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All interfaces > All interologs > Interface groups > group134 > 1VQ8_R_0 vs 4Y4O_1W_1A

Interface analysis


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Common contacts -

1VQ8_R
1VQ8_0
4Y4O_1W
4Y4O_1A
Conserved?
R:19 [ARG] 0:499 [G] 1W:8 [ARG] 1A:518 [G] ✔
R:19 [ARG] 0:500 [G] 1W:8 [ARG] 1A:519 [G] ✔
R:132 [ARG] 0:840 [U] 1W:92 [ARG] 1A:794 [U] ✔
R:132 [ARG] 0:1689 [A] 1W:92 [ARG] 1A:1660 [A] ✔
R:132 [ARG] 0:2055 [A] 1W:92 [ARG] 1A:2036 [A] ✔
R:132 [ARG] 0:2056 [C] 1W:92 [ARG] 1A:2037 [A] ✔
R:137 [ASN] 0:2053 [G] 1W:97 [LYS] 1A:2034 [G] ✔
R:137 [ASN] 0:2054 [A] 1W:97 [LYS] 1A:2035 [A] ✔
R:136 [TRP] 0:1431 [C] 1W:96 [ILE] 1A:1371 [G] ✔
R:136 [TRP] 0:2053 [G] 1W:96 [ILE] 1A:2034 [G] ✔
R:136 [TRP] 0:2054 [A] 1W:96 [ILE] 1A:2035 [A] ✔
R:128 [ARG] 0:840 [U] 1W:88 [ARG] 1A:794 [U] ✔
R:128 [ARG] 0:841 [A] 1W:88 [ARG] 1A:795 [G] ✔
R:128 [ARG] 0:843 [A] 1W:88 [ARG] 1A:797 [A] ✔
R:128 [ARG] 0:844 [A] 1W:88 [ARG] 1A:798 [A] ✔
R:128 [ARG] 0:1372 [A] 1W:88 [ARG] 1A:1314 [A] ✔
R:128 [ARG] 0:1689 [A] 1W:88 [ARG] 1A:1660 [A] ✔
R:128 [ARG] 0:1690 [C] 1W:88 [ARG] 1A:1661 [C] ✔
R:128 [ARG] 0:2054 [A] 1W:88 [ARG] 1A:2035 [A] ✔
R:128 [ARG] 0:2055 [A] 1W:88 [ARG] 1A:2036 [A] ✔
R:128 [ARG] 0:2648 [U] 1W:88 [ARG] 1A:2625 [U] ✔
R:116 [ALA] 0:524 [A] 1W:76 [VAL] 1A:543 [G] ✔
R:130 [MET] 0:841 [A] 1W:90 [ARG] 1A:795 [G] ✔
R:130 [MET] 0:844 [A] 1W:90 [ARG] 1A:798 [A] ✔
R:131 [GLY] 0:844 [A] 1W:91 [GLY] 1A:798 [A] ✔
R:131 [GLY] 0:1689 [A] 1W:91 [GLY] 1A:1660 [A] ✔
R:126 [LYS] 0:1431 [C] 1W:86 [LEU] 1A:1371 [G] ✔
R:117 [HIS] 0:20 [G] 1W:77 [ASP] 1A:23 [G] ✔
R:117 [HIS] 0:21 [G] 1W:77 [ASP] 1A:24 [G] ✔
R:117 [HIS] 0:524 [A] 1W:77 [ASP] 1A:543 [G] ✔
R:36 [LYS] 0:525 [G] 1W:25 [ARG] 1A:544 [U] ✔
R:36 [LYS] 0:526 [U] 1W:25 [ARG] 1A:545 [G] ✔
R:98 [ASN] 0:492 [C] 1W:57 [ASN] 1A:512 [C] ✔
R:98 [ASN] 0:500 [G] 1W:57 [ASN] 1A:519 [G] ✔
R:98 [ASN] 0:501 [G] 1W:57 [ASN] 1A:520 [G] ✔
R:27 [HIS] 0:1370 [G] 1W:16 [LYS] 1A:1312 [G] ✔
R:94 [ASN] 0:493 [U] 1W:53 [SER] 1A:513 [C] ✔
R:94 [ASN] 0:499 [G] 1W:53 [SER] 1A:518 [G] ✔
R:94 [ASN] 0:500 [G] 1W:53 [SER] 1A:519 [G] ✔
R:26 [LYS] 0:1369 [A] 1W:15 [ARG] 1A:1311 [A] ✔
R:26 [LYS] 0:1370 [G] 1W:15 [ARG] 1A:1312 [G] ✔
R:133 [ALA] 0:1689 [A] 1W:93 [ALA] 1A:1660 [A] ✔
R:22 [GLN] 0:1428 [C] 1W:11 [ARG] 1A:1368 [A] ✔
