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All interfaces > All interologs > Interface groups > group134 > 1VQ8_R_0 vs 1YHQ_R_0

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Licorice
Surface

RNA

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Licorice
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Common contacts -

1VQ8_R
1VQ8_0
1YHQ_R
1YHQ_0
Conserved?
R:66 [VAL] 0:2049 [C] R:66 [VAL] 0:2049 [C] ✔
R:66 [VAL] 0:2087 [C] R:66 [VAL] 0:2087 [C] ✔
R:66 [VAL] 0:2088 [C] R:66 [VAL] 0:2088 [C] ✔
R:19 [ARG] 0:499 [G] R:19 [ARG] 0:499 [G] ✔
R:19 [ARG] 0:500 [G] R:19 [ARG] 0:500 [G] ✔
R:63 [ASN] 0:1370 [G] R:63 [ASN] 0:1370 [G] ✔
R:63 [ASN] 0:2087 [C] R:63 [ASN] 0:2087 [C] ✔
R:63 [ASN] 0:2088 [C] R:63 [ASN] 0:2088 [C] ✔
R:132 [ARG] 0:840 [U] R:132 [ARG] 0:840 [U] ✔
R:132 [ARG] 0:1689 [A] R:132 [ARG] 0:1689 [A] ✔
R:132 [ARG] 0:2055 [A] R:132 [ARG] 0:2055 [A] ✔
R:132 [ARG] 0:2056 [C] R:132 [ARG] 0:2056 [C] ✔
R:6 [VAL] 0:19 [U] R:6 [VAL] 0:19 [U] ✔
R:137 [ASN] 0:2053 [G] R:137 [ASN] 0:2053 [G] ✔
R:137 [ASN] 0:2054 [A] R:137 [ASN] 0:2054 [A] ✔
R:136 [TRP] 0:1372 [A] R:136 [TRP] 0:1372 [A] ✔
R:136 [TRP] 0:1373 [G] R:136 [TRP] 0:1373 [G] ✔
R:136 [TRP] 0:1431 [C] R:136 [TRP] 0:1431 [C] ✔
R:136 [TRP] 0:2052 [U] R:136 [TRP] 0:2052 [U] ✔
R:136 [TRP] 0:2053 [G] R:136 [TRP] 0:2053 [G] ✔
R:136 [TRP] 0:2054 [A] R:136 [TRP] 0:2054 [A] ✔
R:128 [ARG] 0:840 [U] R:128 [ARG] 0:840 [U] ✔
R:128 [ARG] 0:841 [A] R:128 [ARG] 0:841 [A] ✔
R:128 [ARG] 0:843 [A] R:128 [ARG] 0:843 [A] ✔
R:128 [ARG] 0:844 [A] R:128 [ARG] 0:844 [A] ✔
R:128 [ARG] 0:1372 [A] R:128 [ARG] 0:1372 [A] ✔
R:128 [ARG] 0:1689 [A] R:128 [ARG] 0:1689 [A] ✔
R:128 [ARG] 0:1690 [C] R:128 [ARG] 0:1690 [C] ✔
R:128 [ARG] 0:2054 [A] R:128 [ARG] 0:2054 [A] ✔
R:128 [ARG] 0:2055 [A] R:128 [ARG] 0:2055 [A] ✔
R:128 [ARG] 0:2648 [U] R:128 [ARG] 0:2648 [U] ✔
R:116 [ALA] 0:524 [A] R:116 [ALA] 0:524 [A] ✔
R:76 [ASP] 0:2086 [C] R:76 [ASP] 0:2086 [C] ✔
R:76 [ASP] 0:2087 [C] R:76 [ASP] 0:2087 [C] ✔
