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All interfaces > All interologs > Interface groups > group134 > 4Y4O_1W_1A

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1W
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1W:4 [LYS] 1A:519 [G] 4.24 1A:512 [C] 0.0
1W:4 [LYS] 1A:520 [G] 3.34 1A:511 [C] 0.0
1W:5 [ALA] 1A:519 [G] 3.36 1A:512 [C] 0.0
1W:5 [ALA] 1A:520 [G] 4.76 1A:511 [C] 0.0
1W:6 [ILE] 1A:518 [G] 2.69 1A:513 [C] sugar:BB 0.0
1W:6 [ILE] 1A:519 [G] 3.07 1A:512 [C] sugar:BB, sugar:BB 0.0
1W:6 [ILE] 1A:520 [G] 4.55 1A:511 [C] 0.0
1W:7 [ALA] 1A:517 [A] 4.2 1A:514 [G] 0.94
1W:7 [ALA] 1A:518 [G] 3.31 1A:513 [C] 0.94
1W:8 [ARG] 1A:25 [U] 4.24 1A:540 [A] 74.11
1W:8 [ARG] 1A:517 [A] 4.8 1A:514 [G] 74.11
1W:8 [ARG] 1A:518 [G] 2.85 1A:513 [C] sugar:BB 74.11
1W:8 [ARG] 1A:519 [G] 2.97 1A:512 [C] 74.11
1W:8 [ARG] 1A:532 [A] 4.57 74.11
1W:8 [ARG] 1A:533 [G] 4.73 74.11
1W:9 [TYR] 1A:25 [U] 4.54 1A:540 [A] 48.06
1W:9 [TYR] 1A:518 [G] 4.53 1A:513 [C] 48.06
1W:9 [TYR] 1A:533 [G] 3.3 sugar:SC base/AA stacks 48.06
1W:11 [ARG] 1A:1368 [A] 3.44 82.34
1W:11 [ARG] 1A:2033 [U] 3.81 1A:1315 [A] 82.34
1W:11 [ARG] 1A:2034 [G] 2.64 1A:1314 [A] 82.34
1W:12 [ILE] 1A:2033 [U] 3.94 1A:1315 [A] 67.45
1W:13 [SER] 1A:1312 [G] 2.33 1A:1313 [U] base:SC 93.81
1W:13 [SER] 1A:2034 [G] 4.33 1A:1314 [A] 93.81
1W:15 [ARG] 1A:1311 [A] 3.45 64.83
1W:15 [ARG] 1A:1312 [G] 2.28 1A:1313 [U] sugar:SC base/AA stacks 64.83
1W:16 [LYS] 1A:1312 [G] 3.8 1A:1313 [U] 99.0
1W:16 [LYS] 1A:2033 [U] 2.82 1A:1315 [A] 99.0
1W:16 [LYS] 1A:2034 [G] 2.72 1A:1314 [A] base:SC 99.0
1W:18 [ARG] 1A:542 [C] 3.19 1A:23 [G] sugar:SC 82.48
1W:18 [ARG] 1A:543 [G] 3.47 1A:22 [C] 82.48
1W:18 [ARG] 1A:544 [U] 4.92 1A:21 [A] 82.48
1W:22 [ASP] 1A:544 [U] 4.48 1A:21 [A] 58.55
1W:25 [ARG] 1A:544 [U] 3.45 1A:21 [A] 0.0
1W:25 [ARG] 1A:545 [G] 3.31 1A:20 [C] 0.0
1W:40 [ASN] 1A:2030 [C] 3.92 1A:1696 [G] sugar:SC 50.38
1W:40 [ASN] 1A:2031 [G] 3.17 1A:1695 [C] 50.38
1W:40 [ASN] 1A:2032 [G] 4.82 1A:1316 [C] 50.38
1W:41 [LYS] 1A:2031 [G] 2.71 1A:1695 [C] 60.95
1W:41 [LYS] 1A:2032 [G] 3.63 1A:1316 [C] 60.95
1W:42 [ARG] 1A:1373 [C] 4.99 62.89
1W:42 [ARG] 1A:2031 [G] 4.1 1A:1695 [C] 62.89
1W:42 [ARG] 1A:2032 [G] 3.02 1A:1316 [C] 62.89
1W:42 [ARG] 1A:2033 [U] 2.83 1A:1315 [A] 62.89
1W:43 [GLY] 1A:2032 [G] 4.68 1A:1316 [C] 70.55
1W:45 [TYR] 1A:515 [G] 2.68 base:SC, base:SC 8.4
1W:45 [TYR] 1A:516 [G] 4.73 8.4
1W:45 [TYR] 1A:1330 [A] 3.64 8.4
1W:49 [LYS] 1A:513 [C] 4.71 1A:518 [G] 79.49
1W:49 [LYS] 1A:514 [G] 2.61 1A:517 [A] sugar:SC 79.49
1W:49 [LYS] 1A:515 [G] 2.58 base:SC 79.49
