RNAprotDB

All interfaces > All interologs > Interface groups > group134 > 1VQ8_R_0 vs 7RYG_R_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1VQ8_R
1VQ8_0
7RYG_R
7RYG_A
Conserved?
R:19 [ARG] 0:499 [G] R:8 [ARG] A:492 [G] ✔
R:19 [ARG] 0:500 [G] R:8 [ARG] A:493 [G] ✔
R:132 [ARG] 0:840 [U] R:92 [ARG] A:745 [U] ✔
R:132 [ARG] 0:1689 [A] R:92 [ARG] A:1612 [A] ✔
R:137 [ASN] 0:2053 [G] R:97 [THR] A:2008 [G] ✔
R:137 [ASN] 0:2054 [A] R:97 [THR] A:2009 [A] ✔
R:136 [TRP] 0:2053 [G] R:96 [ILE] A:2008 [G] ✔
R:136 [TRP] 0:2054 [A] R:96 [ILE] A:2009 [A] ✔
R:128 [ARG] 0:840 [U] R:88 [ARG] A:745 [U] ✔
R:128 [ARG] 0:841 [A] R:88 [ARG] A:746 [G] ✔
R:128 [ARG] 0:843 [A] R:88 [ARG] A:748 [A] ✔
R:128 [ARG] 0:844 [A] R:88 [ARG] A:749 [A] ✔
R:128 [ARG] 0:1372 [A] R:88 [ARG] A:1263 [A] ✔
R:128 [ARG] 0:1689 [A] R:88 [ARG] A:1612 [A] ✔
R:128 [ARG] 0:1690 [C] R:88 [ARG] A:1613 [C] ✔
R:128 [ARG] 0:2054 [A] R:88 [ARG] A:2009 [A] ✔
R:128 [ARG] 0:2648 [U] R:88 [ARG] A:2609 [U] ✔
R:116 [ALA] 0:524 [A] R:76 [VAL] A:517 [G] ✔
R:130 [MET] 0:840 [U] R:90 [LYS] A:745 [U] ✔
R:130 [MET] 0:841 [A] R:90 [LYS] A:746 [G] ✔
R:130 [MET] 0:844 [A] R:90 [LYS] A:749 [A] ✔
R:131 [GLY] 0:844 [A] R:91 [GLY] A:749 [A] ✔
R:131 [GLY] 0:1689 [A] R:91 [GLY] A:1612 [A] ✔
R:126 [LYS] 0:1431 [C] R:86 [MET] A:1320 [U] ✔
R:117 [HIS] 0:20 [G] R:77 [ASP] A:30 [G] ✔
R:117 [HIS] 0:21 [G] R:77 [ASP] A:31 [G] ✔
R:117 [HIS] 0:524 [A] R:77 [ASP] A:517 [G] ✔
R:36 [LYS] 0:525 [G] R:25 [ARG] A:518 [C] ✔
R:36 [LYS] 0:526 [U] R:25 [ARG] A:519 [A] ✔
R:98 [ASN] 0:492 [C] R:57 [ASN] A:485 [C] ✔
R:98 [ASN] 0:500 [G] R:57 [ASN] A:493 [G] ✔
R:98 [ASN] 0:501 [G] R:57 [ASN] A:494 [G] ✔
R:27 [HIS] 0:1370 [G] R:16 [LYS] A:1261 [G] ✔
R:94 [ASN] 0:493 [U] R:53 [SER] A:486 [C] ✔
R:94 [ASN] 0:499 [G] R:53 [SER] A:492 [G] ✔
R:94 [ASN] 0:500 [G] R:53 [SER] A:493 [G] ✔
R:26 [LYS] 0:1370 [G] R:15 [GLN] A:1261 [G] ✔
R:133 [ALA] 0:1689 [A] R:93 [ALA] A:1612 [A] ✔
R:22 [GLN] 0:1428 [C] R:11 [ALA] A:1317 [A] ✔
R:22 [GLN] 0:2052 [U] R:11 [ALA] A:2007 [U] ✔
R:93 [GLU] 0:493 [U] R:52 [GLU] A:486 [C] ✔
R:33 [ARG] 0:525 [G] R:22 [ASP] A:518 [C] ✔
R:129 [ALA] 0:840 [U] R:89 [ALA] A:745 [U] ✔
R:129 [ALA] 0:841 [A] R:89 [ALA] A:746 [G] ✔
R:129 [ALA] 0:843 [A] R:89 [ALA] A:748 [A] ✔
R:129 [ALA] 0:844 [A] R:89 [ALA] A:749 [A] ✔
R:135 [ALA] 0:2054 [A] R:95 [ARG] A:2009 [A] ✔
R:135 [ALA] 0:2055 [A] R:95 [ARG] A:2010 [A] ✔
R:17 [MET] 0:499 [G] R:6 [LYS] A:492 [G] ✔
R:17 [MET] 0:500 [G] R:6 [LYS] A:493 [G] ✔
