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All interfaces > All interologs > Interface groups > group134 > 1YHQ_R_0

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Protein

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Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_R
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
R:1 [GLY] 0:21 [G] 3.4 0:522 [U] 0.0
R:1 [GLY] 0:22 [U] 2.98 0:521 [A] 0.0
R:2 [ILE] 0:20 [G] 3.44 0:523 [C] 0.0
R:2 [ILE] 0:21 [G] 3.5 0:522 [U] 0.0
R:3 [SER] 0:20 [G] 2.83 0:523 [C] sugar:BB, sugar:BB 0.0
R:3 [SER] 0:21 [G] 2.95 0:522 [U] 0.0
R:3 [SER] 0:510 [U] 3.35 0.0
R:4 [TYR] 0:19 [U] 4.43 0:524 [A] 0.0
R:4 [TYR] 0:20 [G] 4.06 0:523 [C] 0.0
R:4 [TYR] 0:500 [G] 3.85 0:492 [C] 0.0
R:4 [TYR] 0:501 [G] 2.83 0:491 [C] 0.0
R:4 [TYR] 0:510 [U] 4.33 0.0
R:5 [SER] 0:19 [U] 2.67 0:524 [A] sugar:BB 0.0
R:5 [SER] 0:20 [G] 3.13 0:523 [C] 0.0
R:6 [VAL] 0:19 [U] 4.4 0:524 [A] 0.0
R:15 [LYS] 0:500 [G] 4.43 0:492 [C] 0.0
R:15 [LYS] 0:501 [G] 3.54 0:491 [C] 0.0
R:15 [LYS] 0:502 [A] 4.19 0:490 [C] 0.0
R:16 [ALA] 0:500 [G] 3.46 0:492 [C] 0.0
R:16 [ALA] 0:501 [G] 4.29 0:491 [C] 0.0
R:17 [MET] 0:499 [G] 4.43 0:493 [U] 0.0
R:17 [MET] 0:500 [G] 3.34 0:492 [C] sugar:BB 0.0
R:17 [MET] 0:501 [G] 3.37 0:491 [C] 0.0
R:18 [LEU] 0:499 [G] 4.64 0:493 [U] 0.0
R:19 [ARG] 0:499 [G] 3.37 0:493 [U] 0.0
R:19 [ARG] 0:500 [G] 3.04 0:492 [C] 0.0
R:22 [GLN] 0:1427 [A] 4.35 0.0
R:22 [GLN] 0:1428 [C] 3.38 0:1426 [C] 0.0
R:22 [GLN] 0:2052 [U] 4.37 0:1373 [G] 0.0
R:23 [MET] 0:1370 [G] 4.89 0:1371 [U] 0.0
R:23 [MET] 0:2052 [U] 4.53 0:1373 [G] 0.0
R:24 [SER] 0:1370 [G] 2.8 0:1371 [U] base:SC 0.0
R:24 [SER] 0:2052 [U] 4.99 0:1373 [G] 0.0
R:25 [PHE] 0:523 [C] 3.4 0:20 [G] 0.0
R:25 [PHE] 0:524 [A] 3.69 0:19 [U] 0.0
R:25 [PHE] 0:1370 [G] 4.39 0:1371 [U] 0.0
R:26 [LYS] 0:1368 [U] 4.18 0:2056 [C] 0.0
R:26 [LYS] 0:1369 [A] 2.65 sugar:SC 0.0
R:26 [LYS] 0:1370 [G] 2.67 0:1371 [U] 0.0
R:27 [HIS] 0:1370 [G] 3.75 0:1371 [U] 0.0