R:22 [GLN] 0:2052 [U] 1W:11 [ARG] 1A:2033 [U] ✔
R:93 [GLU] 0:493 [U] 1W:52 [GLU] 1A:513 [C] ✔
R:33 [ARG] 0:525 [G] 1W:22 [ASP] 1A:544 [U] ✔
R:129 [ALA] 0:840 [U] 1W:89 [ALA] 1A:794 [U] ✔
R:129 [ALA] 0:841 [A] 1W:89 [ALA] 1A:795 [G] ✔
R:129 [ALA] 0:843 [A] 1W:89 [ALA] 1A:797 [A] ✔
R:129 [ALA] 0:844 [A] 1W:89 [ALA] 1A:798 [A] ✔
R:135 [ALA] 0:2054 [A] 1W:95 [ILE] 1A:2035 [A] ✔
R:135 [ALA] 0:2055 [A] 1W:95 [ILE] 1A:2036 [A] ✔
R:17 [MET] 0:499 [G] 1W:6 [ILE] 1A:518 [G] ✔
R:17 [MET] 0:500 [G] 1W:6 [ILE] 1A:519 [G] ✔
R:17 [MET] 0:501 [G] 1W:6 [ILE] 1A:520 [G] ✔
R:15 [LYS] 0:500 [G] 1W:4 [LYS] 1A:519 [G] ✔
R:15 [LYS] 0:501 [G] 1W:4 [LYS] 1A:520 [G] ✔
R:139 [PRO] 0:2053 [G] 1W:99 [ARG] 1A:2034 [G] ✔
R:114 [VAL] 0:525 [G] 1W:74 [ALA] 1A:544 [U] ✔
R:102 [GLN] 0:501 [G] 1W:61 [ASN] 1A:520 [G] ✔
R:102 [GLN] 0:502 [A] 1W:61 [ASN] 1A:521 [G] ✔
R:23 [MET] 0:2052 [U] 1W:12 [ILE] 1A:2033 [U] ✔
R:127 [PRO] 0:1689 [A] 1W:87 [PRO] 1A:1660 [A] ✔
R:127 [PRO] 0:1690 [C] 1W:87 [PRO] 1A:1661 [C] ✔
R:115 [ALA] 0:524 [A] 1W:75 [TYR] 1A:543 [G] ✔
R:115 [ALA] 0:525 [G] 1W:75 [TYR] 1A:544 [U] ✔
R:118 [LYS] 0:21 [G] 1W:78 [GLU] 1A:24 [G] ✔
R:118 [LYS] 0:22 [U] 1W:78 [GLU] 1A:25 [U] ✔
R:118 [LYS] 0:1366 [C] 1W:78 [GLU] 1A:1308 [A] ✔
R:113 [HIS] 0:525 [G] 1W:73 [ALA] 1A:544 [U] ✔
R:84 [ALA] 0:2051 [G] 1W:43 [GLY] 1A:2032 [G] ✔
R:24 [SER] 0:1370 [G] 1W:13 [SER] 1A:1312 [G] ✔
R:122 [GLN] 0:1428 [C] 1W:82 [LEU] 1A:1368 [A] ✔
R:82 [GLU] 0:2050 [G] 1W:41 [LYS] 1A:2031 [G] ✔
R:82 [GLU] 0:2051 [G] 1W:41 [LYS] 1A:2032 [G] ✔
R:18 [LEU] 0:499 [G] 1W:7 [ALA] 1A:518 [G] ✔
R:138 [SER] 0:2052 [U] 1W:98 [LYS] 1A:2033 [U] ✔
R:138 [SER] 0:2053 [G] 1W:98 [LYS] 1A:2034 [G] ✔
R:134 [SER] 0:2054 [A] 1W:94 [ASP] 1A:2035 [A] ✔
R:134 [SER] 0:2055 [A] 1W:94 [ASP] 1A:2036 [A] ✔
R:101 [HIS] 0:491 [C] 1W:60 [ASN] 1A:511 [C] ✔
R:101 [HIS] 0:492 [C] 1W:60 [ASN] 1A:512 [C] ✔
R:101 [HIS] 0:501 [G] 1W:60 [ASN] 1A:520 [G] ✔
R:83 [LYS] 0:1433 [G] 1W:42 [ARG] 1A:1373 [C] ✔
R:83 [LYS] 0:2050 [G] 1W:42 [ARG] 1A:2031 [G] ✔
R:83 [LYS] 0:2051 [G] 1W:42 [ARG] 1A:2032 [G] ✔
R:83 [LYS] 0:2052 [U] 1W:42 [ARG] 1A:2033 [U] ✔
R:120 [GLY] 0:22 [U] 1W:80 [PRO] 1A:25 [U] ✔
R:29 [LYS] 0:523 [C] 1W:18 [ARG] 1A:542 [C] ✔
R:29 [LYS] 0:524 [A] 1W:18 [ARG] 1A:543 [G] ✔
R:29 [LYS] 0:525 [G] 1W:18 [ARG] 1A:544 [U] ✔
R:16 [ALA] 0:500 [G] 1W:5 [ALA] 1A:519 [G] ✔
