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All interfaces > All interologs > Interface groups > group134 > 7RYG_R_A

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

7RYG_R
7RYG_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
R:4 [THR] A:493 [G] 4.71 A:485 [C] 0.0
R:4 [THR] A:494 [G] 3.94 A:484 [C] 0.0
R:5 [ALA] A:493 [G] 3.87 A:485 [C] 0.0
R:6 [LYS] A:492 [G] 3.13 A:486 [C] sugar:BB 0.0
R:6 [LYS] A:493 [G] 3.4 A:485 [C] sugar:BB 0.0
R:6 [LYS] A:494 [G] 4.11 A:484 [C] 0.0
R:7 [LEU] A:491 [A] 4.13 A:487 [U] 0.0
R:7 [LEU] A:492 [G] 3.48 A:486 [C] 0.0
R:8 [ARG] A:31 [G] 3.84 A:515 [C] 0.0
R:8 [ARG] A:32 [U] 3.15 A:514 [A] 0.0
R:8 [ARG] A:492 [G] 3.01 A:486 [C] sugar:BB 0.0
R:8 [ARG] A:493 [G] 3.17 A:485 [C] 0.0
R:11 [ALA] A:1317 [A] 4.91 0.0
R:11 [ALA] A:2007 [U] 4.25 A:1264 [A] 0.0
R:12 [ILE] A:2007 [U] 3.92 A:1264 [A] 0.0
R:13 [SER] A:1261 [G] 3.24 0.0
R:15 [GLN] A:1261 [G] 3.42 base/AA stacks 0.0
R:16 [LYS] A:1261 [G] 3.64 0.0
R:16 [LYS] A:2007 [U] 2.77 A:1264 [A] 0.0
R:16 [LYS] A:2008 [G] 3.31 A:1263 [A] base:SC 0.0
R:18 [ARG] A:516 [C] 3.15 A:30 [G] sugar:SC 0.0
R:18 [ARG] A:517 [G] 3.36 A:29 [U] 0.0
R:22 [ASP] A:518 [C] 4.72 A:28 [G] 0.0
R:25 [ARG] A:518 [C] 3.46 A:28 [G] 0.0
R:25 [ARG] A:519 [A] 3.68 A:27 [U] 0.0
R:40 [ASN] A:2004 [C] 4.7 A:1647 [G] 0.0
R:40 [ASN] A:2005 [A] 4.1 A:1646 [U] 0.0
R:40 [ASN] A:2006 [G] 4.87 A:1265 [C] 0.0
R:41 [LYS] A:2005 [A] 3.14 A:1646 [U] 0.0
R:41 [LYS] A:2006 [G] 3.78 A:1265 [C] 0.0
R:42 [LYS] A:2005 [A] 4.73 A:1646 [U] 0.0
R:42 [LYS] A:2006 [G] 3.28 A:1265 [C] 0.0
R:42 [LYS] A:2007 [U] 2.81 A:1264 [A] 0.0
R:43 [ALA] A:2006 [G] 4.98 A:1265 [C] 0.0
R:49 [LYS] A:486 [C] 4.9 A:492 [G] 0.0
R:49 [LYS] A:487 [U] 3.07 A:491 [A] sugar:SC 0.0
R:49 [LYS] A:488 [G] 4.56 0.0
R:49 [LYS] A:490 [G] 3.25 0.0
R:49 [LYS] A:491 [A] 3.83 A:487 [U] 0.0
R:52 [GLU] A:486 [C] 3.88 A:492 [G] 0.0
R:53 [SER] A:486 [C] 3.05 A:492 [G] base:SC 0.0
R:53 [SER] A:492 [G] 3.23 A:486 [C] base:SC 0.0
R:53 [SER] A:493 [G] 4.44 A:485 [C] 0.0
R:56 [ALA] A:485 [C] 4.06 A:493 [G] 0.0
R:56 [ALA] A:486 [C] 3.28 A:492 [G] 0.0
R:57 [ASN] A:485 [C] 4.21 A:493 [G] 0.0
R:57 [ASN] A:493 [G] 3.08 A:485 [C] base:SC 0.0
R:57 [ASN] A:494 [G] 3.16 A:484 [C] 0.0
R:60 [HIS] A:484 [C] 3.05 A:494 [G] sugar:SC 0.0
R:60 [HIS] A:485 [C] 3.3 A:493 [G] 0.0
R:60 [HIS] A:494 [G] 4.26 A:484 [C] 0.0
R:61 [ASN] A:494 [G] 2.56 A:484 [C] base:SC, base:SC, sugar:SC 0.0
R:61 [ASN] A:495 [G] 3.37 A:483 [C] 0.0
R:73 [THR] A:518 [C] 4.06 A:28 [G] 0.0
R:74 [ILE] A:518 [C] 4.29 A:28 [G] 0.0
R:75 [TYR] A:30 [G] 4.44 A:516 [C] 0.0
R:75 [TYR] A:517 [G] 3.83 A:29 [U] 0.0
R:75 [TYR] A:518 [C] 3.88 A:28 [G] 0.0
R:76 [VAL] A:517 [G] 3.23 A:29 [U] sugar:BB 0.0
R:77 [ASP] A:30 [G] 3.36 A:516 [C] base:SC 0.0
R:77 [ASP] A:31 [G] 3.68 A:515 [C] 0.0
R:77 [ASP] A:517 [G] 4.09 A:29 [U] 0.0
R:78 [GLU] A:31 [G] 2.27 A:515 [C] base:SC, sugar:BB 0.0
R:78 [GLU] A:32 [U] 3.74 A:514 [A] 0.0
R:78 [GLU] A:515 [C] 4.87 A:31 [G] 0.0
