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All interfaces > All interologs > Interface groups > group134 > 6AZ3_T_1,2

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Licorice
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RNA

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Licorice
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Chain
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Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_T
6AZ3_1,2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
T:2 [THR] 1:439 [U] 2.93 63.9
T:3 [HIS] 1:439 [U] 4.85 33.9
T:4 [TYR] 1:429 [G] 3.88 1:422 [U] 78.0
T:4 [TYR] 1:430 [A] 2.78 1:421 [U] 78.0
T:4 [TYR] 1:439 [U] 4.21 78.0
T:5 [SER] 1:453 [G] 3.31 7:10 [C] base:SC 79.1
T:5 [SER] 1:454 [U] 4.06 7:9 [G] 79.1
T:6 [ARG] 1:454 [U] 3.89 7:9 [G] 6.8
T:6 [ARG] 1:455 [G] 3.23 7:8 [C] 6.8
T:16 [LYS] 1:429 [G] 4.2 1:422 [U] 55.6
T:16 [LYS] 1:430 [A] 3.55 1:421 [U] 55.6
T:16 [LYS] 1:431 [G] 3.77 1:420 [C] 55.6
T:17 [ALA] 1:429 [G] 3.6 1:422 [U] 90.6
T:17 [ALA] 1:430 [A] 4.41 1:421 [U] 90.6
T:18 [LYS] 1:428 [A] 4.62 1:423 [U] 43.4
T:18 [LYS] 1:429 [G] 3.35 1:422 [U] sugar:BB 43.4
T:18 [LYS] 1:430 [A] 4.11 1:421 [U] 43.4
T:19 [VAL] 1:428 [A] 4.85 1:423 [U] 50.5
T:20 [SER] 1:428 [A] 3.91 1:423 [U] 58.5
T:20 [SER] 1:429 [G] 4.74 1:422 [U] 58.5
T:23 [ARG] 1:1611 [A] 3.27 50.9
T:23 [ARG] 1:1612 [C] 3.39 1:1620 [G] 50.9
T:23 [ARG] 2:2382 [C] 4.78 1:1542 [OMG] 50.9
T:24 [CYS] 2:2382 [C] 4.9 1:1542 [OMG] 78.1
T:25 [HIS] 1:1539 [G] 3.06 1:1540 [U] base/AA stacks 92.4
T:25 [HIS] 2:2382 [C] 3.47 1:1542 [OMG] 92.4
T:25 [HIS] 2:2383 [G] 2.54 1:1541 [A2M] 92.4
T:26 [TYR] 1:452 [C] 3.59 7:11 [G] 60.1
T:26 [TYR] 1:453 [G] 3.27 7:10 [C] 60.1
T:26 [TYR] 1:1539 [G] 4.41 1:1540 [U] 60.1
T:27 [LYS] 1:1538 [C] 3.15 2:2385 [A] 97.9
T:27 [LYS] 1:1539 [G] 3.27 1:1540 [U] 97.9
T:28 [ASN] 1:1539 [G] 3.57 1:1540 [U] 73.7
T:30 [PHE] 1:453 [G] 3.22 7:10 [C] 45.0
T:30 [PHE] 1:454 [U] 3.36 7:9 [G] 45.0
T:34 [ASN] 1:453 [G] 4.64 7:10 [C] 15.5
T:34 [ASN] 1:454 [U] 3.17 7:9 [G] 15.5
T:37 [ASN] 1:454 [U] 4.09 7:9 [G] 64.9
T:37 [ASN] 1:455 [G] 3.04 7:8 [C] 64.9
T:42 [ARG] 1:1563 [A] 3.49 0.0
T:43 [LYS] 1:1563 [A] 3.35 49.1
T:45 [GLN] 1:1563 [A] 3.91 47.6
T:46 [GLN] 1:1563 [A] 4.12 14.1
T:46 [GLN] 1:1571 [U] 3.41 base/AA stacks 14.1
T:49 [ARG] 1:1561 [A] 4.41 46.3
T:49 [ARG] 1:1562 [U] 3.09 46.3