R:16 [ALA] 0:501 [G] 1W:5 [ALA] 1A:520 [G] ✔
R:119 [VAL] 0:21 [G] 1W:79 [GLY] 1A:24 [G] ✔
R:119 [VAL] 0:22 [U] 1W:79 [GLY] 1A:25 [U] ✔
R:136 [TRP] 0:1372 [A] 1W:96 [ILE] 1A:1314 [A] ❌ 4Y4O_1W_1A
R:136 [TRP] 0:2052 [U] 1W:96 [ILE] 1A:2033 [U] ❌ 4Y4O_1W_1A
R:130 [MET] 0:840 [U] 1W:90 [ARG] 1A:794 [U] ❌ 4Y4O_1W_1A
R:27 [HIS] 0:2051 [G] 1W:16 [LYS] 1A:2032 [G] ❌ 4Y4O_1W_1A
R:94 [ASN] 0:501 [G] 1W:53 [SER] 1A:520 [G] ❌ 4Y4O_1W_1A
R:93 [GLU] 0:494 [C] 1W:52 [GLU] 1A:514 [G] ❌ 4Y4O_1W_1A
R:135 [ALA] 0:2053 [G] 1W:95 [ILE] 1A:2034 [G] ❌ 4Y4O_1W_1A
R:15 [LYS] 0:502 [A] 1W:4 [LYS] 1A:521 [G] ❌ 4Y4O_1W_1A
R:139 [PRO] 0:1370 [G] 1W:99 [ARG] 1A:1312 [G] ❌ 4Y4O_1W_1A
R:23 [MET] 0:1370 [G] 1W:12 [ILE] 1A:1312 [G] ❌ 4Y4O_1W_1A
R:127 [PRO] 0:841 [A] 1W:87 [PRO] 1A:795 [G] ❌ 4Y4O_1W_1A
R:24 [SER] 0:2052 [U] 1W:13 [SER] 1A:2033 [U] ❌ 4Y4O_1W_1A
R:122 [GLN] 0:1429 [U] 1W:82 [LEU] 1A:1369 [U] ❌ 4Y4O_1W_1A
R:125 [ARG] 0:1430 [G] 1W:85 [VAL] 1A:1370 [G] ❌ 4Y4O_1W_1A
R:123 [GLN] 0:1429 [U] 1W:83 [LYS] 1A:1369 [U] ❌ 4Y4O_1W_1A
R:22 [GLN] 0:2053 [G] 1W:11 [ARG] 1A:2034 [G] ❌ 1VQ8_R_0
R:24 [SER] 0:2053 [G] 1W:13 [SER] 1A:2034 [G] ❌ 1VQ8_R_0
R:27 [HIS] 0:2052 [U] 1W:16 [LYS] 1A:2033 [U] ❌ 1VQ8_R_0
R:27 [HIS] 0:2053 [G] 1W:16 [LYS] 1A:2034 [G] ❌ 1VQ8_R_0
R:102 [GLN] 0:492 [C] 1W:61 [ASN] 1A:512 [C] ❌ 1VQ8_R_0
R:115 [ALA] 0:20 [G] 1W:75 [TYR] 1A:23 [G] ❌ 1VQ8_R_0
R:117 [HIS] 0:523 [C] 1W:77 [ASP] 1A:542 [C] ❌ 1VQ8_R_0
R:118 [LYS] 0:523 [C] 1W:78 [GLU] 1A:542 [C] ❌ 1VQ8_R_0
R:19 [ARG] 0:22 [U] 1W:8 [ARG] 1A:25 [U] ❌ 1VQ8_R_0
R:125 [ARG] 0:1689 [A] 1W:85 [VAL] 1A:1660 [A] ❌ 1VQ8_R_0
R:126 [LYS] 0:2054 [A] 1W:86 [LEU] 1A:2035 [A] ❌ 1VQ8_R_0
R:137 [ASN] 0:1366 [C] 1W:97 [LYS] 1A:1308 [A] ❌ 1VQ8_R_0
R:138 [SER] 0:1430 [G] 1W:98 [LYS] 1A:1370 [G] ❌ 1VQ8_R_0
R:138 [SER] 0:1429 [U] 1W:98 [LYS] 1A:1369 [U] ❌ 1VQ8_R_0
R:139 [PRO] 0:1366 [C] 1W:99 [ARG] 1A:1308 [A] ❌ 1VQ8_R_0
R:136 [TRP] 0:1373 [G] 1W:96 [ILE] 1A:1315 [A] ❌ 4Y4O_1A:1315 no longer at interface
R:26 [LYS] 0:1368 [U] 1W:15 [ARG] 1A:1310 [G] ❌ 4Y4O_1A:1310 no longer at interface
R:22 [GLN] 0:1427 [A] 1W:11 [ARG] 1A:1367 [A] ❌ 4Y4O_1A:1367 no longer at interface
R:33 [ARG] 0:12 [U] 1W:22 [ASP] 1A:15 [G] ❌ 4Y4O_1A:15 no longer at interface
R:122 [GLN] 0:1427 [A] 1W:82 [LEU] 1A:1367 [A] ❌ 4Y4O_1A:1367 no longer at interface
