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All interfaces > All interologs > Interface groups > group134 > 6AZ3_T_5

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_T
6AZ3_5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
T:43 [LYS] 5:128 [G] 4.89 5:6 [C] 49.19
T:43 [LYS] 5:129 [A] 3.24 5:5 [U] 49.19
T:43 [LYS] 5:130 [C] 4.86 5:4 [G] 49.19
T:46 [GLN] 5:128 [G] 3.03 5:6 [C] 14.11
T:46 [GLN] 5:129 [A] 4.13 5:5 [U] 14.11
T:50 [GLN] 5:128 [G] 2.74 5:6 [C] sugar:SC 41.28
T:54 [LYS] 5:8 [C] 4.57 5:126 [G] 31.47
T:55 [THR] 5:7 [C] 2.97 5:127 [G] sugar:BB 68.61
T:55 [THR] 5:8 [C] 3.49 5:126 [G] 68.61
T:55 [THR] 5:127 [G] 4.52 5:7 [C] 68.61
T:56 [ARG] 5:7 [C] 4.97 5:127 [G] 39.7
T:56 [ARG] 5:128 [G] 4.12 5:6 [C] 39.7
T:56 [ARG] 5:129 [A] 3.84 5:5 [U] 39.7
T:68 [GLY] 5:17 [C] 4.49 74.01
T:69 [ARG] 5:16 [A] 4.74 93.25
T:69 [ARG] 5:17 [C] 2.69 base:SC, sugar:BB 93.25
T:69 [ARG] 5:18 [G] 3.51 93.25
T:70 [THR] 5:17 [C] 4.83 65.84
T:70 [THR] 5:18 [G] 3.77 65.84
T:71 [ALA] 5:6 [C] 4.97 5:128 [G] 52.71
T:71 [ALA] 5:7 [C] 3.27 5:127 [G] 52.71
T:71 [ALA] 5:8 [C] 4.62 5:126 [G] 52.71
T:71 [ALA] 5:18 [G] 3.48 52.71
T:71 [ALA] 5:19 [A] 3.27 5:14 [A] 52.71
T:72 [GLN] 5:7 [C] 3.27 5:127 [G] 71.54
T:72 [GLN] 5:8 [C] 3.26 5:126 [G] 71.54
T:74 [LYS] 5:6 [C] 2.96 5:128 [G] 63.63
T:74 [LYS] 5:7 [C] 3.11 5:127 [G] 63.63
T:74 [LYS] 5:19 [A] 2.76 5:14 [A] 63.63
T:75 [GLU] 5:129 [A] 3.4 5:5 [U] 42.0
T:79 [THR] 5:18 [G] 3.84 39.19

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group134 6AZ3_T_5 T: 60s ribosomal protein l17, putative, Leishmania donovani (natural) 5: rRNA epsilon, Leishmania donovani (natural) A0A3S7WY02 Ribosomal protein L22 ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_R_0 6AZ3_T_5 0.69 0.88 1.88 0.07 Ribosomal protein L22 compare
1YHQ_R_0 6AZ3_T_5 0.66 0.88 2.04 0.07 Ribosomal protein L22 compare
6AZ3_T_5 7O7Y_BP_B5,B8 0.83 0.96 0.66 0.57 Ribosomal protein L22 compare