R:76 [ASP] 0:2658 [G] R:76 [ASP] 0:2658 [G] ✔
R:76 [ASP] 0:2659 [U] R:76 [ASP] 0:2659 [U] ✔
R:130 [MET] 0:841 [A] R:130 [MET] 0:841 [A] ✔
R:130 [MET] 0:844 [A] R:130 [MET] 0:844 [A] ✔
R:60 [LYS] 0:11 [A] R:60 [LYS] 0:11 [A] ✔
R:60 [LYS] 0:12 [U] R:60 [LYS] 0:12 [U] ✔
R:60 [LYS] 0:13 [G] R:60 [LYS] 0:13 [G] ✔
R:131 [GLY] 0:844 [A] R:131 [GLY] 0:844 [A] ✔
R:131 [GLY] 0:1689 [A] R:131 [GLY] 0:1689 [A] ✔
R:126 [LYS] 0:1431 [C] R:126 [LYS] 0:1431 [C] ✔
R:117 [HIS] 0:20 [G] R:117 [HIS] 0:20 [G] ✔
R:117 [HIS] 0:21 [G] R:117 [HIS] 0:21 [G] ✔
R:117 [HIS] 0:524 [A] R:117 [HIS] 0:524 [A] ✔
R:74 [GLY] 0:11 [A] R:74 [GLY] 0:11 [A] ✔
R:74 [GLY] 0:2659 [U] R:74 [GLY] 0:2659 [U] ✔
R:74 [GLY] 0:2660 [G] R:74 [GLY] 0:2660 [G] ✔
R:36 [LYS] 0:525 [G] R:36 [LYS] 0:525 [G] ✔
R:36 [LYS] 0:526 [U] R:36 [LYS] 0:526 [U] ✔
R:98 [ASN] 0:492 [C] R:98 [ASN] 0:492 [C] ✔
R:98 [ASN] 0:500 [G] R:98 [ASN] 0:500 [G] ✔
R:98 [ASN] 0:501 [G] R:98 [ASN] 0:501 [G] ✔
R:27 [HIS] 0:1370 [G] R:27 [HIS] 0:1370 [G] ✔
R:27 [HIS] 0:2051 [G] R:27 [HIS] 0:2051 [G] ✔
R:94 [ASN] 0:493 [U] R:94 [ASN] 0:493 [U] ✔
R:94 [ASN] 0:499 [G] R:94 [ASN] 0:499 [G] ✔
R:94 [ASN] 0:500 [G] R:94 [ASN] 0:500 [G] ✔
R:94 [ASN] 0:501 [G] R:94 [ASN] 0:501 [G] ✔
R:65 [GLY] 0:2048 [C] R:65 [GLY] 0:2048 [C] ✔
R:65 [GLY] 0:2087 [C] R:65 [GLY] 0:2087 [C] ✔
R:65 [GLY] 0:2088 [C] R:65 [GLY] 0:2088 [C] ✔
R:65 [GLY] 0:2089 [A] R:65 [GLY] 0:2089 [A] ✔
R:61 [GLN] 0:12 [U] R:61 [GLN] 0:12 [U] ✔
R:61 [GLN] 0:13 [G] R:61 [GLN] 0:13 [G] ✔
R:61 [GLN] 0:524 [A] R:61 [GLN] 0:524 [A] ✔
R:61 [GLN] 0:1370 [G] R:61 [GLN] 0:1370 [G] ✔
R:26 [LYS] 0:1368 [U] R:26 [LYS] 0:1368 [U] ✔
R:26 [LYS] 0:1369 [A] R:26 [LYS] 0:1369 [A] ✔
R:26 [LYS] 0:1370 [G] R:26 [LYS] 0:1370 [G] ✔
R:79 [ARG] 0:1370 [G] R:79 [ARG] 0:1370 [G] ✔
R:79 [ARG] 0:1371 [U] R:79 [ARG] 0:1371 [U] ✔
R:79 [ARG] 0:2049 [C] R:79 [ARG] 0:2049 [C] ✔
R:79 [ARG] 0:2050 [G] R:79 [ARG] 0:2050 [G] ✔
R:80 [TYR] 0:2049 [C] R:80 [TYR] 0:2049 [C] ✔
R:80 [TYR] 0:2050 [G] R:80 [TYR] 0:2050 [G] ✔