R:86 [LYS] 0:495 [A] 1W:45 [TYR] 1A:515 [G] ❌ 1VQ8_R:86, 1VQ8_0:495 no longer at interface
R:86 [LYS] 0:497 [A] 1W:45 [TYR] 1A:516 [G] ❌ 1VQ8_R:86, 1VQ8_0:497 no longer at interface
R:86 [LYS] 0:1390 [A] 1W:45 [TYR] 1A:1330 [A] ❌ 1VQ8_R:86, 1VQ8_0:1390 no longer at interface
R:90 [ASP] 0:495 [A] 1W:49 [LYS] 1A:515 [G] ❌ 1VQ8_R:90, 1VQ8_0:495 no longer at interface
R:90 [ASP] 0:497 [A] 1W:49 [LYS] 1A:516 [G] ❌ 1VQ8_R:90, 1VQ8_0:497 no longer at interface
R:18 [LEU] 0:498 [A] 1W:7 [ALA] 1A:517 [A] ❌ 1VQ8_0:498 no longer at interface
R:19 [ARG] 0:498 [A] 1W:8 [ARG] 1A:517 [A] ❌ 1VQ8_0:498 no longer at interface
R:19 [ARG] 0:513 [A] 1W:8 [ARG] 1A:532 [A] ❌ 1VQ8_0:513 no longer at interface
R:19 [ARG] 0:514 [G] 1W:8 [ARG] 1A:533 [G] ❌ 1VQ8_0:514 no longer at interface
R:120 [GLY] 0:514 [G] 1W:80 [PRO] 1A:533 [G] ❌ 1VQ8_0:514 no longer at interface
R:120 [GLY] 0:23 [G] 1W:80 [PRO] 1A:26 [G] ❌ 1VQ8_0:23 no longer at interface
R:121 [GLU] 0:23 [G] 1W:81 [ALA] 1A:26 [G] ❌ 1VQ8_R:121, 1VQ8_0:23 no longer at interface
R:123 [GLN] 0:1365 [C] 1W:83 [LYS] 1A:1307 [C] ❌ 1VQ8_0:1365 no longer at interface
R:123 [GLN] 0:1364 [G] 1W:83 [LYS] 1A:1306 [G] ❌ 1VQ8_0:1364 no longer at interface
R:128 [ARG] 0:2647 [C] 1W:88 [ARG] 1A:2624 [C] ❌ 1VQ8_0:2647 no longer at interface
R:20 [GLU] 0:514 [G] 1W:9 [TYR] 1A:533 [G] ❌ 1VQ8_R:20, 1VQ8_0:514 no longer at interface
R:137 [ASN] 0:1365 [C] 1W:97 [LYS] 1A:1307 [C] ❌ 1VQ8_0:1365 no longer at interface
R:138 [SER] 0:1432 [U] 1W:98 [LYS] 1A:1372 [U] ❌ 1VQ8_0:1432 no longer at interface
R:139 [PRO] 0:1365 [C] 1W:99 [ARG] 1A:1307 [C] ❌ 1VQ8_0:1365 no longer at interface
R:25 [PHE] 0:523 [C] 1W:14 [PRO] 1A:542 [C] ❌ 4Y4O_1W:14 no longer at interface
R:25 [PHE] 0:524 [A] 1W:14 [PRO] 1A:543 [G] ❌ 4Y4O_1W:14 no longer at interface
R:25 [PHE] 0:1370 [G] 1W:14 [PRO] 1A:1312 [G] ❌ 4Y4O_1W:14 no longer at interface
R:142 [ASP] 0:22 [U] 1W:102 [HIS] 1A:25 [U] ❌ 1VQ8_R:142 no longer at interface
R:142 [ASP] 0:21 [G] 1W:102 [HIS] 1A:24 [G] ❌ 1VQ8_R:142 no longer at interface
R:51 [ILE] 0:2049 [C] 1W:40 [ASN] 1A:2030 [C] ❌ 1VQ8_R:51 no longer at interface
R:51 [ILE] 0:2051 [G] 1W:40 [ASN] 1A:2032 [G] ❌ 1VQ8_R:51 no longer at interface
R:51 [ILE] 0:2050 [G] 1W:40 [ASN] 1A:2031 [G] ❌ 1VQ8_R:51 no longer at interface
R:90 [ASP] 0:494 [C] 1W:49 [LYS] 1A:514 [G] ❌ 1VQ8_R:90 no longer at interface