R:17 [MET] 0:501 [G] R:6 [LYS] A:494 [G] ✔
R:15 [LYS] 0:500 [G] R:4 [THR] A:493 [G] ✔
R:15 [LYS] 0:501 [G] R:4 [THR] A:494 [G] ✔
R:139 [PRO] 0:1370 [G] R:99 [ARG] A:1261 [G] ✔
R:139 [PRO] 0:2053 [G] R:99 [ARG] A:2008 [G] ✔
R:114 [VAL] 0:525 [G] R:74 [ILE] A:518 [C] ✔
R:23 [MET] 0:2052 [U] R:12 [ILE] A:2007 [U] ✔
R:127 [PRO] 0:1689 [A] R:87 [PRO] A:1612 [A] ✔
R:127 [PRO] 0:1690 [C] R:87 [PRO] A:1613 [C] ✔
R:115 [ALA] 0:524 [A] R:75 [TYR] A:517 [G] ✔
R:115 [ALA] 0:525 [G] R:75 [TYR] A:518 [C] ✔
R:118 [LYS] 0:21 [G] R:78 [GLU] A:31 [G] ✔
R:118 [LYS] 0:22 [U] R:78 [GLU] A:32 [U] ✔
R:118 [LYS] 0:1366 [C] R:78 [GLU] A:1257 [G] ✔
R:113 [HIS] 0:525 [G] R:73 [THR] A:518 [C] ✔
R:84 [ALA] 0:2051 [G] R:43 [ALA] A:2006 [G] ✔
R:24 [SER] 0:1370 [G] R:13 [SER] A:1261 [G] ✔
R:122 [GLN] 0:1428 [C] R:82 [LEU] A:1317 [A] ✔
R:82 [GLU] 0:2050 [G] R:41 [LYS] A:2005 [A] ✔
R:82 [GLU] 0:2051 [G] R:41 [LYS] A:2006 [G] ✔
R:18 [LEU] 0:499 [G] R:7 [LEU] A:492 [G] ✔
R:138 [SER] 0:2052 [U] R:98 [LYS] A:2007 [U] ✔
R:138 [SER] 0:2053 [G] R:98 [LYS] A:2008 [G] ✔
R:134 [SER] 0:2054 [A] R:94 [ASP] A:2009 [A] ✔
R:134 [SER] 0:2055 [A] R:94 [ASP] A:2010 [A] ✔
R:101 [HIS] 0:491 [C] R:60 [HIS] A:484 [C] ✔
R:101 [HIS] 0:492 [C] R:60 [HIS] A:485 [C] ✔
R:101 [HIS] 0:501 [G] R:60 [HIS] A:494 [G] ✔
R:83 [LYS] 0:2050 [G] R:42 [LYS] A:2005 [A] ✔
R:83 [LYS] 0:2051 [G] R:42 [LYS] A:2006 [G] ✔
R:83 [LYS] 0:2052 [U] R:42 [LYS] A:2007 [U] ✔
R:120 [GLY] 0:22 [U] R:80 [MET] A:32 [U] ✔
R:29 [LYS] 0:523 [C] R:18 [ARG] A:516 [C] ✔
R:29 [LYS] 0:524 [A] R:18 [ARG] A:517 [G] ✔
R:16 [ALA] 0:500 [G] R:5 [ALA] A:493 [G] ✔
R:119 [VAL] 0:21 [G] R:79 [GLY] A:31 [G] ✔
R:119 [VAL] 0:22 [U] R:79 [GLY] A:32 [U] ✔
R:132 [ARG] 0:2055 [A] R:92 [ARG] A:2010 [A] ❌ 7RYG_R_A
R:132 [ARG] 0:2056 [C] R:92 [ARG] A:2011 [A] ❌ 7RYG_R_A
R:136 [TRP] 0:1372 [A] R:96 [ILE] A:1263 [A] ❌ 7RYG_R_A
R:136 [TRP] 0:1431 [C] R:96 [ILE] A:1320 [U] ❌ 7RYG_R_A
R:136 [TRP] 0:2052 [U] R:96 [ILE] A:2007 [U] ❌ 7RYG_R_A
R:128 [ARG] 0:2055 [A] R:88 [ARG] A:2010 [A] ❌ 7RYG_R_A
R:27 [HIS] 0:2051 [G] R:16 [LYS] A:2006 [G] ❌ 7RYG_R_A
R:94 [ASN] 0:501 [G] R:53 [SER] A:494 [G] ❌ 7RYG_R_A
R:93 [GLU] 0:494 [C] R:52 [GLU] A:487 [U] ❌ 7RYG_R_A
R:135 [ALA] 0:2053 [G] R:95 [ARG] A:2008 [G] ❌ 7RYG_R_A
R:15 [LYS] 0:502 [A] R:4 [THR] A:495 [G] ❌ 7RYG_R_A
R:23 [MET] 0:1370 [G] R:12 [ILE] A:1261 [G] ❌ 7RYG_R_A
R:127 [PRO] 0:841 [A] R:87 [PRO] A:746 [G] ❌ 7RYG_R_A
R:24 [SER] 0:2052 [U] R:13 [SER] A:2007 [U] ❌ 7RYG_R_A
R:122 [GLN] 0:1429 [U] R:82 [LEU] A:1318 [C] ❌ 7RYG_R_A