R:80 [TYR] 0:2051 [G] R:80 [TYR] 0:2051 [G] ✔
R:69 [LYS] 0:2048 [C] R:69 [LYS] 0:2048 [C] ✔
R:69 [LYS] 0:2049 [C] R:69 [LYS] 0:2049 [C] ✔
R:69 [LYS] 0:2841 [A] R:69 [LYS] 0:2841 [A] ✔
R:69 [LYS] 0:2842 [G] R:69 [LYS] 0:2842 [G] ✔
R:133 [ALA] 0:1689 [A] R:133 [ALA] 0:1689 [A] ✔
R:22 [GLN] 0:1427 [A] R:22 [GLN] 0:1427 [A] ✔
R:22 [GLN] 0:1428 [C] R:22 [GLN] 0:1428 [C] ✔
R:22 [GLN] 0:2052 [U] R:22 [GLN] 0:2052 [U] ✔
R:93 [GLU] 0:493 [U] R:93 [GLU] 0:493 [U] ✔
R:93 [GLU] 0:494 [C] R:93 [GLU] 0:494 [C] ✔
R:81 [PRO] 0:2050 [G] R:81 [PRO] 0:2050 [G] ✔
R:81 [PRO] 0:2051 [G] R:81 [PRO] 0:2051 [G] ✔
R:33 [ARG] 0:12 [U] R:33 [ARG] 0:12 [U] ✔
R:33 [ARG] 0:525 [G] R:33 [ARG] 0:525 [G] ✔
R:129 [ALA] 0:840 [U] R:129 [ALA] 0:840 [U] ✔
R:129 [ALA] 0:841 [A] R:129 [ALA] 0:841 [A] ✔
R:129 [ALA] 0:843 [A] R:129 [ALA] 0:843 [A] ✔
R:129 [ALA] 0:844 [A] R:129 [ALA] 0:844 [A] ✔
R:135 [ALA] 0:2053 [G] R:135 [ALA] 0:2053 [G] ✔
R:135 [ALA] 0:2054 [A] R:135 [ALA] 0:2054 [A] ✔
R:135 [ALA] 0:2055 [A] R:135 [ALA] 0:2055 [A] ✔
R:17 [MET] 0:499 [G] R:17 [MET] 0:499 [G] ✔
R:17 [MET] 0:500 [G] R:17 [MET] 0:500 [G] ✔
R:17 [MET] 0:501 [G] R:17 [MET] 0:501 [G] ✔
R:3 [SER] 0:20 [G] R:3 [SER] 0:20 [G] ✔
R:3 [SER] 0:21 [G] R:3 [SER] 0:21 [G] ✔
R:3 [SER] 0:510 [U] R:3 [SER] 0:510 [U] ✔
R:15 [LYS] 0:500 [G] R:15 [LYS] 0:500 [G] ✔
R:15 [LYS] 0:501 [G] R:15 [LYS] 0:501 [G] ✔
R:15 [LYS] 0:502 [A] R:15 [LYS] 0:502 [A] ✔
R:139 [PRO] 0:1370 [G] R:139 [PRO] 0:1370 [G] ✔
R:139 [PRO] 0:2053 [G] R:139 [PRO] 0:2053 [G] ✔
R:114 [VAL] 0:525 [G] R:114 [VAL] 0:525 [G] ✔
R:102 [GLN] 0:501 [G] R:102 [GLN] 0:501 [G] ✔
R:102 [GLN] 0:502 [A] R:102 [GLN] 0:502 [A] ✔
R:23 [MET] 0:1370 [G] R:23 [MET] 0:1370 [G] ✔
R:23 [MET] 0:2052 [U] R:23 [MET] 0:2052 [U] ✔
R:1 [GLY] 0:21 [G] R:1 [GLY] 0:21 [G] ✔
R:1 [GLY] 0:22 [U] R:1 [GLY] 0:22 [U] ✔
R:77 [ALA] 0:2087 [C] R:77 [ALA] 0:2087 [C] ✔
R:5 [SER] 0:19 [U] R:5 [SER] 0:19 [U] ✔
R:5 [SER] 0:20 [G] R:5 [SER] 0:20 [G] ✔
R:127 [PRO] 0:1689 [A] R:127 [PRO] 0:1689 [A] ✔