R:90 [ASP] 0:493 [U] 1W:49 [LYS] 1A:513 [C] ❌ 1VQ8_R:90 no longer at interface
R:97 [GLY] 0:493 [U] 1W:56 [ALA] 1A:513 [C] ❌ 1VQ8_R:97 no longer at interface
R:97 [GLY] 0:492 [C] 1W:56 [ALA] 1A:512 [C] ❌ 1VQ8_R:97 no longer at interface
R:124 [GLY] 0:1429 [U] 1W:84 [ARG] 1A:1369 [U] ❌ 1VQ8_R:124 no longer at interface
R:124 [GLY] 0:1428 [C] 1W:84 [ARG] 1A:1368 [A] ❌ 1VQ8_R:124 no longer at interface
R:20 [GLU] 0:499 [G] 1W:9 [TYR] 1A:518 [G] ❌ 1VQ8_R:20 no longer at interface
R:20 [GLU] 0:22 [U] 1W:9 [TYR] 1A:25 [U] ❌ 1VQ8_R:20 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L22 0.92 1.91 0.22 0.89 0.93 0.84 0.78 0.70 0.56 0.33 0.57


Other pairs involving 1VQ8_R_0 or 4Y4O_1W_1A

Total number of entries: 20

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_R_0 7ASM_Q_A 0.76 0.9 1.52 0.28 Ribosomal protein L22 compare
1VQ8_R_0 6AZ3_T_1,2 0.76 0.8 1.5 0.28 Ribosomal protein L22 compare
1VQ8_R_0 6S0Z_Q_A 0.64 0.92 1.69 0.22 Ribosomal protein L22 compare
1VQ8_R_0 7O7Y_BP_B5,B8 0.80 0.94 1.51 0.35 Ribosomal protein L22 compare
1VQ8_R_0 6AZ3_T_5 0.69 0.88 1.88 0.07 Ribosomal protein L22 compare
1VQ8_R_0 4Y4O_1W_1A 0.70 0.92 1.91 0.22 Ribosomal protein L22 compare
1VQ8_R_0 7O9M_T_A 0.65 0.91 2.65 0.09 Ribosomal protein L22 compare
1VQ8_R_0 7RYG_R_A 0.74 0.92 1.5 0.29 Ribosomal protein L22 compare
1VQ8_R_0 1YHQ_R_0 0.99 1.0 0.18 0.98 Ribosomal protein L22 Archaeal large subunit ribosomal RNA compare
1VQ8_R_0 7K00_r_a 0.72 0.91 2.03 0.26 Ribosomal protein L22 compare
1VQ8_R_0 7OF0_T_A 0.67 0.93 2.73 0.09 Ribosomal protein L22 compare
1YHQ_R_0 4Y4O_1W_1A 0.70 0.92 1.84 0.22 Ribosomal protein L22 compare
4Y4O_1W_1A 6S0Z_Q_A 0.74 0.97 1.9 0.65 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7K00_r_a 0.92 0.97 0.75 0.63 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7OF0_T_A 0.78 0.94 1.24 0.26 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7ASM_Q_A 0.93 0.96 1.22 0.68 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7O9M_T_A 0.74 0.92 1.04 0.27 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7RYG_R_A 0.84 0.96 1.0 0.69 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 6AZ3_T_1,2 0.69 0.76 1.78 0.22 Ribosomal protein L22 compare
4Y4O_1W_1A 7O7Y_BP_B5,B8 0.70 0.9 1.56 0.24 Ribosomal protein L22 compare