T:49 [ARG] 1:1563 [A] 4.4 46.3
T:49 [ARG] 1:1571 [U] 2.73 base:SC, base:SC, sugar:SC 46.3
T:49 [ARG] 1:1572 [G] 3.48 46.3
T:50 [GLN] 1:1571 [U] 3.21 base/AA stacks 41.2
T:52 [LEU] 1:1572 [G] 3.39 55.5
T:52 [LEU] 1:1573 [C] 3.41 sugar:BB 55.5
T:53 [ALA] 1:1570 [A] 4.97 31.2
T:53 [ALA] 1:1571 [U] 3.95 31.2
T:53 [ALA] 1:1572 [G] 4.4 31.2
T:53 [ALA] 1:1573 [C] 4.6 31.2
T:54 [LYS] 2:2379 [U] 3.29 2:1846 [A] sugar:SC 31.4
T:55 [THR] 1:1570 [A] 3.57 68.6
T:55 [THR] 1:1571 [U] 3.13 68.6
T:62 [ARG] 1:453 [G] 2.83 7:10 [C] 82.6
T:62 [ARG] 1:454 [U] 2.96 7:9 [G] 82.6
T:62 [ARG] 1:1539 [G] 4.94 1:1540 [U] 82.6
T:63 [TYR] 1:452 [C] 3.66 7:11 [G] 50.7
T:63 [TYR] 1:453 [G] 3.7 7:10 [C] 50.7
T:63 [TYR] 1:1539 [G] 3.33 1:1540 [U] 50.7
T:64 [ASN] 1:1539 [G] 3.24 1:1540 [U] 59.8
T:64 [ASN] 1:1540 [U] 4.53 1:1539 [G] 59.8
T:65 [GLY] 1:1538 [C] 4.03 2:2385 [A] 52.9
T:65 [GLY] 1:1539 [G] 3.25 1:1540 [U] 52.9
T:65 [GLY] 1:1540 [U] 3.78 1:1539 [G] 52.9
T:65 [GLY] 2:2417 [A] 3.74 2:3211 [U] 52.9
T:66 [LYS] 1:1537 [G] 4.76 2:2386 [A2M] 76.3
T:66 [LYS] 1:1538 [C] 2.4 2:2385 [A] 76.3
T:66 [LYS] 1:1540 [U] 3.3 1:1539 [G] 76.3
T:66 [LYS] 2:2416 [U] 4.87 2:3212 [A] 76.3
T:66 [LYS] 2:2417 [A] 2.75 2:3211 [U] 76.3
T:66 [LYS] 2:2418 [A] 3.37 2:3210 [U] 76.3
T:66 [LYS] 2:3204 [C] 4.65 2:2384 [A] 76.3
T:66 [LYS] 2:3205 [C] 3.27 2:2424 [G] 76.3
T:67 [ILE] 1:1539 [G] 4.33 1:1540 [U] 67.1
T:67 [ILE] 1:1540 [U] 3.36 1:1539 [G] 67.1
T:67 [ILE] 2:2379 [U] 4.05 2:1846 [A] 67.1
T:67 [ILE] 2:2417 [A] 3.48 2:3211 [U] 67.1
T:68 [GLY] 2:2378 [C] 3.64 2:1847 [G] 74.0
T:68 [GLY] 2:2379 [U] 2.94 2:1846 [A] 74.0
T:69 [ARG] 2:2416 [U] 3.17 2:3212 [A] base:SC 93.2
T:69 [ARG] 2:2417 [A] 3.36 2:3211 [U] 93.2
T:69 [ARG] 2:3212 [A] 3.24 2:2416 [U] 93.2
T:69 [ARG] 2:3213 [G] 3.97 2:2415 [C] base/AA stacks 93.2
T:77 [GLY] 2:3214 [C] 4.31 2:2414 [G] 38.9
T:78 [GLN] 2:3214 [C] 4.56 2:2414 [G] 0.8
T:79 [THR] 2:3213 [G] 3.49 2:2415 [C] 39.1
T:79 [THR] 2:3214 [C] 3.53 2:2414 [G] sugar:SC 39.1
T:80 [LYS] 2:2416 [U] 2.84 2:3212 [A] 50.9
T:80 [LYS] 2:2417 [A] 2.85 2:3211 [U] 50.9
T:81 [GLY] 2:2379 [U] 4.76 2:1846 [A] 85.1
T:82 [ARG] 1:1539 [G] 3.28 1:1540 [U] sugar:SC 84.7
T:82 [ARG] 1:1540 [U] 3.24 1:1539 [G] 84.7
T:82 [ARG] 2:2379 [U] 3.21 2:1846 [A] 84.7
T:82 [ARG] 2:2380 [A] 3.36 2:1845 [U] 84.7
T:83 [TRP] 2:2379 [U] 3.62 2:1846 [A] 70.0
T:83 [TRP] 2:2380 [A] 3.02 2:1845 [U] 70.0
T:84 [PRO] 2:2380 [A] 3.49 2:1845 [U] 97.9