R:29 [LYS] 0:525 [G] R:18 [ARG] A:518 [C] ❌ 7RYG_R_A
R:16 [ALA] 0:501 [G] R:5 [ALA] A:494 [G] ❌ 7RYG_R_A
R:123 [GLN] 0:1429 [U] R:83 [LYS] A:1318 [C] ❌ 7RYG_R_A
R:27 [HIS] 0:2052 [U] R:16 [LYS] A:2007 [U] ❌ 1VQ8_R_0
R:27 [HIS] 0:2053 [G] R:16 [LYS] A:2008 [G] ❌ 1VQ8_R_0
R:115 [ALA] 0:20 [G] R:75 [TYR] A:30 [G] ❌ 1VQ8_R_0
R:118 [LYS] 0:523 [C] R:78 [GLU] A:516 [C] ❌ 1VQ8_R_0
R:19 [ARG] 0:22 [U] R:8 [ARG] A:32 [U] ❌ 1VQ8_R_0
R:19 [ARG] 0:21 [G] R:8 [ARG] A:31 [G] ❌ 1VQ8_R_0
R:126 [LYS] 0:2054 [A] R:86 [MET] A:2009 [A] ❌ 1VQ8_R_0
R:134 [SER] 0:2056 [C] R:94 [ASP] A:2011 [A] ❌ 1VQ8_R_0
R:138 [SER] 0:1429 [U] R:98 [LYS] A:1318 [C] ❌ 1VQ8_R_0
R:139 [PRO] 0:1366 [C] R:99 [ARG] A:1257 [G] ❌ 1VQ8_R_0
R:136 [TRP] 0:1373 [G] R:96 [ILE] A:1264 [A] ❌ 7RYG_A:1264 no longer at interface
R:26 [LYS] 0:1368 [U] R:15 [GLN] A:1259 [G] ❌ 7RYG_A:1259 no longer at interface
R:26 [LYS] 0:1369 [A] R:15 [GLN] A:1260 [A] ❌ 7RYG_A:1260 no longer at interface
R:22 [GLN] 0:1427 [A] R:11 [ALA] A:1316 [A] ❌ 7RYG_A:1316 no longer at interface
R:33 [ARG] 0:12 [U] R:22 [ASP] A:22 [G] ❌ 7RYG_A:22 no longer at interface
R:122 [GLN] 0:1427 [A] R:82 [LEU] A:1316 [A] ❌ 7RYG_A:1316 no longer at interface
R:83 [LYS] 0:1433 [G] R:42 [LYS] A:1322 [A] ❌ 7RYG_A:1322 no longer at interface
R:125 [ARG] 0:1430 [G] R:85 [ILE] A:1319 [G] ❌ 7RYG_R:85, 7RYG_A:1319 no longer at interface
R:90 [ASP] 0:495 [A] R:49 [LYS] A:488 [G] ❌ 1VQ8_R:90, 1VQ8_0:495 no longer at interface
R:90 [ASP] 0:498 [A] R:49 [LYS] A:491 [A] ❌ 1VQ8_R:90, 1VQ8_0:498 no longer at interface
R:90 [ASP] 0:497 [A] R:49 [LYS] A:490 [G] ❌ 1VQ8_R:90, 1VQ8_0:497 no longer at interface
R:18 [LEU] 0:498 [A] R:7 [LEU] A:491 [A] ❌ 1VQ8_0:498 no longer at interface
R:118 [LYS] 0:522 [U] R:78 [GLU] A:515 [C] ❌ 1VQ8_0:522 no longer at interface
R:120 [GLY] 0:23 [G] R:80 [MET] A:33 [G] ❌ 1VQ8_0:23 no longer at interface
R:121 [GLU] 0:23 [G] R:81 [SER] A:33 [G] ❌ 1VQ8_R:121, 1VQ8_0:23 no longer at interface
R:123 [GLN] 0:1364 [G] R:83 [LYS] A:1255 [A] ❌ 1VQ8_0:1364 no longer at interface
R:123 [GLN] 0:1365 [C] R:83 [LYS] A:1256 [C] ❌ 1VQ8_0:1365 no longer at interface
R:130 [MET] 0:839 [C] R:90 [LYS] A:744 [U] ❌ 1VQ8_0:839 no longer at interface
R:102 [GLN] 0:501 [G] R:62 [ASN] A:494 [G] ❌ 7RYG_R:62 no longer at interface
R:102 [GLN] 0:502 [A] R:62 [ASN] A:495 [G] ❌ 7RYG_R:62 no longer at interface
R:25 [PHE] 0:523 [C] R:14 [ALA] A:516 [C] ❌ 7RYG_R:14 no longer at interface