R:27 [HIS] 0:2051 [G] 3.69 0:1374 [C] 0.0
R:29 [LYS] 0:523 [C] 3.73 0:20 [G] 0.0
R:29 [LYS] 0:524 [A] 3.02 0:19 [U] 0.0
R:29 [LYS] 0:525 [G] 4.67 0:18 [C] 0.0
R:33 [ARG] 0:12 [U] 4.78 0:531 [G] 0.0
R:33 [ARG] 0:525 [G] 3.36 0:18 [C] 0.0
R:36 [LYS] 0:525 [G] 3.63 0:18 [C] 0.0
R:36 [LYS] 0:526 [U] 2.7 0:17 [G] 0.0
R:60 [LYS] 0:11 [A] 2.65 sugar:SC 0.0
R:60 [LYS] 0:12 [U] 3.4 0:531 [G] 0.0
R:60 [LYS] 0:13 [G] 4.73 0:530 [C] 0.0
R:61 [GLN] 0:12 [U] 4.73 0:531 [G] 0.0
R:61 [GLN] 0:13 [G] 3.64 0:530 [C] 0.0
R:61 [GLN] 0:524 [A] 3.63 0:19 [U] 0.0
R:61 [GLN] 0:1370 [G] 4.39 0:1371 [U] 0.0
R:62 [HIS] 0:524 [A] 4.99 0:19 [U] 0.0
R:62 [HIS] 0:1367 [A] 4.87 0:2057 [U] 0.0
R:62 [HIS] 0:1370 [G] 3.05 0:1371 [U] 0.0
R:63 [ASN] 0:1370 [G] 3.44 0:1371 [U] 0.0
R:63 [ASN] 0:2087 [C] 4.05 0:2657 [G] 0.0
R:63 [ASN] 0:2088 [C] 3.82 0:2656 [G] 0.0
R:64 [SER] 0:1369 [A] 2.86 0.0
R:64 [SER] 0:1370 [G] 2.51 0:1371 [U] 0.0
R:64 [SER] 0:1371 [U] 4.01 0:1370 [G] 0.0
R:64 [SER] 0:2087 [C] 4.79 0:2657 [G] 0.0
R:64 [SER] 0:2088 [C] 3.35 0:2656 [G] 0.0
R:65 [GLY] 0:2048 [C] 3.3 0:1727 [G] 0.0
R:65 [GLY] 0:2087 [C] 4.56 0:2657 [G] 0.0
R:65 [GLY] 0:2088 [C] 2.58 0:2656 [G] 0.0
R:65 [GLY] 0:2089 [A] 3.68 0:2655 [U] 0.0
R:66 [VAL] 0:1370 [G] 4.98 0:1371 [U] 0.0
R:66 [VAL] 0:2048 [C] 4.99 0:1727 [G] 0.0
R:66 [VAL] 0:2049 [C] 4.08 0:1726 [G] 0.0
R:66 [VAL] 0:2087 [C] 4.33 0:2657 [G] 0.0
R:66 [VAL] 0:2088 [C] 3.53 0:2656 [G] 0.0
R:67 [GLY] 0:2048 [C] 4.43 0:1727 [G] 0.0
R:67 [GLY] 0:2049 [C] 4.03 0:1726 [G] 0.0
R:67 [GLY] 0:2841 [A] 3.55 0.0
R:68 [HIS] 0:2087 [C] 3.02 0:2657 [G] base:SC, sugar:SC 0.0
R:68 [HIS] 0:2088 [C] 3.97 0:2656 [G] 0.0
R:68 [HIS] 0:2657 [G] 3.58 0:2087 [C] 0.0
R:68 [HIS] 0:2658 [G] 2.59 0:2086 [C] sugar:SC 0.0
R:68 [HIS] 0:2659 [U] 4.35 0:2085 [A] 0.0
R:68 [HIS] 0:2841 [A] 2.82 base:BB, sugar:BB 0.0
R:68 [HIS] 0:2842 [G] 3.31 0.0
R:69 [LYS] 0:2048 [C] 3.5 0:1727 [G] 0.0
R:69 [LYS] 0:2049 [C] 2.82 0:1726 [G] 0.0