T:84 [PRO] 2:2381 [G] 3.47 1:1543 [C] 97.9
T:85 [ARG] 1:1573 [C] 3.16 base:SC 46.1
T:85 [ARG] 1:1574 [A] 3.1 base/AA stacks 46.1
T:85 [ARG] 2:2380 [A] 3.29 2:1845 [U] 46.1
T:85 [ARG] 2:2381 [G] 3.4 1:1543 [C] 46.1
T:86 [LYS] 2:2380 [A] 4.34 2:1845 [U] 95.9
T:86 [LYS] 2:2381 [G] 3.04 1:1543 [C] 95.9
T:86 [LYS] 2:2382 [C] 2.38 1:1542 [OMG] 95.9
T:87 [SER] 2:2381 [G] 4.23 1:1543 [C] 83.7
T:89 [VAL] 1:1572 [G] 3.71 37.8
T:89 [VAL] 1:1573 [C] 3.81 37.8
T:92 [MET] 1:1572 [G] 3.51 65.0
T:96 [LYS] 1:423 [U] 4.0 1:428 [A] 55.8
T:96 [LYS] 1:1561 [A] 4.05 55.8
T:96 [LYS] 1:1572 [G] 2.36 base:SC 55.8
T:97 [ASN] 1:423 [U] 3.62 1:428 [A] 89.6
T:97 [ASN] 1:428 [A] 4.66 1:423 [U] 89.6
T:97 [ASN] 1:429 [G] 3.14 1:422 [U] 89.6
T:100 [ALA] 1:423 [U] 3.3 1:428 [A] 73.8
T:101 [ASN] 1:429 [G] 2.74 1:422 [U] base:SC, sugar:SC 92.9
T:101 [ASN] 1:430 [A] 3.23 1:421 [U] 92.9
T:104 [GLU] 1:422 [U] 3.6 1:429 [G] 10.6
T:104 [GLU] 1:423 [U] 3.89 1:428 [A] 10.6
T:105 [LYS] 1:430 [A] 4.89 1:421 [U] 86.5
T:110 [ASN] 1:1563 [A] 2.99 45.4
T:116 [HIS] 1:454 [U] 3.81 7:9 [G] sugar:SC 87.4
T:117 [VAL] 1:454 [U] 3.65 7:9 [G] 68.6
T:118 [GLN] 1:453 [G] 3.26 7:10 [C] 63.4
T:118 [GLN] 1:454 [U] 3.77 7:9 [G] 63.4
T:119 [VAL] 1:453 [G] 2.37 7:10 [C] sugar:BB 83.0
T:120 [ASP] 1:453 [G] 4.11 7:10 [C] 76.9
T:121 [GLN] 1:452 [C] 3.71 7:11 [G] 64.2
T:121 [GLN] 1:1535 [U] 3.8 2:2388 [G] 64.2
T:124 [ARG] 1:1534 [U] 4.29 1:685 [A] 39.3
T:124 [ARG] 1:1535 [U] 2.67 2:2388 [G] 39.3
T:125 [MET] 1:1611 [A] 3.68 40.4
T:125 [MET] 1:1612 [C] 4.63 1:1620 [G] 40.4
T:126 [ARG] 1:1612 [C] 4.96 1:1620 [G] 49.7
T:127 [ARG] 1:1612 [C] 3.49 1:1620 [G] 84.3
T:127 [ARG] 1:1613 [G] 3.16 1:1619 [C] 84.3
T:127 [ARG] 1:1614 [G] 3.88 84.3
T:127 [ARG] 1:1615 [C] 2.64 84.3
T:127 [ARG] 2:2382 [C] 3.27 1:1542 [OMG] 84.3
T:127 [ARG] 2:2383 [G] 3.1 1:1541 [A2M] 84.3
T:128 [ARG] 1:1614 [G] 4.4 66.2
T:129 [THR] 1:1614 [G] 2.8 base:SC 64.4
T:129 [THR] 2:2384 [A] 3.6 2:3204 [C] 64.4
T:130 [TYR] 1:931 [G] 4.47 57.1
T:130 [TYR] 1:933 [A] 3.99 1:928 [C] 57.1
T:130 [TYR] 1:1614 [G] 3.69 base:BB 57.1
T:130 [TYR] 2:1811 [C] 3.81 57.1
T:130 [TYR] 2:1812 [A] 2.82 base/AA stacks 57.1
T:131 [ARG] 1:930 [U] 3.45 84.4
T:131 [ARG] 1:931 [G] 3.52 84.4
T:131 [ARG] 1:933 [A] 3.77 1:928 [C] 84.4
T:131 [ARG] 1:934 [A] 4.28 84.4
T:131 [ARG] 1:1541 [A2M] 4.57 2:2383 [G] 84.4
T:131 [ARG] 2:1812 [A] 4.81 84.4