1W:49 [LYS] 1A:516 [G] 3.53 79.49
1W:52 [GLU] 1A:513 [C] 3.83 1A:518 [G] 0.0
1W:53 [SER] 1A:513 [C] 2.96 1A:518 [G] base:SC 0.0
1W:53 [SER] 1A:518 [G] 3.17 1A:513 [C] base:SC 0.0
1W:53 [SER] 1A:519 [G] 4.37 1A:512 [C] 0.0
1W:56 [ALA] 1A:512 [C] 4.24 1A:519 [G] 0.0
1W:56 [ALA] 1A:513 [C] 3.11 1A:518 [G] 0.0
1W:57 [ASN] 1A:512 [C] 4.22 1A:519 [G] 0.0
1W:57 [ASN] 1A:519 [G] 3.24 1A:512 [C] base:SC 0.0
1W:57 [ASN] 1A:520 [G] 2.81 1A:511 [C] 0.0
1W:60 [ASN] 1A:511 [C] 4.83 1A:520 [G] 0.0
1W:60 [ASN] 1A:512 [C] 3.42 1A:519 [G] 0.0
1W:60 [ASN] 1A:520 [G] 4.73 1A:511 [C] 0.0
1W:61 [ASN] 1A:512 [C] 4.39 1A:519 [G] 0.0
1W:61 [ASN] 1A:520 [G] 2.99 1A:511 [C] base:SC, base:SC, sugar:SC 0.0
1W:61 [ASN] 1A:521 [G] 3.91 1A:510 [C] 0.0
1W:62 [HIS] 1A:520 [G] 2.88 1A:511 [C] sugar:SC 0.0
1W:62 [HIS] 1A:521 [G] 3.32 1A:510 [C] 0.0
1W:73 [ALA] 1A:544 [U] 4.66 1A:21 [A] 0.0
1W:74 [ALA] 1A:544 [U] 4.01 1A:21 [A] 0.0
1W:75 [TYR] 1A:23 [G] 4.89 1A:542 [C] 0.0
1W:75 [TYR] 1A:543 [G] 3.72 1A:22 [C] 0.0
1W:75 [TYR] 1A:544 [U] 3.59 1A:21 [A] 0.0
1W:76 [VAL] 1A:543 [G] 3.64 1A:22 [C] 83.73
1W:77 [ASP] 1A:23 [G] 3.07 1A:542 [C] base:SC 72.73
1W:77 [ASP] 1A:24 [G] 3.18 1A:541 [C] 72.73
1W:77 [ASP] 1A:542 [C] 4.63 1A:23 [G] 72.73
1W:77 [ASP] 1A:543 [G] 4.23 1A:22 [C] 72.73
1W:78 [GLU] 1A:24 [G] 2.64 1A:541 [C] sugar:BB 35.02
1W:78 [GLU] 1A:25 [U] 3.16 1A:540 [A] 35.02
1W:78 [GLU] 1A:542 [C] 4.44 1A:23 [G] 35.02
1W:78 [GLU] 1A:1308 [A] 3.71 1A:2039 [U] 35.02
1W:79 [GLY] 1A:24 [G] 4.66 1A:541 [C] 87.87
1W:79 [GLY] 1A:25 [U] 3.87 1A:540 [A] 87.87
1W:80 [PRO] 1A:25 [U] 3.92 1A:540 [A] 66.59
1W:80 [PRO] 1A:26 [G] 3.21 1A:539 [A] 66.59
1W:80 [PRO] 1A:533 [G] 3.38 66.59
1W:81 [ALA] 1A:26 [G] 4.62 1A:539 [A] 41.6
1W:82 [LEU] 1A:1368 [A] 4.33 58.43
1W:83 [LYS] 1A:1306 [G] 4.02 1A:603 [C] 88.07
1W:83 [LYS] 1A:1307 [C] 2.72 1A:602 [G] 88.07
1W:84 [ARG] 1A:1368 [A] 2.99 sugar:SC 97.81
1W:84 [ARG] 1A:1369 [U] 2.9 1A:1377 [A] 97.81
1W:85 [VAL] 1A:1660 [A] 4.04 21.18
1W:86 [LEU] 1A:1371 [G] 3.94 69.96
1W:86 [LEU] 1A:2035 [A] 3.87 1A:2625 [U] 69.96
1W:87 [PRO] 1A:1660 [A] 3.39 65.32
1W:87 [PRO] 1A:1661 [C] 3.82 65.32
1W:88 [ARG] 1A:794 [U] 3.45 1A:2036 [A] 68.3
1W:88 [ARG] 1A:795 [G] 2.74 1A:793 [A] 68.3
1W:88 [ARG] 1A:797 [A] 4.1 1A:792 [G] 68.3
1W:88 [ARG] 1A:798 [A] 4.47 68.3
1W:88 [ARG] 1A:1314 [A] 4.42 1A:2034 [G] 68.3
1W:88 [ARG] 1A:1660 [A] 3.06 base:BB 68.3
1W:88 [ARG] 1A:1661 [C] 4.29 68.3
1W:88 [ARG] 1A:2035 [A] 3.12 1A:2625 [U] base:SC 68.3
1W:88 [ARG] 1A:2036 [A] 4.35 1A:794 [U] 68.3
1W:88 [ARG] 1A:2624 [C] 4.61 68.3
1W:88 [ARG] 1A:2625 [U] 3.77 1A:2035 [A] base:SC 68.3