R:127 [PRO] 0:1690 [C] R:127 [PRO] 0:1690 [C] ✔
R:71 [LYS] 0:2831 [C] R:71 [LYS] 0:2831 [C] ✔
R:71 [LYS] 0:2832 [C] R:71 [LYS] 0:2832 [C] ✔
R:70 [SER] 0:2831 [C] R:70 [SER] 0:2831 [C] ✔
R:70 [SER] 0:2842 [G] R:70 [SER] 0:2842 [G] ✔
R:70 [SER] 0:2843 [A] R:70 [SER] 0:2843 [A] ✔
R:115 [ALA] 0:524 [A] R:115 [ALA] 0:524 [A] ✔
R:115 [ALA] 0:525 [G] R:115 [ALA] 0:525 [G] ✔
R:75 [TRP] 0:11 [A] R:75 [TRP] 0:11 [A] ✔
R:75 [TRP] 0:12 [U] R:75 [TRP] 0:12 [U] ✔
R:75 [TRP] 0:2086 [C] R:75 [TRP] 0:2086 [C] ✔
R:75 [TRP] 0:2659 [U] R:75 [TRP] 0:2659 [U] ✔
R:75 [TRP] 0:2660 [G] R:75 [TRP] 0:2660 [G] ✔
R:118 [LYS] 0:21 [G] R:118 [LYS] 0:21 [G] ✔
R:118 [LYS] 0:22 [U] R:118 [LYS] 0:22 [U] ✔
R:118 [LYS] 0:1366 [C] R:118 [LYS] 0:1366 [C] ✔
R:67 [GLY] 0:2048 [C] R:67 [GLY] 0:2048 [C] ✔
R:67 [GLY] 0:2049 [C] R:67 [GLY] 0:2049 [C] ✔
R:67 [GLY] 0:2841 [A] R:67 [GLY] 0:2841 [A] ✔
R:113 [HIS] 0:525 [G] R:113 [HIS] 0:525 [G] ✔
R:84 [ALA] 0:2051 [G] R:84 [ALA] 0:2051 [G] ✔
R:24 [SER] 0:1370 [G] R:24 [SER] 0:1370 [G] ✔
R:24 [SER] 0:2052 [U] R:24 [SER] 0:2052 [U] ✔
R:78 [GLY] 0:2049 [C] R:78 [GLY] 0:2049 [C] ✔
R:4 [TYR] 0:19 [U] R:4 [TYR] 0:19 [U] ✔
R:4 [TYR] 0:20 [G] R:4 [TYR] 0:20 [G] ✔
R:4 [TYR] 0:500 [G] R:4 [TYR] 0:500 [G] ✔
R:4 [TYR] 0:501 [G] R:4 [TYR] 0:501 [G] ✔
R:4 [TYR] 0:510 [U] R:4 [TYR] 0:510 [U] ✔
R:122 [GLN] 0:1427 [A] R:122 [GLN] 0:1427 [A] ✔
R:122 [GLN] 0:1428 [C] R:122 [GLN] 0:1428 [C] ✔
R:122 [GLN] 0:1429 [U] R:122 [GLN] 0:1429 [U] ✔
R:25 [PHE] 0:523 [C] R:25 [PHE] 0:523 [C] ✔
R:25 [PHE] 0:524 [A] R:25 [PHE] 0:524 [A] ✔
R:25 [PHE] 0:1370 [G] R:25 [PHE] 0:1370 [G] ✔
R:82 [GLU] 0:2050 [G] R:82 [GLU] 0:2050 [G] ✔
R:82 [GLU] 0:2051 [G] R:82 [GLU] 0:2051 [G] ✔
R:62 [HIS] 0:524 [A] R:62 [HIS] 0:524 [A] ✔
R:62 [HIS] 0:1367 [A] R:62 [HIS] 0:1367 [A] ✔
R:62 [HIS] 0:1370 [G] R:62 [HIS] 0:1370 [G] ✔
R:18 [LEU] 0:499 [G] R:18 [LEU] 0:499 [G] ✔
R:72 [VAL] 0:2659 [U] R:72 [VAL] 0:2659 [U] ✔
R:72 [VAL] 0:2660 [G] R:72 [VAL] 0:2660 [G] ✔