R:69 [LYS] 0:2841 [A] 4.1 0.0
R:69 [LYS] 0:2842 [G] 4.39 0.0
R:70 [SER] 0:2831 [C] 4.01 0:2909 [G] 0.0
R:70 [SER] 0:2842 [G] 3.66 0.0
R:70 [SER] 0:2843 [A] 3.24 0:2838 [A] 0.0
R:71 [LYS] 0:2831 [C] 3.0 0:2909 [G] 0.0
R:71 [LYS] 0:2832 [C] 2.93 0:2848 [G] 0.0
R:72 [VAL] 0:2659 [U] 4.78 0:2085 [A] 0.0
R:72 [VAL] 0:2660 [G] 3.81 0:2084 [C] 0.0
R:73 [ASP] 0:2660 [G] 3.81 0:2084 [C] 0.0
R:74 [GLY] 0:11 [A] 4.02 0.0
R:74 [GLY] 0:2659 [U] 4.18 0:2085 [A] 0.0
R:74 [GLY] 0:2660 [G] 2.85 0:2084 [C] 0.0
R:75 [TRP] 0:11 [A] 3.63 0.0
R:75 [TRP] 0:12 [U] 3.59 0:531 [G] 0.0
R:75 [TRP] 0:2086 [C] 3.53 0:2658 [G] 0.0
R:75 [TRP] 0:2659 [U] 2.92 0:2085 [A] 0.0
R:75 [TRP] 0:2660 [G] 3.83 0:2084 [C] 0.0
R:76 [ASP] 0:2086 [C] 4.13 0:2658 [G] 0.0
R:76 [ASP] 0:2087 [C] 3.71 0:2657 [G] 0.0
R:76 [ASP] 0:2658 [G] 2.94 0:2086 [C] base:SC 0.0
R:76 [ASP] 0:2659 [U] 3.18 0:2085 [A] 0.0
R:77 [ALA] 0:2087 [C] 4.98 0:2657 [G] 0.0
R:78 [GLY] 0:2049 [C] 3.86 0:1726 [G] 0.0
R:79 [ARG] 0:1370 [G] 3.6 0:1371 [U] sugar:SC 0.0
R:79 [ARG] 0:1371 [U] 3.09 0:1370 [G] 0.0
R:79 [ARG] 0:2049 [C] 3.15 0:1726 [G] 0.0
R:79 [ARG] 0:2050 [G] 3.36 0:1725 [C] 0.0
R:80 [TYR] 0:2049 [C] 3.48 0:1726 [G] 0.0
R:80 [TYR] 0:2050 [G] 2.73 0:1725 [C] 0.0
R:80 [TYR] 0:2051 [G] 4.84 0:1374 [C] 0.0
R:81 [PRO] 0:2050 [G] 3.66 0:1725 [C] 0.0
R:81 [PRO] 0:2051 [G] 3.68 0:1374 [C] 0.0
R:82 [GLU] 0:2050 [G] 3.14 0:1725 [C] 0.0
R:82 [GLU] 0:2051 [G] 3.33 0:1374 [C] 0.0
R:83 [LYS] 0:1433 [G] 4.44 0.0
R:83 [LYS] 0:2050 [G] 4.49 0:1725 [C] 0.0
R:83 [LYS] 0:2051 [G] 3.1 0:1374 [C] 0.0
R:83 [LYS] 0:2052 [U] 2.56 0:1373 [G] 0.0
R:84 [ALA] 0:2051 [G] 4.52 0:1374 [C] 0.0
R:93 [GLU] 0:493 [U] 4.59 0:499 [G] 0.0
R:93 [GLU] 0:494 [C] 3.72 0:498 [A] 0.0
R:94 [ASN] 0:493 [U] 4.03 0:499 [G] 0.0
R:94 [ASN] 0:499 [G] 3.36 0:493 [U] 0.0
R:94 [ASN] 0:500 [G] 2.7 0:492 [C] base:SC, sugar:SC 0.0
R:94 [ASN] 0:501 [G] 4.35 0:491 [C] 0.0
R:98 [ASN] 0:492 [C] 4.59 0:500 [G] 0.0
