35 0:521 [A] 0.0
R:120 [GLY] 0:22 [U] 4.93 0:521 [A] 0.0
R:122 [GLN] 0:1427 [A] 4.46 0.0
R:122 [GLN] 0:1428 [C] 3.04 0.0
R:122 [GLN] 0:1429 [U] 4.19 0:1437 [A] 0.0
R:123 [GLN] 0:1429 [U] 4.52 0:1437 [A] 0.0
R:125 [ARG] 0:1430 [G] 4.97 0:1436 [C] 0.0
R:126 [LYS] 0:1431 [C] 3.43 0.0
R:127 [PRO] 0:841 [A] 4.84 0.0
R:127 [PRO] 0:1689 [A] 3.41 0.0
R:127 [PRO] 0:1690 [C] 3.46 0.0
R:128 [ARG] 0:840 [U] 3.27 0:2055 [A] 0.0
R:128 [ARG] 0:841 [A] 3.1 0.0
R:128 [ARG] 0:843 [A] 3.88 0:838 [C] 0.0
R:128 [ARG] 0:844 [A] 4.55 0.0
R:128 [ARG] 0:1372 [A] 4.43 0:2053 [G] 0.0
R:128 [ARG] 0:1689 [A] 3.01 base:BB 0.0
R:128 [ARG] 0:1690 [C] 4.3 0.0
R:128 [ARG] 0:2054 [A] 2.29 0:2648 [U] base:SC 0.0
R:128 [ARG] 0:2055 [A] 3.33 0:840 [U] sugar:SC 0.0
R:128 [ARG] 0:2648 [U] 3.46 0:2054 [A] base:SC 0.0
R:129 [ALA] 0:840 [U] 3.39 0:2055 [A] 0.0
R:129 [ALA] 0:841 [A] 3.07 0.0
R:129 [ALA] 0:843 [A] 3.63 0:838 [C] 0.0
R:129 [ALA] 0:844 [A] 3.67 0.0
R:130 [MET] 0:840 [U] 4.97 0:2055 [A] 0.0
R:130 [MET] 0:841 [A] 3.69 0.0
R:130 [MET] 0:844 [A] 2.91 0.0
R:131 [GLY] 0:844 [A] 3.66 0.0
R:131 [GLY] 0:1689 [A] 3.73 0.0
R:132 [ARG] 0:840 [U] 4.3 0:2055 [A] 0.0
R:132 [ARG] 0:1689 [A] 2.92 0.0
R:132 [ARG] 0:2055 [A] 3.12 0:840 [U] sugar:SC 0.0
R:132 [ARG] 0:2056 [C] 4.77 0:1368 [U] 0.0
R:133 [ALA] 0:1689 [A] 3.69 0.0
R:134 [SER] 0:2054 [A] 2.57 0:2648 [U] sugar:SC 0.0
R:134 [SER] 0:2055 [A] 3.82 0:840 [U] 0.0
R:135 [ALA] 0:2053 [G] 4.46 0:1372 [A] 0.0
R:135 [ALA] 0:2054 [A] 2.52 0:2648 [U] sugar:BB 0.0
R:135 [ALA] 0:2055 [A] 3.77 0:840 [U] 0.0
R:136 [TRP] 0:1372 [A] 3.59 0:2053 [G] 0.0
R:136 [TRP] 0:1373 [G] 3.23 0:2052 [U] 0.0
R:136 [TRP] 0:1431 [C] 4.3 0.0
R:136 [TRP] 0:2052 [U] 4.01 0:1373 [G] 0.0
R:136 [TRP] 0:2053 [G] 3.4 0:1372 [A] 0.0
R:136 [TRP] 0:2054 [A] 3.81 0:2648 [U] 0.0
R:137 [ASN] 0:2053 [G] 3.16 0:1372 [A] 0.0
R:137 [ASN] 0:2054 [A] 2.95 0:2648 [U] 0.0
R:138 [SER] 0:2052 [U] 4.7 0:1373 [G] 0.0
R:138 [SER] 0:2053 [G] 2.51 0:1372 [A] 0.0
R:139 [PRO] 0:1370 [G] 3.42 0:1371 [U] 0.0
R:139 [PRO] 0:2053 [G] 4.2 0:1372 [A] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group134 1VQ8_R_0 R: 50s ribosomal protein l22p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P10970 Ribosomal protein L22 Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_R_0 7ASM_Q_A 0.76 0.9 1.52 0.28 Ribosomal protein L22 compare
1VQ8_R_0 6AZ3_T_1,2 0.76 0.8 1.5 0.28 Ribosomal protein L22 compare
1VQ8_R_0 6S0Z_Q_A 0.64 0.92 1.69 0.22 Ribosomal protein L22 compare
1VQ8_R_0 7O7Y_BP_B5,B8 0.80 0.94 1.51 0.35 Ribosomal protein L22 compare
1VQ8_R_0 6AZ3_T_5 0.69 0.88 1.88 0.07 Ribosomal protein L22 compare
1VQ8_R_0 4Y4O_1W_1A 0.70 0.92 1.91 0.22 Ribosomal protein L22 compare
1VQ8_R_0 7O9M_T_A 0.65 0.91 2.65 0.09 Ribosomal protein L22 compare
1VQ8_R_0 7RYG_R_A 0.74 0.92 1.5 0.29 Ribosomal protein L22 compare
1VQ8_R_0 1YHQ_R_0 0.99 1.0 0.18 0.98 Ribosomal protein L22 Archaeal large subunit ribosomal RNA compare
1VQ8_R_0 7K00_r_a 0.72 0.91 2.03 0.26 Ribosomal protein L22 compare
1VQ8_R_0 7OF0_T_A 0.67 0.93 2.73 0.09 Ribosomal protein L22 compare