R:73 [ASP] 0:2660 [G] R:73 [ASP] 0:2660 [G] ✔
R:138 [SER] 0:2052 [U] R:138 [SER] 0:2052 [U] ✔
R:138 [SER] 0:2053 [G] R:138 [SER] 0:2053 [G] ✔
R:134 [SER] 0:2054 [A] R:134 [SER] 0:2054 [A] ✔
R:134 [SER] 0:2055 [A] R:134 [SER] 0:2055 [A] ✔
R:101 [HIS] 0:491 [C] R:101 [HIS] 0:491 [C] ✔
R:101 [HIS] 0:492 [C] R:101 [HIS] 0:492 [C] ✔
R:101 [HIS] 0:501 [G] R:101 [HIS] 0:501 [G] ✔
R:2 [ILE] 0:20 [G] R:2 [ILE] 0:20 [G] ✔
R:2 [ILE] 0:21 [G] R:2 [ILE] 0:21 [G] ✔
R:83 [LYS] 0:1433 [G] R:83 [LYS] 0:1433 [G] ✔
R:83 [LYS] 0:2050 [G] R:83 [LYS] 0:2050 [G] ✔
R:83 [LYS] 0:2051 [G] R:83 [LYS] 0:2051 [G] ✔
R:83 [LYS] 0:2052 [U] R:83 [LYS] 0:2052 [U] ✔
R:68 [HIS] 0:2087 [C] R:68 [HIS] 0:2087 [C] ✔
R:68 [HIS] 0:2088 [C] R:68 [HIS] 0:2088 [C] ✔
R:68 [HIS] 0:2657 [G] R:68 [HIS] 0:2657 [G] ✔
R:68 [HIS] 0:2658 [G] R:68 [HIS] 0:2658 [G] ✔
R:68 [HIS] 0:2659 [U] R:68 [HIS] 0:2659 [U] ✔
R:68 [HIS] 0:2841 [A] R:68 [HIS] 0:2841 [A] ✔
R:68 [HIS] 0:2842 [G] R:68 [HIS] 0:2842 [G] ✔
R:120 [GLY] 0:22 [U] R:120 [GLY] 0:22 [U] ✔
R:29 [LYS] 0:523 [C] R:29 [LYS] 0:523 [C] ✔
R:29 [LYS] 0:524 [A] R:29 [LYS] 0:524 [A] ✔
R:29 [LYS] 0:525 [G] R:29 [LYS] 0:525 [G] ✔
R:64 [SER] 0:1369 [A] R:64 [SER] 0:1369 [A] ✔
R:64 [SER] 0:1370 [G] R:64 [SER] 0:1370 [G] ✔
R:64 [SER] 0:1371 [U] R:64 [SER] 0:1371 [U] ✔
R:64 [SER] 0:2087 [C] R:64 [SER] 0:2087 [C] ✔
R:64 [SER] 0:2088 [C] R:64 [SER] 0:2088 [C] ✔
R:16 [ALA] 0:500 [G] R:16 [ALA] 0:500 [G] ✔
R:16 [ALA] 0:501 [G] R:16 [ALA] 0:501 [G] ✔
R:123 [GLN] 0:1429 [U] R:123 [GLN] 0:1429 [U] ✔
R:119 [VAL] 0:21 [G] R:119 [VAL] 0:21 [G] ✔
R:119 [VAL] 0:22 [U] R:119 [VAL] 0:22 [U] ✔
R:63 [ASN] 0:2086 [C] R:63 [ASN] 0:2086 [C] ❌ 1YHQ_R_0
R:130 [MET] 0:840 [U] R:130 [MET] 0:840 [U] ❌ 1YHQ_R_0
R:65 [GLY] 0:1371 [U] R:65 [GLY] 0:1371 [U] ❌ 1YHQ_R_0
R:127 [PRO] 0:841 [A] R:127 [PRO] 0:841 [A] ❌ 1YHQ_R_0
R:126 [LYS] 0:1373 [G] R:126 [LYS] 0:1373 [G] ❌ 1VQ8_R_0
R:66 [VAL] 0:2048 [C] R:66 [VAL] 0:2048 [C] ❌ 1VQ8_R_0
R:66 [VAL] 0:1370 [G] R:66 [VAL] 0:1370 [G] ❌ 1VQ8_R_0