R:78 [GLU] A:516 [C] 3.57 A:30 [G] 0.0
R:78 [GLU] A:1257 [G] 4.34 A:2013 [C] 0.0
R:79 [GLY] A:31 [G] 4.51 A:515 [C] 0.0
R:79 [GLY] A:32 [U] 4.13 A:514 [A] 0.0
R:80 [MET] A:32 [U] 4.15 A:514 [A] 0.0
R:80 [MET] A:33 [G] 3.73 A:513 [A] 0.0
R:81 [SER] A:33 [G] 4.81 A:513 [A] 0.0
R:82 [LEU] A:1317 [A] 4.84 0.0
R:83 [LYS] A:1255 [A] 4.62 A:578 [U] 0.0
R:83 [LYS] A:1256 [C] 2.53 A:577 [G] 0.0
R:84 [ARG] A:1317 [A] 2.92 0.0
R:84 [ARG] A:1318 [C] 3.13 A:1326 [G] 0.0
R:86 [MET] A:1320 [U] 4.7 0.0
R:86 [MET] A:2009 [A] 4.15 A:1262 [U] 0.0
R:87 [PRO] A:1612 [A] 3.69 0.0
R:87 [PRO] A:1613 [C] 3.81 0.0
R:88 [ARG] A:745 [U] 3.7 A:2010 [A] 0.0
R:88 [ARG] A:746 [G] 3.18 0.0
R:88 [ARG] A:748 [A] 4.51 A:743 [G] 0.0
R:88 [ARG] A:749 [A] 4.85 0.0
R:88 [ARG] A:1263 [A] 4.72 A:2008 [G] 0.0
R:88 [ARG] A:1612 [A] 3.28 base:BB 0.0
R:88 [ARG] A:1613 [C] 4.68 0.0
R:88 [ARG] A:2009 [A] 3.5 A:1262 [U] base:SC 0.0
R:88 [ARG] A:2609 [U] 4.49 0.0
R:89 [ALA] A:745 [U] 3.44 A:2010 [A] 0.0
R:89 [ALA] A:746 [G] 3.55 0.0
R:89 [ALA] A:748 [A] 4.34 A:743 [G] 0.0
R:89 [ALA] A:749 [A] 3.86 0.0
R:90 [LYS] A:744 [U] 3.94 0.0
R:90 [LYS] A:745 [U] 3.95 A:2010 [A] 0.0
R:90 [LYS] A:746 [G] 3.83 0.0
R:90 [LYS] A:749 [A] 2.85 0.0
R:91 [GLY] A:749 [A] 3.91 0.0
R:91 [GLY] A:1612 [A] 3.42 0.0
R:92 [ARG] A:745 [U] 3.27 A:2010 [A] sugar:SC 0.0
R:92 [ARG] A:1612 [A] 3.15 base:BB 0.0
R:93 [ALA] A:1612 [A] 3.62 0.0
R:94 [ASP] A:2009 [A] 3.06 A:1262 [U] 0.0
R:94 [ASP] A:2010 [A] 3.26 A:745 [U] 0.0
R:94 [ASP] A:2011 [A] 4.86 A:1259 [G] 0.0
R:95 [ARG] A:2009 [A] 4.09 A:1262 [U] 0.0
R:95 [ARG] A:2010 [A] 4.46 A:745 [U] 0.0
R:96 [ILE] A:2008 [G] 3.62 A:1263 [A] 0.0
R:96 [ILE] A:2009 [A] 3.82 A:1262 [U] 0.0
R:97 [THR] A:2008 [G] 3.92 A:1263 [A] 0.0
R:97 [THR] A:2009 [A] 3.11 A:1262 [U] 0.0
R:98 [LYS] A:1318 [C] 3.53 A:1326 [G] 0.0
R:98 [LYS] A:2007 [U] 3.27 A:1264 [A] 0.0
R:98 [LYS] A:2008 [G] 2.71 A:1263 [A] 0.0
R:99 [ARG] A:1257 [G] 3.64 A:2013 [C] 0.0
R:99 [ARG] A:1261 [G] 4.04 0.0
R:99 [ARG] A:2008 [G] 4.49 A:1263 [A] 0.0
R:102 [HIS] A:31 [G] 4.02 A:515 [C] 0.0
R:102 [HIS] A:32 [U] 4.06 A:514 [A] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group134 7RYG_R_A R: 50s ribosomal protein l22, Acinetobacter baumannii ab0057 (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) A0A009I821 Ribosomal protein L22 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_Q_A 7RYG_R_A 0.74 0.98 1.7 0.55 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
1VQ8_R_0 7RYG_R_A 0.74 0.92 1.5 0.29 Ribosomal protein L22 compare
7OF0_T_A 7RYG_R_A 0.80 0.9 1.73 0.24 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
1YHQ_R_0 7RYG_R_A 0.74 0.92 1.41 0.29 Ribosomal protein L22 compare
4Y4O_1W_1A 7RYG_R_A 0.84 0.96 1.0 0.69 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare
6AZ3_T_1,2 7RYG_R_A 0.67 0.76 1.76 0.24 Ribosomal protein L22 compare
7ASM_Q_A 7RYG_R_A 0.92 0.98 0.88 0.61 Ribosomal protein L22 Bacterial large subunit ribosomal RNA compare