R:98 [ASN] 0:500 [G] 3.0 0:492 [C] base:SC 0.0
R:98 [ASN] 0:501 [G] 2.76 0:491 [C] 0.0
R:101 [HIS] 0:491 [C] 4.58 0:501 [G] 0.0
R:101 [HIS] 0:492 [C] 3.42 0:500 [G] 0.0
R:101 [HIS] 0:501 [G] 4.38 0:491 [C] 0.0
R:102 [GLN] 0:501 [G] 3.42 0:491 [C] 0.0
R:102 [GLN] 0:502 [A] 4.89 0:490 [C] 0.0
R:113 [HIS] 0:525 [G] 3.62 0:18 [C] 0.0
R:114 [VAL] 0:525 [G] 4.69 0:18 [C] 0.0
R:115 [ALA] 0:524 [A] 3.37 0:19 [U] 0.0
R:115 [ALA] 0:525 [G] 3.74 0:18 [C] 0.0
R:116 [ALA] 0:524 [A] 2.76 0:19 [U] sugar:BB 0.0
R:117 [HIS] 0:20 [G] 3.26 0:523 [C] 0.0
R:117 [HIS] 0:21 [G] 4.19 0:522 [U] 0.0
R:117 [HIS] 0:524 [A] 3.49 0:19 [U] base:SC 0.0
R:118 [LYS] 0:21 [G] 3.88 0:522 [U] 0.0
R:118 [LYS] 0:22 [U] 4.12 0:521 [A] 0.0
R:118 [LYS] 0:1366 [C] 4.42 0:2058 [G] 0.0
R:119 [VAL] 0:21 [G] 3.98 0:522 [U] 0.0
R:119 [VAL] 0:22 [U] 3.33 0:521 [A] 0.0
R:119 [VAL] 0:23 [G] 4.9 0:520 [A] 0.0
R:120 [GLY] 0:22 [U] 4.89 0:521 [A] 0.0
R:121 [GLU] 0:2054 [A] 5.0 0:2648 [U] 0.0
R:122 [GLN] 0:1427 [A] 4.28 0.0
R:122 [GLN] 0:1428 [C] 2.88 0:1426 [C] 0.0
R:122 [GLN] 0:1429 [U] 3.87 0:1437 [A] 0.0
R:123 [GLN] 0:1429 [U] 4.54 0:1437 [A] 0.0
R:126 [LYS] 0:1373 [G] 4.79 0:2052 [U] 0.0
R:126 [LYS] 0:1431 [C] 2.81 0.0
R:127 [PRO] 0:1689 [A] 3.37 0.0
R:127 [PRO] 0:1690 [C] 3.52 0.0
R:128 [ARG] 0:840 [U] 3.2 0:2055 [A] 0.0
R:128 [ARG] 0:841 [A] 2.84 0.0
R:128 [ARG] 0:843 [A] 3.76 0:838 [C] 0.0
R:128 [ARG] 0:844 [A] 4.61 0.0
R:128 [ARG] 0:1372 [A] 4.45 0:2053 [G] 0.0
R:128 [ARG] 0:1689 [A] 2.82 base:BB 0.0
R:128 [ARG] 0:1690 [C] 4.29 0.0
R:128 [ARG] 0:2054 [A] 2.3 0:2648 [U] base:SC 0.0
R:128 [ARG] 0:2055 [A] 3.4 0:840 [U] sugar:SC 0.0
R:128 [ARG] 0:2648 [U] 3.57 0:2054 [A] base:SC 0.0
R:129 [ALA] 0:840 [U] 3.53 0:2055 [A] 0.0
R:129 [ALA] 0:841 [A] 3.13 0.0
R:129 [ALA] 0:843 [A] 3.56 0:838 [C] 0.0
R:129 [ALA] 0:844 [A] 3.68 0.0
R:130 [MET] 0:841 [A] 3.74 0.0
R:130 [MET] 0:844 [A] 2.84 0.0
R:131 [GLY] 0:844 [A] 3.65 0.0
R:131 [GLY] 0:1689 [A] 3.48 0.0
R:132 [ARG] 0:840 [U] 3.37 0:2055 [A] 0.0