T:131 [ARG] 2:2384 [A] 3.24 2:3204 [C] base:SC 84.4
T:131 [ARG] 2:2385 [A] 3.64 1:1538 [C] 84.4
T:132 [ALA] 1:930 [U] 3.36 95.2
T:132 [ALA] 1:931 [G] 3.45 95.2
T:132 [ALA] 1:933 [A] 4.46 1:928 [C] 95.2
T:132 [ALA] 1:934 [A] 4.06 95.2
T:133 [HIS] 1:929 [G] 4.15 74.3
T:133 [HIS] 1:930 [U] 4.51 74.3
T:133 [HIS] 1:931 [G] 3.15 base:BB base/AA stacks 74.3
T:133 [HIS] 1:934 [A] 3.29 74.3
T:134 [GLY] 1:934 [A] 3.31 88.3
T:134 [GLY] 2:1811 [C] 3.09 base:BB 88.3
T:135 [ARG] 1:930 [U] 3.04 sugar:SC 92.3
T:135 [ARG] 2:1811 [C] 4.75 92.3
T:135 [ARG] 2:2385 [A] 3.35 1:1538 [C] sugar:SC 92.3
T:135 [ARG] 2:2386 [A2M] 3.88 1:1537 [G] 92.3
T:136 [ILE] 2:1811 [C] 3.49 77.6
T:137 [THR] 2:2384 [A] 3.19 2:3204 [C] 66.9
T:137 [THR] 2:2385 [A] 3.21 1:1538 [C] 66.9
T:138 [PRO] 2:2383 [G] 4.76 1:1541 [A2M] 43.5
T:138 [PRO] 2:2384 [A] 3.01 2:3204 [C] sugar:BB 43.5
T:138 [PRO] 2:2385 [A] 3.26 1:1538 [C] 43.5
T:139 [TYR] 1:1542 [OMG] 4.36 2:2382 [C] 40.0
T:139 [TYR] 1:1614 [G] 3.52 40.0
T:139 [TYR] 1:1615 [C] 4.17 40.0
T:139 [TYR] 2:2382 [C] 3.26 1:1542 [OMG] sugar:SC 40.0
T:139 [TYR] 2:2383 [G] 3.49 1:1541 [A2M] 40.0
T:139 [TYR] 2:2384 [A] 4.37 2:3204 [C] 40.0
T:140 [MET] 2:2383 [G] 3.1 1:1541 [A2M] 34.1
T:140 [MET] 2:2384 [A] 2.89 2:3204 [C] 34.1
T:141 [CYS] 1:1539 [G] 3.95 1:1540 [U] 61.5
T:141 [CYS] 2:2383 [G] 3.29 1:1541 [A2M] 61.5
T:141 [CYS] 2:2384 [A] 4.36 2:3204 [C] 61.5
T:142 [SER] 1:1539 [G] 3.93 1:1540 [U] 58.8

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group134 6AZ3_T_1,2 T: 60s ribosomal protein l17, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3S7WY02 Ribosomal protein L22 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_T_1,2 7OF0_T_A 0.70 0.79 2.7 0.08 Ribosomal protein L22 compare
6AZ3_T_1,2 7O9M_T_A 0.66 0.78 2.7 0.09 Ribosomal protein L22 compare
6AZ3_T_1,2 6S0Z_Q_A 0.51 0.76 2.4 0.14 Ribosomal protein L22 compare
6AZ3_T_1,2 7K00_r_a 0.67 0.76 1.93 0.26 Ribosomal protein L22 compare
4Y4O_1W_1A 6AZ3_T_1,2 0.69 0.76 1.78 0.22 Ribosomal protein L22 compare
6AZ3_T_1,2 7RYG_R_A 0.67 0.76 1.76 0.24 Ribosomal protein L22 compare
6AZ3_T_1,2 7ASM_Q_A 0.68 0.76 1.68 0.19 Ribosomal protein L22 compare
1VQ8_R_0 6AZ3_T_1,2 0.76 0.8 1.5 0.28 Ribosomal protein L22 compare
1YHQ_R_0 6AZ3_T_1,2 0.75 0.8 1.43 0.27 Ribosomal protein L22 compare
6AZ3_T_1,2 7O7Y_BP_B5,B8 0.90 0.93 0.97 0.55 Ribosomal protein L22 Eukaryotic large subunit ribosomal RNA compare