R:125 [ARG] 0:1430 [G] R:125 [ARG] 0:1430 [G] ❌ 1YHQ_R:125, 1YHQ_0:1430 no longer at interface
R:119 [VAL] 0:23 [G] R:119 [VAL] 0:23 [G] ❌ 1VQ8_0:23 no longer at interface
R:121 [GLU] 0:2054 [A] R:121 [GLU] 0:2054 [A] ❌ 1VQ8_R:121 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L22 Archaeal large subunit ribosomal RNA 1.0 0.18 0.98 1.0 1.0 0.99 0.98 0.99 0.98 0.89 0.30


Other pairs involving 1VQ8_R_0 or 1YHQ_R_0

Total number of entries: 21

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_R_0 7ASM_Q_A 0.76 0.9 1.52 0.28 Ribosomal protein L22 compare
1VQ8_R_0 6AZ3_T_1,2 0.76 0.8 1.5 0.28 Ribosomal protein L22 compare
1VQ8_R_0 6S0Z_Q_A 0.64 0.92 1.69 0.22 Ribosomal protein L22 compare
1VQ8_R_0 7O7Y_BP_B5,B8 0.80 0.94 1.51 0.35 Ribosomal protein L22 compare
1VQ8_R_0 6AZ3_T_5 0.69 0.88 1.88 0.07 Ribosomal protein L22 compare
1VQ8_R_0 4Y4O_1W_1A 0.70 0.92 1.91 0.22 Ribosomal protein L22 compare
1VQ8_R_0 7O9M_T_A 0.65 0.91 2.65 0.09 Ribosomal protein L22 compare
1VQ8_R_0 7RYG_R_A 0.74 0.92 1.5 0.29 Ribosomal protein L22 compare
1VQ8_R_0 1YHQ_R_0 0.99 1.0 0.18 0.98 Ribosomal protein L22 Archaeal large subunit ribosomal RNA compare
1VQ8_R_0 7K00_r_a 0.72 0.91 2.03 0.26 Ribosomal protein L22 compare
1VQ8_R_0 7OF0_T_A 0.67 0.93 2.73 0.09 Ribosomal protein L22 compare
1YHQ_R_0 7ASM_Q_A 0.76 0.9 1.49 0.28 Ribosomal protein L22 compare
1YHQ_R_0 7RYG_R_A 0.74 0.92 1.41 0.29 Ribosomal protein L22 compare
1YHQ_R_0 4Y4O_1W_1A 0.70 0.92 1.84 0.22 Ribosomal protein L22 compare
1YHQ_R_0 6S0Z_Q_A 0.64 0.92 1.66 0.22 Ribosomal protein L22 compare
1YHQ_R_0 7O9M_T_A 0.64 0.91 2.58 0.09 Ribosomal protein L22 compare
1YHQ_R_0 7O7Y_BP_B5,B8 0.78 0.94 1.47 0.33 Ribosomal protein L22 compare
1YHQ_R_0 7K00_r_a 0.71 0.91 1.91 0.26 Ribosomal protein L22 compare
1YHQ_R_0 6AZ3_T_5 0.66 0.88 2.04 0.07 Ribosomal protein L22 compare
1YHQ_R_0 6AZ3_T_1,2 0.75 0.8 1.43 0.27 Ribosomal protein L22 compare
1YHQ_R_0 7OF0_T_A 0.65 0.93 2.63 0.09 Ribosomal protein L22 compare