R:132 [ARG] 0:1689 [A] 3.04 0.0
R:132 [ARG] 0:2055 [A] 2.75 0:840 [U] sugar:SC 0.0
R:132 [ARG] 0:2056 [C] 4.39 0:1368 [U] 0.0
R:133 [ALA] 0:1689 [A] 3.65 0.0
R:134 [SER] 0:2054 [A] 2.66 0:2648 [U] sugar:SC 0.0
R:134 [SER] 0:2055 [A] 3.82 0:840 [U] 0.0
R:135 [ALA] 0:2053 [G] 4.58 0:1372 [A] 0.0
R:135 [ALA] 0:2054 [A] 2.66 0:2648 [U] sugar:BB 0.0
R:135 [ALA] 0:2055 [A] 3.84 0:840 [U] 0.0
R:136 [TRP] 0:1372 [A] 3.51 0:2053 [G] 0.0
R:136 [TRP] 0:1373 [G] 3.4 0:2052 [U] 0.0
R:136 [TRP] 0:1431 [C] 4.45 0.0
R:136 [TRP] 0:2052 [U] 3.94 0:1373 [G] sugar:SC 0.0
R:136 [TRP] 0:2053 [G] 3.36 0:1372 [A] 0.0
R:136 [TRP] 0:2054 [A] 3.88 0:2648 [U] 0.0
R:137 [ASN] 0:2053 [G] 3.16 0:1372 [A] 0.0
R:137 [ASN] 0:2054 [A] 2.94 0:2648 [U] 0.0
R:138 [SER] 0:2052 [U] 4.77 0:1373 [G] 0.0
R:138 [SER] 0:2053 [G] 2.46 0:1372 [A] 0.0
R:139 [PRO] 0:1370 [G] 3.51 0:1371 [U] 0.0
R:139 [PRO] 0:2053 [G] 4.38 0:1372 [A] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group134 1YHQ_R_0 R: 50s ribosomal protein l22p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P10970 Ribosomal protein L22 Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_R_0 1YHQ_R_0 0.99 1.0 0.18 0.98 Ribosomal protein L22 Archaeal large subunit ribosomal RNA compare
1YHQ_R_0 4Y4O_1W_1A 0.70 0.92 1.84 0.22 Ribosomal protein L22 compare
1YHQ_R_0 6AZ3_T_1,2 0.75 0.8 1.43 0.27 Ribosomal protein L22 compare
1YHQ_R_0 6AZ3_T_5 0.66 0.88 2.04 0.07 Ribosomal protein L22 compare
1YHQ_R_0 6S0Z_Q_A 0.64 0.92 1.66 0.22 Ribosomal protein L22 compare
1YHQ_R_0 7ASM_Q_A 0.76 0.9 1.49 0.28 Ribosomal protein L22 compare
1YHQ_R_0 7K00_r_a 0.71 0.91 1.91 0.26 Ribosomal protein L22 compare
1YHQ_R_0 7O7Y_BP_B5,B8 0.78 0.94 1.47 0.33 Ribosomal protein L22 compare
1YHQ_R_0 7O9M_T_A 0.64 0.91 2.58 0.09 Ribosomal protein L22 compare
1YHQ_R_0 7OF0_T_A 0.65 0.93 2.63 0.09 Ribosomal protein L22 compare
1YHQ_R_0 7RYG_R_A 0.74 0.92 1.41 0.29 Ribosomal protein L22 compare