1W:89 [ALA] 1A:794 [U] 3.24 1A:2036 [A] 80.62
1W:89 [ALA] 1A:795 [G] 2.74 1A:793 [A] 80.62
1W:89 [ALA] 1A:797 [A] 3.96 1A:792 [G] 80.62
1W:89 [ALA] 1A:798 [A] 3.76 80.62
1W:90 [ARG] 1A:795 [G] 2.98 1A:793 [A] base:BB 81.68
1W:90 [ARG] 1A:798 [A] 2.87 81.68
1W:91 [GLY] 1A:798 [A] 3.78 97.33
1W:91 [GLY] 1A:1660 [A] 3.51 97.33
1W:92 [ARG] 1A:794 [U] 2.85 1A:2036 [A] base:SC 82.56
1W:92 [ARG] 1A:1660 [A] 2.87 82.56
1W:92 [ARG] 1A:2036 [A] 3.25 1A:794 [U] sugar:SC 82.56
1W:92 [ARG] 1A:2037 [A] 4.69 1A:1310 [G] 82.56
1W:93 [ALA] 1A:1660 [A] 3.42 79.89
1W:94 [ASP] 1A:2035 [A] 2.71 1A:2625 [U] sugar:SC 51.43
1W:94 [ASP] 1A:2036 [A] 3.5 1A:794 [U] 51.43
1W:95 [ILE] 1A:2035 [A] 3.71 1A:2625 [U] 39.32
1W:95 [ILE] 1A:2036 [A] 4.01 1A:794 [U] 39.32
1W:96 [ILE] 1A:1371 [G] 3.75 81.26
1W:96 [ILE] 1A:2034 [G] 3.79 1A:1314 [A] 81.26
1W:96 [ILE] 1A:2035 [A] 3.72 1A:2625 [U] 81.26
1W:97 [LYS] 1A:1307 [C] 3.95 1A:602 [G] 50.04
1W:97 [LYS] 1A:1308 [A] 2.91 1A:2039 [U] 50.04
1W:97 [LYS] 1A:2034 [G] 3.89 1A:1314 [A] 50.04
1W:97 [LYS] 1A:2035 [A] 2.82 1A:2625 [U] 50.04
1W:98 [LYS] 1A:1369 [U] 2.96 1A:1377 [A] 85.72
1W:98 [LYS] 1A:1370 [G] 4.08 1A:1376 [C] 85.72
1W:98 [LYS] 1A:1372 [U] 4.24 85.72
1W:98 [LYS] 1A:2033 [U] 4.72 1A:1315 [A] 85.72
1W:98 [LYS] 1A:2034 [G] 3.59 1A:1314 [A] 85.72
1W:99 [ARG] 1A:1307 [C] 4.87 1A:602 [G] 87.08
1W:99 [ARG] 1A:1308 [A] 2.87 1A:2039 [U] 87.08
1W:99 [ARG] 1A:2034 [G] 3.94 1A:1314 [A] 87.08
1W:102 [HIS] 1A:24 [G] 3.4 1A:541 [C] 94.14
1W:102 [HIS] 1A:25 [U] 3.16 1A:540 [A] 94.14

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group134 4Y4O_1W_1A 1W: 50s ribosomal protein l22, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHP3 Ribosomal protein L22 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_R_0 4Y4O_1W_1A 0.70 0.92 1.91 0.22 Ribosomal protein L22 compare
1YHQ_R_0 4Y4O_1W_1A 0.70 0.92 1.84 0.22 Ribosomal protein L22 compare
4Y4O_1W_1A 6S0Z_Q_A 0.74 0.97 1.9 0.65 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7K00_r_a 0.92 0.97 0.75 0.63 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7OF0_T_A 0.78 0.94 1.24 0.26 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7ASM_Q_A 0.93 0.96 1.22 0.68 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7O9M_T_A 0.74 0.92 1.04 0.27 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 7RYG_R_A 0.84 0.96 1.0 0.69 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
4Y4O_1W_1A 6AZ3_T_1,2 0.69 0.76 1.78 0.22 Ribosomal protein L22 compare
4Y4O_1W_1A 7O7Y_BP_B5,B8 0.70 0.9 1.56 0.24 Ribosomal protein L22 compare