R:25 [PHE] 0:524 [A] R:14 [ALA] A:517 [G] ❌ 7RYG_R:14 no longer at interface
R:25 [PHE] 0:1370 [G] R:14 [ALA] A:1261 [G] ❌ 7RYG_R:14 no longer at interface
R:142 [ASP] 0:22 [U] R:102 [HIS] A:32 [U] ❌ 1VQ8_R:142 no longer at interface
R:142 [ASP] 0:21 [G] R:102 [HIS] A:31 [G] ❌ 1VQ8_R:142 no longer at interface
R:51 [ILE] 0:2050 [G] R:40 [ASN] A:2005 [A] ❌ 1VQ8_R:51 no longer at interface
R:51 [ILE] 0:2049 [C] R:40 [ASN] A:2004 [C] ❌ 1VQ8_R:51 no longer at interface
R:51 [ILE] 0:2051 [G] R:40 [ASN] A:2006 [G] ❌ 1VQ8_R:51 no longer at interface
R:90 [ASP] 0:494 [C] R:49 [LYS] A:487 [U] ❌ 1VQ8_R:90 no longer at interface
R:90 [ASP] 0:493 [U] R:49 [LYS] A:486 [C] ❌ 1VQ8_R:90 no longer at interface
R:97 [GLY] 0:492 [C] R:56 [ALA] A:485 [C] ❌ 1VQ8_R:97 no longer at interface
R:97 [GLY] 0:493 [U] R:56 [ALA] A:486 [C] ❌ 1VQ8_R:97 no longer at interface
R:124 [GLY] 0:1429 [U] R:84 [ARG] A:1318 [C] ❌ 1VQ8_R:124 no longer at interface
R:124 [GLY] 0:1428 [C] R:84 [ARG] A:1317 [A] ❌ 1VQ8_R:124 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L22 0.92 1.5 0.29 0.89 0.92 0.86 0.82 0.74 0.62 0.29 0.55


Other pairs involving 1VQ8_R_0 or 7RYG_R_A

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_Q_A 7RYG_R_A 0.74 0.98 1.7 0.55 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
1VQ8_R_0 7ASM_Q_A 0.76 0.9 1.52 0.28 Ribosomal protein L22 compare
1VQ8_R_0 6AZ3_T_1,2 0.76 0.8 1.5 0.28 Ribosomal protein L22 compare
1VQ8_R_0 6S0Z_Q_A 0.64 0.92 1.69 0.22 Ribosomal protein L22 compare
1VQ8_R_0 7O7Y_BP_B5,B8 0.80 0.94 1.51 0.35 Ribosomal protein L22 compare
1VQ8_R_0 6AZ3_T_5 0.69 0.88 1.88 0.07 Ribosomal protein L22 compare
1VQ8_R_0 4Y4O_1W_1A 0.70 0.92 1.91 0.22 Ribosomal protein L22 compare
1VQ8_R_0 7O9M_T_A 0.65 0.91 2.65 0.09 Ribosomal protein L22 compare
1VQ8_R_0 7RYG_R_A 0.74 0.92 1.5 0.29 Ribosomal protein L22 compare
1VQ8_R_0 1YHQ_R_0 0.99 1.0 0.18 0.98 Ribosomal protein L22 Archaeal large subunit ribosomal RNA compare
1VQ8_R_0 7K00_r_a 0.72 0.91 2.03 0.26 Ribosomal protein L22 compare
1VQ8_R_0 7OF0_T_A 0.67 0.93 2.73 0.09 Ribosomal protein L22 compare
7OF0_T_A 7RYG_R_A 0.80 0.9 1.73 0.24 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
1YHQ_R_0 7RYG_R_A 0.74 0.92 1.41 0.29 Ribosomal protein L22 compare
4Y4O_1W_1A 7RYG_R_A 0.84 0.96 1.0 0.69 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
6AZ3_T_1,2 7RYG_R_A 0.67 0.76 1.76 0.24 Ribosomal protein L22 compare
7ASM_Q_A 7RYG_R_A 0.92 0.98 0.88 0.61 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare